RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 TRAPPC3LQ5T215 181 aa29.88■■■□□ 2.37
TDP1-206ENST00000553569 TEX13AQ9BXU3 409 aaPredicted RBP29.88■■■□□ 2.37
TDP1-206ENST00000553569 ZBTB1Q9Y2K1 713 aa29.88■■■□□ 2.37
TDP1-206ENST00000553569 PRAMEF22A3QJZ6 481 aa29.87■■■□□ 2.37
TDP1-206ENST00000553569 PPP1R1BQ9UD71 204 aaPredicted RBP29.87■■■□□ 2.37
TDP1-206ENST00000553569 LAS1LQ9Y4W2 734 aaKnown RBP29.87■■■□□ 2.37
TDP1-206ENST00000553569 COL24A1Q17RW2 1714 aa29.86■■■□□ 2.37
TDP1-206ENST00000553569 LAMB4A4D0S4 1761 aa29.86■■■□□ 2.37
TDP1-206ENST00000553569 SNRPA1P09661 255 aaKnown RBP29.86■■■□□ 2.37
TDP1-206ENST00000553569 ADRA2BP18089 450 aa29.85■■■□□ 2.37
TDP1-206ENST00000553569 CANXP27824 592 aaKnown RBP29.85■■■□□ 2.37
TDP1-206ENST00000553569 ARHGEF1Q92888 912 aaKnown RBP29.85■■■□□ 2.37
TDP1-206ENST00000553569 EIF4A1P60842 406 aaKnown RBP29.84■■■□□ 2.37
TDP1-206ENST00000553569 SOS1Q07889 1333 aaPredicted RBP29.84■■■□□ 2.37
TDP1-206ENST00000553569 SGIP1Q9BQI5 828 aa29.83■■■□□ 2.37
TDP1-206ENST00000553569 USP16Q9Y5T5 823 aa29.83■■■□□ 2.37
TDP1-206ENST00000553569 SRCAPQ6ZRS2 3230 aa29.83■■■□□ 2.37
TDP1-206ENST00000553569 POLD1P28340 1107 aa29.82■■■□□ 2.36
TDP1-206ENST00000553569 RFC4P35249 363 aa29.82■■■□□ 2.36
TDP1-206ENST00000553569 BABAM1Q9NWV8 329 aa29.82■■■□□ 2.36
TDP1-206ENST00000553569 COL15A1P39059 1388 aa29.81■■■□□ 2.36
TDP1-206ENST00000553569 CCER2I3L3R5 266 aa29.81■■■□□ 2.36
TDP1-206ENST00000553569 A1BGP04217 495 aa29.8■■■□□ 2.36
TDP1-206ENST00000553569 ZNF330Q9Y3S2 320 aaPredicted RBP29.8■■■□□ 2.36
TDP1-206ENST00000553569 SALL2Q9Y467 1007 aaPredicted RBP29.79■■■□□ 2.36
TDP1-206ENST00000553569 CHL1O00533 1208 aa29.78■■■□□ 2.36
TDP1-206ENST00000553569 GIGYF1O75420 1035 aaPredicted RBP29.78■■■□□ 2.36
TDP1-206ENST00000553569 PIP4K2AP48426 406 aaPredicted RBP29.78■■■□□ 2.36
TDP1-206ENST00000553569 CALD1Q05682 793 aaKnown RBP29.78■■■□□ 2.36
TDP1-206ENST00000553569 SRP68Q9UHB9 627 aaKnown RBP29.78■■■□□ 2.36
TDP1-206ENST00000553569 ARXQ96QS3 562 aa29.77■■■□□ 2.36
TDP1-206ENST00000553569 MIER1Q8N108 512 aa29.76■■■□□ 2.35
TDP1-206ENST00000553569 USP42Q9H9J4 1324 aaKnown RBP29.75■■■□□ 2.35
TDP1-206ENST00000553569 CCDC27Q2M243 656 aa29.75■■■□□ 2.35
TDP1-206ENST00000553569 CFAP44Q96MT7 982 aa29.75■■■□□ 2.35
TDP1-206ENST00000553569 EIF5P55010 431 aaKnown RBP29.74■■■□□ 2.35
TDP1-206ENST00000553569 IFT57Q9NWB7 429 aa29.74■■■□□ 2.35
TDP1-206ENST00000553569 GYS1P13807 737 aa29.73■■■□□ 2.35
TDP1-206ENST00000553569 WWC1Q8IX03 1113 aa29.73■■■□□ 2.35
TDP1-206ENST00000553569 MBIPQ9NS73 344 aa29.73■■■□□ 2.35
TDP1-206ENST00000553569 ZPR1O75312 459 aa29.72■■■□□ 2.35
TDP1-206ENST00000553569 IL6STP40189 918 aaPredicted RBP29.72■■■□□ 2.35
TDP1-206ENST00000553569 GNAI1P63096 354 aa29.72■■■□□ 2.35
TDP1-206ENST00000553569 KRT24Q2M2I5 525 aa29.72■■■□□ 2.35
TDP1-206ENST00000553569 ZNF853P0CG23 659 aa29.71■■■□□ 2.35
TDP1-206ENST00000553569 NPM2Q86SE8 214 aaKnown RBP29.71■■■□□ 2.35
TDP1-206ENST00000553569 KLHL34Q8N239 644 aa29.71■■■□□ 2.35
TDP1-206ENST00000553569 A0A087WZG4 1122 aa29.7■■■□□ 2.35
TDP1-206ENST00000553569 USPL1Q5W0Q7 1092 aa29.7■■■□□ 2.35
TDP1-206ENST00000553569 SCN7AQ01118 1682 aa29.69■■■□□ 2.34
TDP1-206ENST00000553569 NCBP3Q53F19 620 aaKnown RBP29.69■■■□□ 2.34
TDP1-206ENST00000553569 NLGN1Q8N2Q7 840 aa29.69■■■□□ 2.34
TDP1-206ENST00000553569 FHDC1Q9C0D6 1143 aaPredicted RBP29.69■■■□□ 2.34
TDP1-206ENST00000553569 NARFQ9UHQ1 456 aa29.69■■■□□ 2.34
TDP1-206ENST00000553569 NBPF26B4DH59 902 aa29.68■■■□□ 2.34
TDP1-206ENST00000553569 MMP10P09238 476 aa29.68■■■□□ 2.34
TDP1-206ENST00000553569 EIF2S2P20042 333 aaKnown RBP29.68■■■□□ 2.34
TDP1-206ENST00000553569 FKBP8Q14318 412 aa29.68■■■□□ 2.34
TDP1-206ENST00000553569 NBPF10Q6P3W6 841 aaKnown RBP29.68■■■□□ 2.34
TDP1-206ENST00000553569 NBPF15Q8N660 670 aa29.68■■■□□ 2.34
TDP1-206ENST00000553569 TBC1D2BQ9UPU7 963 aa29.67■■■□□ 2.34
TDP1-206ENST00000553569 BCORQ6W2J9 1755 aa29.65■■■□□ 2.34
TDP1-206ENST00000553569 NECTIN2Q92692 538 aa29.65■■■□□ 2.34
TDP1-206ENST00000553569 DZIP3Q86Y13 1208 aaKnown RBP29.64■■■□□ 2.34
TDP1-206ENST00000553569 MYL6BP14649 208 aa29.63■■■□□ 2.33
TDP1-206ENST00000553569 NGEFQ8N5V2 710 aa29.63■■■□□ 2.33
TDP1-206ENST00000553569 TSR2Q969E8 191 aaKnown RBP29.63■■■□□ 2.33
TDP1-206ENST00000553569 BCL2L12Q9HB09 334 aa29.62■■■□□ 2.33
TDP1-206ENST00000553569 IL16Q14005 1332 aa29.62■■■□□ 2.33
TDP1-206ENST00000553569 DUSP27Q5VZP5 1158 aa29.61■■■□□ 2.33
TDP1-206ENST00000553569 SYT17Q9BSW7 474 aa29.61■■■□□ 2.33
TDP1-206ENST00000553569 ERBB4Q15303 1308 aa29.61■■■□□ 2.33
TDP1-206ENST00000553569 PARP3Q9Y6F1 533 aa29.6■■■□□ 2.33
TDP1-206ENST00000553569 CAMTA2O94983 1202 aa29.59■■■□□ 2.33
TDP1-206ENST00000553569 WDR63Q8IWG1 891 aa29.59■■■□□ 2.33
TDP1-206ENST00000553569 ELL2O00472 640 aaPredicted RBP29.58■■■□□ 2.33
TDP1-206ENST00000553569 ANXA1P04083 346 aa29.58■■■□□ 2.33
TDP1-206ENST00000553569 HOXB7P09629 217 aa29.58■■■□□ 2.33
TDP1-206ENST00000553569 DDR1Q08345 913 aa29.58■■■□□ 2.33
TDP1-206ENST00000553569 HDGFL1Q5TGJ6 251 aa29.58■■■□□ 2.33
TDP1-206ENST00000553569 NFIXQ14938 502 aa29.57■■■□□ 2.32
TDP1-206ENST00000553569 PROSER3Q2NL68 480 aa29.57■■■□□ 2.32
TDP1-206ENST00000553569 BICDL1Q6ZP65 573 aa29.57■■■□□ 2.32
TDP1-206ENST00000553569 C8orf58Q8NAV2 365 aa29.56■■■□□ 2.32
TDP1-206ENST00000553569 FANCIQ9NVI1 1328 aa29.55■■■□□ 2.32
TDP1-206ENST00000553569 PDIA6Q15084 440 aa29.55■■■□□ 2.32
TDP1-206ENST00000553569 NLGN2Q8NFZ4 835 aa29.55■■■□□ 2.32
TDP1-206ENST00000553569 POLRMTO00411 1230 aaKnown RBP29.54■■■□□ 2.32
TDP1-206ENST00000553569 TM4SF1P30408 202 aa29.54■■■□□ 2.32
TDP1-206ENST00000553569 TBC1D9BQ66K14 1250 aa29.54■■■□□ 2.32
TDP1-206ENST00000553569 CHPF2Q9P2E5 772 aa29.54■■■□□ 2.32
TDP1-206ENST00000553569 AFDNP55196 1824 aaKnown RBP29.53■■■□□ 2.32
TDP1-206ENST00000553569 KIF6Q6ZMV9 814 aa29.53■■■□□ 2.32
TDP1-206ENST00000553569 TTLL7Q6ZT98 887 aa29.53■■■□□ 2.32
TDP1-206ENST00000553569 SPINK5Q9NQ38 1064 aaPredicted RBP29.52■■■□□ 2.32
TDP1-206ENST00000553569 ZNF652Q9Y2D9 606 aa29.52■■■□□ 2.32
TDP1-206ENST00000553569 CD2APQ9Y5K6 639 aa29.52■■■□□ 2.32
TDP1-206ENST00000553569 C10orf71Q711Q0 1435 aa29.52■■■□□ 2.32
TDP1-206ENST00000553569 ZNF521Q96K83 1311 aa29.51■■■□□ 2.32
TDP1-206ENST00000553569 KIF13BQ9NQT8 1826 aa29.51■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms