RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 TERTO14746 1132 aaKnown RBP9.59□□□□□ -0.87
SCFD1-211ENST00000554437 PPP1R12BO60237 982 aaPredicted RBP9.59□□□□□ -0.87
SCFD1-211ENST00000554437 PLA2G4AP47712 749 aa9.59□□□□□ -0.87
SCFD1-211ENST00000554437 GAS2L2Q8NHY3 880 aa9.59□□□□□ -0.87
SCFD1-211ENST00000554437 CLP1Q92989 425 aaKnown RBP9.59□□□□□ -0.87
SCFD1-211ENST00000554437 TIMMDC1Q9NPL8 285 aa9.59□□□□□ -0.87
SCFD1-211ENST00000554437 CHMP3Q9Y3E7 222 aa9.59□□□□□ -0.87
SCFD1-211ENST00000554437 C21orf2O43822 256 aa9.58□□□□□ -0.88
SCFD1-211ENST00000554437 PSMA6P60900 246 aaKnown RBP9.58□□□□□ -0.88
SCFD1-211ENST00000554437 PTSQ03393 145 aa9.58□□□□□ -0.88
SCFD1-211ENST00000554437 PDE4CQ08493 712 aa9.58□□□□□ -0.88
SCFD1-211ENST00000554437 WDR44Q5JSH3 913 aa9.58□□□□□ -0.88
SCFD1-211ENST00000554437 ZNF232Q9UNY5 417 aa9.58□□□□□ -0.88
SCFD1-211ENST00000554437 PARP3Q9Y6F1 533 aa9.58□□□□□ -0.88
SCFD1-211ENST00000554437 IGFBP4P22692 258 aa9.57□□□□□ -0.88
SCFD1-211ENST00000554437 WEE1P30291 646 aa9.57□□□□□ -0.88
SCFD1-211ENST00000554437 TEAD4Q15561 434 aa9.57□□□□□ -0.88
SCFD1-211ENST00000554437 ZNF295-AS1Q8N0V1 137 aa9.57□□□□□ -0.88
SCFD1-211ENST00000554437 L3MBTL2Q969R5 705 aa9.57□□□□□ -0.88
SCFD1-211ENST00000554437 AIDAQ96BJ3 306 aa9.57□□□□□ -0.88
SCFD1-211ENST00000554437 SERTM1A2A2V5 107 aa9.56□□□□□ -0.88
SCFD1-211ENST00000554437 NOS2P35228 1153 aa9.56□□□□□ -0.88
SCFD1-211ENST00000554437 ZDHHC1Q8WTX9 485 aa9.56□□□□□ -0.88
SCFD1-211ENST00000554437 ATP2B4P23634 1241 aa9.55□□□□□ -0.88
SCFD1-211ENST00000554437 SLAIN2Q9P270 581 aa9.55□□□□□ -0.88
SCFD1-211ENST00000554437 SENP3-EIF4A1A0A087X0R7 540 aa9.54□□□□□ -0.88
SCFD1-211ENST00000554437 SUZ12Q15022 739 aaKnown RBP9.54□□□□□ -0.88
SCFD1-211ENST00000554437 OCLNQ16625 522 aa9.54□□□□□ -0.88
SCFD1-211ENST00000554437 SH3PXD2AQ5TCZ1 1133 aa9.54□□□□□ -0.88
SCFD1-211ENST00000554437 VTI1AQ96AJ9 217 aa9.54□□□□□ -0.88
SCFD1-211ENST00000554437 GAS2L1Q99501 681 aaPredicted RBP9.54□□□□□ -0.88
SCFD1-211ENST00000554437 DYRK1BQ9Y463 629 aa9.54□□□□□ -0.88
SCFD1-211ENST00000554437 A0A1B0GTH6 734 aa9.53□□□□□ -0.88
SCFD1-211ENST00000554437 SLC35F4A4IF30 521 aa9.53□□□□□ -0.88
SCFD1-211ENST00000554437 EML1O00423 815 aa9.53□□□□□ -0.88
SCFD1-211ENST00000554437 FOXO3O43524 673 aa9.53□□□□□ -0.88
SCFD1-211ENST00000554437 NBPF1Q3BBV0 1214 aa9.53□□□□□ -0.88
SCFD1-211ENST00000554437 STAG2Q8N3U4 1231 aa9.53□□□□□ -0.88
SCFD1-211ENST00000554437 CCDC155Q8N6L0 562 aa9.53□□□□□ -0.88
SCFD1-211ENST00000554437 C2orf49Q9BVC5 232 aaPredicted RBP9.53□□□□□ -0.88
SCFD1-211ENST00000554437 CXXC1Q9P0U4 656 aaPredicted RBP9.53□□□□□ -0.88
SCFD1-211ENST00000554437 HCN4Q9Y3Q4 1203 aa9.53□□□□□ -0.88
SCFD1-211ENST00000554437 FKBP5Q13451 457 aaPredicted RBP9.52□□□□□ -0.89
SCFD1-211ENST00000554437 F11P03951 625 aa9.51□□□□□ -0.89
SCFD1-211ENST00000554437 TATP17735 454 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-211ENST00000554437 LORP23490 312 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-211ENST00000554437 MSX1P28360 303 aa9.51□□□□□ -0.89
SCFD1-211ENST00000554437 TXLNAP40222 546 aa9.51□□□□□ -0.89
SCFD1-211ENST00000554437 RIPOR1Q6ZS17 1223 aa9.51□□□□□ -0.89
SCFD1-211ENST00000554437 NGLY1Q96IV0 654 aa9.51□□□□□ -0.89
SCFD1-211ENST00000554437 GPAMQ9HCL2 828 aa9.51□□□□□ -0.89
SCFD1-211ENST00000554437 FAM181BA6NEQ2 426 aa9.5□□□□□ -0.89
SCFD1-211ENST00000554437 SSFA2P28290 1259 aa9.5□□□□□ -0.89
SCFD1-211ENST00000554437 MKNK1Q9BUB5 465 aa9.5□□□□□ -0.89
SCFD1-211ENST00000554437 ZDHHC3Q9NYG2 299 aa9.5□□□□□ -0.89
SCFD1-211ENST00000554437 PPFIA3O75145 1194 aa9.49□□□□□ -0.89
SCFD1-211ENST00000554437 HIRAP54198 1017 aaPredicted RBP9.49□□□□□ -0.89
SCFD1-211ENST00000554437 ARSJQ5FYB0 599 aaPredicted RBP9.49□□□□□ -0.89
SCFD1-211ENST00000554437 B4GALNT3Q6L9W6 998 aa9.49□□□□□ -0.89
SCFD1-211ENST00000554437 POTEAQ6S8J7 498 aa9.49□□□□□ -0.89
SCFD1-211ENST00000554437 C1orf216Q8TAB5 229 aa9.49□□□□□ -0.89
SCFD1-211ENST00000554437 PHACTR1Q9C0D0 580 aa9.49□□□□□ -0.89
SCFD1-211ENST00000554437 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.49□□□□□ -0.893e-6■■■■■ 28.8
SCFD1-211ENST00000554437 NXF1Q9UBU9 619 aaKnown RBP9.49□□□□□ -0.89
SCFD1-211ENST00000554437 ATP4AP20648 1035 aa9.48□□□□□ -0.89
SCFD1-211ENST00000554437 BICDL1Q6ZP65 573 aa9.48□□□□□ -0.89
SCFD1-211ENST00000554437 ALDH16A1Q8IZ83 802 aa9.48□□□□□ -0.89
SCFD1-211ENST00000554437 PGBD3Q8N328 593 aa9.48□□□□□ -0.89
SCFD1-211ENST00000554437 RUBCNLQ9H714 662 aa9.48□□□□□ -0.89
SCFD1-211ENST00000554437 PDIA4P13667 645 aaKnown RBP9.47□□□□□ -0.89
SCFD1-211ENST00000554437 ITGA6P23229 1130 aa9.47□□□□□ -0.89
SCFD1-211ENST00000554437 VEGFBP49765 207 aa9.47□□□□□ -0.89
SCFD1-211ENST00000554437 C1orf53Q5VUE5 145 aa9.47□□□□□ -0.89
SCFD1-211ENST00000554437 CAPN12Q6ZSI9 719 aa9.46□□□□□ -0.9
SCFD1-211ENST00000554437 HOMEZQ8IX15 550 aa9.46□□□□□ -0.9
SCFD1-211ENST00000554437 RHPN1Q8TCX5 695 aa9.46□□□□□ -0.9
SCFD1-211ENST00000554437 H7C1W4 665 aa9.45□□□□□ -0.9
SCFD1-211ENST00000554437 PTCD1O75127 700 aaKnown RBP9.45□□□□□ -0.9
SCFD1-211ENST00000554437 SCNN1AP37088 669 aa9.45□□□□□ -0.9
SCFD1-211ENST00000554437 PHLDB3Q6NSJ2 640 aa9.45□□□□□ -0.9
SCFD1-211ENST00000554437 COL26A1Q96A83 441 aa9.45□□□□□ -0.9
SCFD1-211ENST00000554437 TRAIPQ9BWF2 469 aa9.45□□□□□ -0.9
SCFD1-211ENST00000554437 NEUROD4Q9HD90 331 aa9.45□□□□□ -0.9
SCFD1-211ENST00000554437 CUEDC1Q9NWM3 386 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-211ENST00000554437 A0A1W2PNR3 127 aa9.44□□□□□ -0.9
SCFD1-211ENST00000554437 CDC14CA4D256 554 aa9.44□□□□□ -0.9
SCFD1-211ENST00000554437 NAA30Q147X3 362 aaPredicted RBP9.44□□□□□ -0.9
SCFD1-211ENST00000554437 EFHC2Q5JST6 749 aa9.44□□□□□ -0.9
SCFD1-211ENST00000554437 TRIM22Q8IYM9 498 aa9.44□□□□□ -0.9
SCFD1-211ENST00000554437 ZSCAN1Q8NBB4 408 aa9.44□□□□□ -0.9
SCFD1-211ENST00000554437 ZIC5Q96T25 663 aa9.44□□□□□ -0.9
SCFD1-211ENST00000554437 NUCKS1Q9H1E3 243 aaKnown RBP9.44□□□□□ -0.9
SCFD1-211ENST00000554437 CRISPLD1Q9H336 500 aa9.44□□□□□ -0.9
SCFD1-211ENST00000554437 GJA3Q9Y6H8 435 aa9.44□□□□□ -0.9
SCFD1-211ENST00000554437 GMPRP36959 345 aa9.43□□□□□ -0.9
SCFD1-211ENST00000554437 DBN1Q16643 649 aa9.43□□□□□ -0.9
SCFD1-211ENST00000554437 RTN1Q16799 776 aa9.43□□□□□ -0.9
SCFD1-211ENST00000554437 NPAS3Q8IXF0 933 aa9.43□□□□□ -0.9
SCFD1-211ENST00000554437 QTRT2Q9H974 415 aaKnown RBP9.43□□□□□ -0.9
SCFD1-211ENST00000554437 SEPT3Q9UH03 358 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms