RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 MLECQ14165 292 aa6.24□□□□□ -1.41
LIMA1-208ENST00000551691 OSBPL3Q9H4L5 887 aa6.24□□□□□ -1.41
LIMA1-208ENST00000551691 GPAMQ9HCL2 828 aa6.24□□□□□ -1.41
LIMA1-208ENST00000551691 SNRKQ9NRH2 765 aa6.24□□□□□ -1.41
LIMA1-208ENST00000551691 MADDQ8WXG6 1647 aa6.24□□□□□ -1.41
LIMA1-208ENST00000551691 CD109Q6YHK3 1445 aa6.24□□□□□ -1.41
LIMA1-208ENST00000551691 STAU1O95793 577 aaKnown RBP6.23□□□□□ -1.41
LIMA1-208ENST00000551691 NBPF10Q6P3W6 841 aaKnown RBP6.23□□□□□ -1.41
LIMA1-208ENST00000551691 AEBP1Q8IUX7 1158 aa6.23□□□□□ -1.41
LIMA1-208ENST00000551691 NBPF15Q8N660 670 aa6.23□□□□□ -1.41
LIMA1-208ENST00000551691 MTMR14Q8NCE2 650 aa6.23□□□□□ -1.41
LIMA1-208ENST00000551691 CDCA7Q9BWT1 371 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-208ENST00000551691 MBIPQ9NS73 344 aa6.23□□□□□ -1.41
LIMA1-208ENST00000551691 ZNF330Q9Y3S2 320 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-208ENST00000551691 RUSC2Q8N2Y8 1516 aa6.23□□□□□ -1.41
LIMA1-208ENST00000551691 HSPA1LP34931 641 aa6.22□□□□□ -1.41
LIMA1-208ENST00000551691 CYP2U1Q7Z449 544 aa6.22□□□□□ -1.41
LIMA1-208ENST00000551691 NEDD1Q8NHV4 660 aa6.22□□□□□ -1.41
LIMA1-208ENST00000551691 ACDQ96AP0 544 aa6.22□□□□□ -1.41
LIMA1-208ENST00000551691 SCARF2Q96GP6 870 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-208ENST00000551691 POM121Q96HA1 1249 aa6.22□□□□□ -1.41
LIMA1-208ENST00000551691 GRIP2Q9C0E4 1043 aa6.22□□□□□ -1.41
LIMA1-208ENST00000551691 TIMMDC1Q9NPL8 285 aa6.22□□□□□ -1.41
LIMA1-208ENST00000551691 DYRK1BQ9Y463 629 aa6.22□□□□□ -1.41
LIMA1-208ENST00000551691 WRNQ14191 1432 aaPredicted RBP eCLIP6.22□□□□□ -1.41
LIMA1-208ENST00000551691 TNIKQ9UKE5 1360 aa6.21□□□□□ -1.41
LIMA1-208ENST00000551691 SRCAPQ6ZRS2 3230 aa6.21□□□□□ -1.42
LIMA1-208ENST00000551691 GPC1P35052 558 aa6.21□□□□□ -1.42
LIMA1-208ENST00000551691 CLN3Q13286 438 aa6.21□□□□□ -1.42
LIMA1-208ENST00000551691 RNF20Q5VTR2 975 aa6.21□□□□□ -1.42
LIMA1-208ENST00000551691 FOXR1Q6PIV2 292 aa6.21□□□□□ -1.42
LIMA1-208ENST00000551691 CCDC85AQ96PX6 553 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-208ENST00000551691 ESF1Q9H501 851 aaKnown RBP6.21□□□□□ -1.42
LIMA1-208ENST00000551691 DNMT3AQ9Y6K1 912 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-208ENST00000551691 UACAQ9BZF9 1416 aa6.21□□□□□ -1.42
LIMA1-208ENST00000551691 RIMS1Q86UR5 1692 aaKnown RBP6.2□□□□□ -1.42
LIMA1-208ENST00000551691 WASLO00401 505 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-208ENST00000551691 IL2RAP01589 272 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 THBS1P07996 1170 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 MX2P20592 715 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 PDE4CQ08493 712 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 TSGA10IPQ3SY00 556 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 BANK1Q8NDB2 785 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 TRERF1Q96PN7 1200 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 NUCKS1Q9H1E3 243 aaKnown RBP6.2□□□□□ -1.42
LIMA1-208ENST00000551691 ACIN1Q9UKV3 1341 aaKnown RBP6.2□□□□□ -1.42
LIMA1-208ENST00000551691 ERICH3Q5RHP9 1530 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 KIAA0586Q9BVV6 1533 aa6.2□□□□□ -1.42
LIMA1-208ENST00000551691 BCORL1Q5H9F3 1711 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 STRCQ7RTU9 1775 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 YEATS2Q9ULM3 1422 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 H7C1W4 665 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 PIP4K2BP78356 416 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 KANK3Q6NY19 840 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 TAS1R3Q7RTX0 852 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 CNKSR1Q969H4 720 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 NDUFB9Q9Y6M9 179 aa6.19□□□□□ -1.42
LIMA1-208ENST00000551691 F11P03951 625 aa6.18□□□□□ -1.42
LIMA1-208ENST00000551691 BCRP11274 1271 aa6.18□□□□□ -1.42
LIMA1-208ENST00000551691 CENPCQ03188 943 aa6.18□□□□□ -1.42
LIMA1-208ENST00000551691 CALR3Q96L12 384 aaKnown RBP6.18□□□□□ -1.42
LIMA1-208ENST00000551691 ENAMQ9NRM1 1142 aa6.18□□□□□ -1.42
LIMA1-208ENST00000551691 RGS17Q9UGC6 210 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-208ENST00000551691 COG6Q9Y2V7 657 aa6.18□□□□□ -1.42
LIMA1-208ENST00000551691 UHRF1BP1LA0JNW5 1464 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 MAGI3Q5TCQ9 1506 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 KDM5BQ9UGL1 1544 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 SPATA31C2B4DYI2 1134 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 ABL2P42684 1182 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 PLA2G4EQ3MJ16 856 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 DCAF5Q96JK2 942 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 ZSCAN10Q96SZ4 725 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-208ENST00000551691 TRAIPQ9BWF2 469 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 RUBCNLQ9H714 662 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 CEP126Q9P2H0 1117 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 TBC1D2BQ9UPU7 963 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 MED1Q15648 1581 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-208ENST00000551691 LTBP4Q8N2S1 1624 aa6.17□□□□□ -1.42
LIMA1-208ENST00000551691 ITGB2P05107 769 aa6.16□□□□□ -1.42
LIMA1-208ENST00000551691 SNRPNP63162 240 aaKnown RBP6.16□□□□□ -1.42
LIMA1-208ENST00000551691 FNBP4Q8N3X1 1017 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-208ENST00000551691 GMCL1Q96IK5 515 aa6.16□□□□□ -1.42
LIMA1-208ENST00000551691 ESYT1Q9BSJ8 1104 aa6.16□□□□□ -1.42
LIMA1-208ENST00000551691 ZCCHC11Q5TAX3 1644 aaKnown RBP6.16□□□□□ -1.42
LIMA1-208ENST00000551691 WDR7Q9Y4E6 1490 aa6.15□□□□□ -1.42
LIMA1-208ENST00000551691 SHISA8B8ZZ34 492 aa6.15□□□□□ -1.42
LIMA1-208ENST00000551691 MYCP01106 439 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-208ENST00000551691 C4orf17Q53FE4 359 aa6.15□□□□□ -1.42
LIMA1-208ENST00000551691 C1orf229Q6ZS94 237 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-208ENST00000551691 PODNQ7Z5L7 613 aa6.15□□□□□ -1.42
LIMA1-208ENST00000551691 TRIM52Q96A61 297 aa6.15□□□□□ -1.42
LIMA1-208ENST00000551691 GDPD2Q9HCC8 539 aa6.15□□□□□ -1.42
LIMA1-208ENST00000551691 ZNF335Q9H4Z2 1342 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-208ENST00000551691 ARAP3Q8WWN8 1544 aa6.15□□□□□ -1.43
LIMA1-208ENST00000551691 PHF20L1A8MW92 1017 aa6.14□□□□□ -1.43
LIMA1-208ENST00000551691 PPP1R15AO75807 674 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-208ENST00000551691 GNRH1P01148 92 aa6.14□□□□□ -1.43
LIMA1-208ENST00000551691 OXLD1Q5BKU9 147 aa6.14□□□□□ -1.43
LIMA1-208ENST00000551691 TMCO4Q5TGY1 634 aa6.14□□□□□ -1.43
LIMA1-208ENST00000551691 TMEM214Q6NUQ4 689 aaKnown RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms