RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 KDM3BQ7LBC6 1761 aa24.81■■□□□ 1.56
HDAC4-217ENST00000553145 TMPOP42166 694 aaKnown RBP24.81■■□□□ 1.56
HDAC4-217ENST00000553145 MIS18AQ9NYP9 233 aa24.81■■□□□ 1.56
HDAC4-217ENST00000553145 COL15A1P39059 1388 aa24.8■■□□□ 1.56
HDAC4-217ENST00000553145 PRAMEF22A3QJZ6 481 aa24.8■■□□□ 1.56
HDAC4-217ENST00000553145 STARD3NLO95772 234 aa24.8■■□□□ 1.56
HDAC4-217ENST00000553145 MMP10P09238 476 aa24.8■■□□□ 1.56
HDAC4-217ENST00000553145 RIPK4P57078 832 aa24.8■■□□□ 1.56
HDAC4-217ENST00000553145 CCDC184Q52MB2 194 aa24.8■■□□□ 1.56
HDAC4-217ENST00000553145 CANXP27824 592 aaKnown RBP24.79■■□□□ 1.56
HDAC4-217ENST00000553145 NLGN1Q8N2Q7 840 aa24.79■■□□□ 1.56
HDAC4-217ENST00000553145 TEX13AQ9BXU3 409 aaPredicted RBP24.79■■□□□ 1.56
HDAC4-217ENST00000553145 RRP7AQ9Y3A4 280 aaKnown RBP24.79■■□□□ 1.56
HDAC4-217ENST00000553145 RUNDC1Q96C34 613 aa24.78■■□□□ 1.56
HDAC4-217ENST00000553145 FKBP8Q14318 412 aa24.77■■□□□ 1.56
HDAC4-217ENST00000553145 USP16Q9Y5T5 823 aa24.77■■□□□ 1.56
HDAC4-217ENST00000553145 EIF5P55010 431 aaKnown RBP24.76■■□□□ 1.55
HDAC4-217ENST00000553145 USPL1Q5W0Q7 1092 aa24.76■■□□□ 1.55
HDAC4-217ENST00000553145 CD2APQ9Y5K6 639 aa24.76■■□□□ 1.55
HDAC4-217ENST00000553145 A1BGP04217 495 aa24.75■■□□□ 1.55
HDAC4-217ENST00000553145 DCAF8L1A6NGE4 600 aa24.74■■□□□ 1.55
HDAC4-217ENST00000553145 SNRPA1P09661 255 aaKnown RBP24.74■■□□□ 1.55
HDAC4-217ENST00000553145 NEUROD2Q15784 382 aa24.74■■□□□ 1.55
HDAC4-217ENST00000553145 PNISRQ8TF01 805 aaKnown RBP24.74■■□□□ 1.55
HDAC4-217ENST00000553145 NARFQ9UHQ1 456 aa24.74■■□□□ 1.55
HDAC4-217ENST00000553145 ZPR1O75312 459 aa24.73■■□□□ 1.55
HDAC4-217ENST00000553145 ANP32CO43423 234 aa24.72■■□□□ 1.55
HDAC4-217ENST00000553145 PIP4K2AP48426 406 aaPredicted RBP24.72■■□□□ 1.55
HDAC4-217ENST00000553145 DDR1Q08345 913 aa24.72■■□□□ 1.55
HDAC4-217ENST00000553145 LMOD3Q0VAK6 560 aa24.72■■□□□ 1.55
HDAC4-217ENST00000553145 BCL2L12Q9HB09 334 aa24.72■■□□□ 1.55
HDAC4-217ENST00000553145 TRIM35Q9UPQ4 493 aa24.72■■□□□ 1.55
HDAC4-217ENST00000553145 LAMB4A4D0S4 1761 aa24.72■■□□□ 1.55
HDAC4-217ENST00000553145 KIF13BQ9NQT8 1826 aa24.71■■□□□ 1.55
HDAC4-217ENST00000553145 SCN7AQ01118 1682 aa24.71■■□□□ 1.55
HDAC4-217ENST00000553145 C10orf71Q711Q0 1435 aa24.7■■□□□ 1.55
HDAC4-217ENST00000553145 IL6STP40189 918 aaPredicted RBP24.7■■□□□ 1.54
HDAC4-217ENST00000553145 EIF4A1P60842 406 aaKnown RBP24.7■■□□□ 1.54
HDAC4-217ENST00000553145 ZNF330Q9Y3S2 320 aaPredicted RBP24.7■■□□□ 1.54
HDAC4-217ENST00000553145 PARP3Q9Y6F1 533 aa24.7■■□□□ 1.54
HDAC4-217ENST00000553145 KIAA1551Q9HCM1 1747 aa24.69■■□□□ 1.54
HDAC4-217ENST00000553145 TM4SF1P30408 202 aa24.69■■□□□ 1.54
HDAC4-217ENST00000553145 PELP1Q8IZL8 1130 aaKnown RBP24.68■■□□□ 1.54
HDAC4-217ENST00000553145 TSPYL4Q9UJ04 414 aa24.68■■□□□ 1.54
HDAC4-217ENST00000553145 A0A087WZG4 1122 aa24.67■■□□□ 1.54
HDAC4-217ENST00000553145 NBPF26B4DH59 902 aa24.67■■□□□ 1.54
HDAC4-217ENST00000553145 POLRMTO00411 1230 aaKnown RBP24.67■■□□□ 1.54
HDAC4-217ENST00000553145 GIGYF1O75420 1035 aaPredicted RBP24.67■■□□□ 1.54
HDAC4-217ENST00000553145 GPR162Q16538 588 aa24.67■■□□□ 1.54
HDAC4-217ENST00000553145 NBPF10Q6P3W6 841 aaKnown RBP24.67■■□□□ 1.54
HDAC4-217ENST00000553145 NBPF15Q8N660 670 aa24.67■■□□□ 1.54
HDAC4-217ENST00000553145 TBC1D2BQ9UPU7 963 aa24.67■■□□□ 1.54
HDAC4-217ENST00000553145 PXDNLA1KZ92 1463 aa24.66■■□□□ 1.54
HDAC4-217ENST00000553145 YBX3P16989 372 aaKnown RBP eCLIP24.66■■□□□ 1.54
HDAC4-217ENST00000553145 NFIXQ14938 502 aa24.66■■□□□ 1.54
HDAC4-217ENST00000553145 BCORQ6W2J9 1755 aa24.65■■□□□ 1.54
HDAC4-217ENST00000553145 APAF1O14727 1248 aa24.65■■□□□ 1.54
HDAC4-217ENST00000553145 MRS2Q9HD23 443 aa24.64■■□□□ 1.54
HDAC4-217ENST00000553145 N4BP2Q86UW6 1770 aaPredicted RBP24.63■■□□□ 1.53
HDAC4-217ENST00000553145 CAMTA2O94983 1202 aa24.63■■□□□ 1.53
HDAC4-217ENST00000553145 BABAM1Q9NWV8 329 aa24.63■■□□□ 1.53
HDAC4-217ENST00000553145 WWC3Q9ULE0 1092 aa24.63■■□□□ 1.53
HDAC4-217ENST00000553145 NRXN2Q9P2S2 1712 aa24.62■■□□□ 1.53
HDAC4-217ENST00000553145 DZIP3Q86Y13 1208 aaKnown RBP24.62■■□□□ 1.53
HDAC4-217ENST00000553145 AFDNP55196 1824 aaKnown RBP24.62■■□□□ 1.53
HDAC4-217ENST00000553145 CHL1O00533 1208 aa24.6■■□□□ 1.53
HDAC4-217ENST00000553145 TBC1D9BQ66K14 1250 aa24.6■■□□□ 1.53
HDAC4-217ENST00000553145 BICDL1Q6ZP65 573 aa24.6■■□□□ 1.53
HDAC4-217ENST00000553145 NPM2Q86SE8 214 aaKnown RBP24.6■■□□□ 1.53
HDAC4-217ENST00000553145 TGFB2P61812 414 aa24.59■■□□□ 1.53
HDAC4-217ENST00000553145 LAS1LQ9Y4W2 734 aaKnown RBP24.59■■□□□ 1.53
HDAC4-217ENST00000553145 A0A0G2JLW4 131 aa24.58■■□□□ 1.53
HDAC4-217ENST00000553145 SERPINB2P05120 415 aa24.58■■□□□ 1.53
HDAC4-217ENST00000553145 YY1P25490 414 aa24.58■■□□□ 1.53
HDAC4-217ENST00000553145 SENP3-EIF4A1A0A087X0R7 540 aa24.57■■□□□ 1.52
HDAC4-217ENST00000553145 DPEP1P16444 411 aa24.57■■□□□ 1.52
HDAC4-217ENST00000553145 KRT24Q2M2I5 525 aa24.57■■□□□ 1.52
HDAC4-217ENST00000553145 CARMIL3Q8ND23 1372 aa24.55■■□□□ 1.52
HDAC4-217ENST00000553145 BRCA1P38398 1863 aaKnown RBP24.55■■□□□ 1.52
HDAC4-217ENST00000553145 CHD4Q14839 1912 aa24.55■■□□□ 1.52
HDAC4-217ENST00000553145 KCNA3P22001 575 aa24.54■■□□□ 1.52
HDAC4-217ENST00000553145 NGEFQ8N5V2 710 aa24.54■■□□□ 1.52
HDAC4-217ENST00000553145 CFAP44Q96MT7 982 aa24.54■■□□□ 1.52
HDAC4-217ENST00000553145 GRIN3BO60391 1043 aa24.53■■□□□ 1.52
HDAC4-217ENST00000553145 MYL6BP14649 208 aa24.53■■□□□ 1.52
HDAC4-217ENST00000553145 EIF2S2P20042 333 aaKnown RBP24.53■■□□□ 1.52
HDAC4-217ENST00000553145 UTRNP46939 3433 aa24.52■■□□□ 1.52
HDAC4-217ENST00000553145 ZNF853P0CG23 659 aa24.52■■□□□ 1.52
HDAC4-217ENST00000553145 CHRNA5P30532 468 aa24.52■■□□□ 1.52
HDAC4-217ENST00000553145 MBIPQ9NS73 344 aa24.52■■□□□ 1.52
HDAC4-217ENST00000553145 ERBB4Q15303 1308 aa24.52■■□□□ 1.52
HDAC4-217ENST00000553145 PDIA6Q15084 440 aa24.51■■□□□ 1.51
HDAC4-217ENST00000553145 CLEC4GQ6UXB4 293 aa24.51■■□□□ 1.51
HDAC4-217ENST00000553145 GOLGB1Q14789 3259 aaKnown RBP24.51■■□□□ 1.51
HDAC4-217ENST00000553145 HLFQ16534 295 aa24.5■■□□□ 1.51
HDAC4-217ENST00000553145 PROSER3Q2NL68 480 aa24.5■■□□□ 1.51
HDAC4-217ENST00000553145 TTLL7Q6ZT98 887 aa24.5■■□□□ 1.51
HDAC4-217ENST00000553145 LRP10Q7Z4F1 713 aa24.5■■□□□ 1.51
HDAC4-217ENST00000553145 NECTIN2Q92692 538 aa24.5■■□□□ 1.51
HDAC4-217ENST00000553145 SETDB2Q96T68 719 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms