RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CICQ96RK0 1608 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-208ENST00000554165 GYS1P13807 737 aa15.31■□□□□ 0.04
CCDC88C-208ENST00000554165 CANXP27824 592 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-208ENST00000554165 RFC4P35249 363 aa15.31■□□□□ 0.04
CCDC88C-208ENST00000554165 FMNL2Q96PY5 1086 aa15.31■□□□□ 0.04
CCDC88C-208ENST00000554165 USP16Q9Y5T5 823 aa15.31■□□□□ 0.04
CCDC88C-208ENST00000554165 SOS1Q07889 1333 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-208ENST00000554165 SENP3-EIF4A1A0A087X0R7 540 aa15.3■□□□□ 0.04
CCDC88C-208ENST00000554165 A1BGP04217 495 aa15.3■□□□□ 0.04
CCDC88C-208ENST00000554165 MMP10P09238 476 aa15.3■□□□□ 0.04
CCDC88C-208ENST00000554165 ADRA2BP18089 450 aa15.3■□□□□ 0.04
CCDC88C-208ENST00000554165 PIP4K2AP48426 406 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-208ENST00000554165 RUNDC1Q96C34 613 aa15.3■□□□□ 0.04
CCDC88C-208ENST00000554165 C4AP0C0L4 1744 aa15.29■□□□□ 0.04
CCDC88C-208ENST00000554165 USP42Q9H9J4 1324 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-208ENST00000554165 STARD3NLO95772 234 aa15.28■□□□□ 0.04
CCDC88C-208ENST00000554165 FKBP8Q14318 412 aa15.28■□□□□ 0.04
CCDC88C-208ENST00000554165 ANP32CO43423 234 aa15.27■□□□□ 0.04
CCDC88C-208ENST00000554165 USPL1Q5W0Q7 1092 aa15.27■□□□□ 0.04
CCDC88C-208ENST00000554165 TRIM35Q9UPQ4 493 aa15.27■□□□□ 0.04
CCDC88C-208ENST00000554165 ZNF330Q9Y3S2 320 aaPredicted RBP15.27■□□□□ 0.04
CCDC88C-208ENST00000554165 COL15A1P39059 1388 aa15.26■□□□□ 0.03
CCDC88C-208ENST00000554165 EIF5P55010 431 aaKnown RBP15.26■□□□□ 0.03
CCDC88C-208ENST00000554165 NLGN1Q8N2Q7 840 aa15.26■□□□□ 0.03
CCDC88C-208ENST00000554165 BCL2L12Q9HB09 334 aa15.26■□□□□ 0.03
CCDC88C-208ENST00000554165 APAF1O14727 1248 aa15.25■□□□□ 0.03
CCDC88C-208ENST00000554165 SNRPA1P09661 255 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-208ENST00000554165 EIF4A1P60842 406 aaKnown RBP15.25■□□□□ 0.03
CCDC88C-208ENST00000554165 DDR1Q08345 913 aa15.25■□□□□ 0.03
CCDC88C-208ENST00000554165 TEX13AQ9BXU3 409 aaPredicted RBP15.25■□□□□ 0.03
CCDC88C-208ENST00000554165 WWC3Q9ULE0 1092 aa15.25■□□□□ 0.03
CCDC88C-208ENST00000554165 NBPF26B4DH59 902 aa15.24■□□□□ 0.03
CCDC88C-208ENST00000554165 ZPR1O75312 459 aa15.24■□□□□ 0.03
CCDC88C-208ENST00000554165 NBPF10Q6P3W6 841 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-208ENST00000554165 PELP1Q8IZL8 1130 aaKnown RBP15.24■□□□□ 0.03
CCDC88C-208ENST00000554165 NBPF15Q8N660 670 aa15.24■□□□□ 0.03
CCDC88C-208ENST00000554165 MRS2Q9HD23 443 aa15.24■□□□□ 0.03
CCDC88C-208ENST00000554165 TBC1D2BQ9UPU7 963 aa15.24■□□□□ 0.03
CCDC88C-208ENST00000554165 PNISRQ8TF01 805 aaKnown RBP15.23■□□□□ 0.03
CCDC88C-208ENST00000554165 NARFQ9UHQ1 456 aa15.23■□□□□ 0.03
CCDC88C-208ENST00000554165 TSPYL4Q9UJ04 414 aa15.23■□□□□ 0.03
CCDC88C-208ENST00000554165 CD2APQ9Y5K6 639 aa15.23■□□□□ 0.03
CCDC88C-208ENST00000554165 KDM3BQ7LBC6 1761 aa15.23■□□□□ 0.03
CCDC88C-208ENST00000554165 GIGYF1O75420 1035 aaPredicted RBP15.22■□□□□ 0.03
CCDC88C-208ENST00000554165 TM4SF1P30408 202 aa15.22■□□□□ 0.03
CCDC88C-208ENST00000554165 LAS1LQ9Y4W2 734 aaKnown RBP15.22■□□□□ 0.03
CCDC88C-208ENST00000554165 YBX3P16989 372 aaKnown RBP eCLIP15.21■□□□□ 0.03
CCDC88C-208ENST00000554165 LMOD3Q0VAK6 560 aa15.21■□□□□ 0.03
CCDC88C-208ENST00000554165 NFIXQ14938 502 aa15.21■□□□□ 0.03
CCDC88C-208ENST00000554165 KRT24Q2M2I5 525 aa15.21■□□□□ 0.03
CCDC88C-208ENST00000554165 PARP3Q9Y6F1 533 aa15.21■□□□□ 0.03
CCDC88C-208ENST00000554165 POLRMTO00411 1230 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-208ENST00000554165 IL6STP40189 918 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-208ENST00000554165 GPR162Q16538 588 aa15.2■□□□□ 0.02
CCDC88C-208ENST00000554165 BICDL1Q6ZP65 573 aa15.2■□□□□ 0.02
CCDC88C-208ENST00000554165 A0A0G2JLW4 131 aa15.19■□□□□ 0.02
CCDC88C-208ENST00000554165 CAMTA2O94983 1202 aa15.19■□□□□ 0.02
CCDC88C-208ENST00000554165 NGEFQ8N5V2 710 aa15.19■□□□□ 0.02
CCDC88C-208ENST00000554165 A0A087WZG4 1122 aa15.18■□□□□ 0.02
CCDC88C-208ENST00000554165 DCAF8L1A6NGE4 600 aa15.18■□□□□ 0.02
CCDC88C-208ENST00000554165 CHL1O00533 1208 aa15.18■□□□□ 0.02
CCDC88C-208ENST00000554165 TBC1D9BQ66K14 1250 aa15.18■□□□□ 0.02
CCDC88C-208ENST00000554165 DZIP3Q86Y13 1208 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-208ENST00000554165 C10orf71Q711Q0 1435 aa15.17■□□□□ 0.02
CCDC88C-208ENST00000554165 GOLGB1Q14789 3259 aaKnown RBP15.17■□□□□ 0.02
CCDC88C-208ENST00000554165 PIAS4Q8N2W9 510 aaPredicted RBP15.17■□□□□ 0.02
CCDC88C-208ENST00000554165 NECTIN2Q92692 538 aa15.17■□□□□ 0.02
CCDC88C-208ENST00000554165 PXDNLA1KZ92 1463 aa15.16■□□□□ 0.02
CCDC88C-208ENST00000554165 ANXA1P04083 346 aa15.16■□□□□ 0.02
CCDC88C-208ENST00000554165 MYL6BP14649 208 aa15.16■□□□□ 0.02
CCDC88C-208ENST00000554165 DPEP1P16444 411 aa15.16■□□□□ 0.02
CCDC88C-208ENST00000554165 EIF2S2P20042 333 aaKnown RBP15.16■□□□□ 0.02
CCDC88C-208ENST00000554165 CCDC24Q8N4L8 307 aa15.16■□□□□ 0.02
CCDC88C-208ENST00000554165 UTRNP46939 3433 aa15.15■□□□□ 0.02
CCDC88C-208ENST00000554165 SERPINB2P05120 415 aa15.15■□□□□ 0.02
CCDC88C-208ENST00000554165 PROSER3Q2NL68 480 aa15.15■□□□□ 0.02
CCDC88C-208ENST00000554165 MBIPQ9NS73 344 aa15.15■□□□□ 0.02
CCDC88C-208ENST00000554165 KIAA1551Q9HCM1 1747 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 LAMB4A4D0S4 1761 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 N4BP2Q86UW6 1770 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 ZNF853P0CG23 659 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 CHRNA5P30532 468 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 PDIA6Q15084 440 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 HLFQ16534 295 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 TTLL7Q6ZT98 887 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 NPM2Q86SE8 214 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 FAM9BQ8IZU0 186 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 BABAM1Q9NWV8 329 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 SALL2Q9Y467 1007 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 KIF13BQ9NQT8 1826 aa15.14■□□□□ 0.01
CCDC88C-208ENST00000554165 CARMIL3Q8ND23 1372 aa15.13■□□□□ 0.01
CCDC88C-208ENST00000554165 SCN7AQ01118 1682 aa15.13■□□□□ 0.01
CCDC88C-208ENST00000554165 AFDNP55196 1824 aaKnown RBP15.13■□□□□ 0.01
CCDC88C-208ENST00000554165 KCNA3P22001 575 aa15.13■□□□□ 0.01
CCDC88C-208ENST00000554165 YY1P25490 414 aa15.13■□□□□ 0.01
CCDC88C-208ENST00000554165 CFAP44Q96MT7 982 aa15.13■□□□□ 0.01
CCDC88C-208ENST00000554165 TGFB2P61812 414 aa15.12■□□□□ 0.01
CCDC88C-208ENST00000554165 LRP10Q7Z4F1 713 aa15.12■□□□□ 0.01
CCDC88C-208ENST00000554165 BCORQ6W2J9 1755 aa15.11■□□□□ 0.01
CCDC88C-208ENST00000554165 ELL2O00472 640 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms