RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	HRH3	Q9Y5N1	445 aa		4.99	□□□□□ -1.61
PTCH1-223	ENST00000551623	HMGXB3	Q12766	1538 aa		4.98	□□□□□ -1.61
PTCH1-223	ENST00000551623	ZBBX	A8MT70	800 aa		4.98	□□□□□ -1.61
PTCH1-223	ENST00000551623	COBL	O75128	1261 aa		4.98	□□□□□ -1.61
PTCH1-223	ENST00000551623	USP17L8	P0C7I0	530 aa		4.98	□□□□□ -1.61
PTCH1-223	ENST00000551623	FAM182B	Q5T319	152 aa		4.98	□□□□□ -1.61
PTCH1-223	ENST00000551623	MCTP1	Q6DN14	999 aa		4.98	□□□□□ -1.61
PTCH1-223	ENST00000551623	ZCCHC2	Q9C0B9	1178 aa	Known RBP	4.98	□□□□□ -1.61
PTCH1-223	ENST00000551623	PCDHGC4	Q9Y5F7	938 aa		4.98	□□□□□ -1.61
PTCH1-223	ENST00000551623	H2AFB1	P0C5Y9	115 aa		4.97	□□□□□ -1.61
PTCH1-223	ENST00000551623	H2AFB2	P0C5Z0	115 aa		4.97	□□□□□ -1.61
PTCH1-223	ENST00000551623	NACC1	Q96RE7	527 aa		4.97	□□□□□ -1.61
PTCH1-223	ENST00000551623	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
PTCH1-223	ENST00000551623	FAM229A	H3BQW9	127 aa		4.96	□□□□□ -1.62
PTCH1-223	ENST00000551623	ATXN7	O15265	892 aa	Predicted RBP	4.96	□□□□□ -1.62
PTCH1-223	ENST00000551623	SKIV2L	Q15477	1246 aa	Known RBP	4.96	□□□□□ -1.62
PTCH1-223	ENST00000551623	NLRP8	Q86W28	1048 aa		4.96	□□□□□ -1.62
PTCH1-223	ENST00000551623	XAGE2	Q96GT9	111 aa		4.96	□□□□□ -1.62
PTCH1-223	ENST00000551623	HCN2	Q9UL51	889 aa		4.96	□□□□□ -1.62
PTCH1-223	ENST00000551623	DCDC2B	A2VCK2	349 aa		4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	FBXO45	P0C2W1	286 aa		4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	MAPT	P10636	758 aa	Known RBP	4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	YBX3	P16989	372 aa	Known RBP eCLIP	4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	CD33	P20138	364 aa		4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	PCBP4	P57723	403 aa	Known RBP	4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	TNP2	Q05952	138 aa		4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	ZNF468	Q5VIY5	522 aa	Predicted RBP	4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	PROCA1	Q8NCQ7	364 aa	Predicted RBP	4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	RHBDD1	Q8TEB9	315 aa		4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	LAMC3	Q9Y6N6	1575 aa		4.95	□□□□□ -1.62
PTCH1-223	ENST00000551623	ATAD2B	Q9ULI0	1458 aa		4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	NES	P48681	1621 aa		4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	ELOA3C	A0A087WX78	387 aa	Predicted RBP	4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	ELOA3D	A6NLF2	546 aa	Predicted RBP	4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	TXK	P42681	527 aa		4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	ELOA3B	Q3SY89	546 aa		4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	TBC1D9	Q6ZT07	1266 aa		4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	PPARGC1B	Q86YN6	1023 aa	Known RBP	4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	ELOA3	Q8NG57	546 aa		4.94	□□□□□ -1.62
PTCH1-223	ENST00000551623	KHNYN	O15037	678 aa	Known RBP	4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	PAX4	O43316	350 aa		4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	ATP4A	P20648	1035 aa		4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	ALAS2	P22557	587 aa		4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	MCCD1	P59942	119 aa	Predicted RBP	4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	TRIM28	Q13263	835 aa	Known RBP	4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	GRIK4	Q16099	956 aa		4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	ESCO1	Q5FWF5	840 aa		4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	SH3D19	Q5HYK7	790 aa		4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	TRIM34	Q9BYJ4	488 aa		4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	PRR12	Q9ULL5	1215 aa		4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	ATP1B4	Q9UN42	357 aa	Predicted RBP	4.93	□□□□□ -1.62
PTCH1-223	ENST00000551623	SMARCA2	P51531	1590 aa		4.92	□□□□□ -1.62
PTCH1-223	ENST00000551623	PLA2G4A	P47712	749 aa		4.92	□□□□□ -1.62
PTCH1-223	ENST00000551623	COL9A3	Q14050	684 aa	Predicted RBP	4.92	□□□□□ -1.62
PTCH1-223	ENST00000551623	ADGRE1	Q14246	886 aa		4.92	□□□□□ -1.62
PTCH1-223	ENST00000551623	C1orf216	Q8TAB5	229 aa		4.92	□□□□□ -1.62
PTCH1-223	ENST00000551623	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.92	□□□□□ -1.62
PTCH1-223	ENST00000551623	ARID1B	Q8NFD5	2236 aa	Predicted RBP	4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	C9orf172	C9J069	976 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623		M0R082	166 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	MYC	P01106	439 aa	Predicted RBP	4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	ELN	P15502	786 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	VSIG10	Q8N0Z9	540 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	ZNF417	Q8TAU3	575 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	ZNF592	Q92610	1267 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	FMNL2	Q96PY5	1086 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	ZNF587	Q96SQ5	575 aa	Predicted RBP	4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	MDFI	Q99750	246 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	WDR62	O43379	1518 aa		4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	4.91	□□□□□ -1.62
PTCH1-223	ENST00000551623	PDS5B	Q9NTI5	1447 aa		4.9	□□□□□ -1.62
PTCH1-223	ENST00000551623	FAM157B	P0CG42	384 aa		4.9	□□□□□ -1.63
PTCH1-223	ENST00000551623	MBTPS1	Q14703	1052 aa		4.9	□□□□□ -1.63
PTCH1-223	ENST00000551623	TLR1	Q15399	786 aa		4.9	□□□□□ -1.63
PTCH1-223	ENST00000551623	PRDM6	Q9NQX0	595 aa		4.9	□□□□□ -1.63
PTCH1-223	ENST00000551623	PEG3	Q9GZU2	1588 aa		4.9	□□□□□ -1.63
PTCH1-223	ENST00000551623		A0A1W2PNR3	127 aa		4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	SYT9	Q86SS6	491 aa		4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	TXNRD3	Q86VQ6	643 aa		4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	TP53INP1	Q96A56	240 aa		4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	AIDA	Q96BJ3	306 aa		4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	CDCA7	Q9BWT1	371 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	ETNK1	Q9HBU6	452 aa		4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	MARK1	Q9P0L2	795 aa		4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	RNF112	Q9ULX5	631 aa		4.89	□□□□□ -1.63
PTCH1-223	ENST00000551623	ADARB2-AS1	A8MUL3	147 aa		4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	ALB	P02768	609 aa		4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	NID1	P14543	1247 aa		4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	SELP	P16109	830 aa		4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	NR1H3	Q13133	447 aa		4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	ARSJ	Q5FYB0	599 aa	Predicted RBP	4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	C8orf86	Q6ZUL3	223 aa		4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	STRN4	Q9NRL3	753 aa		4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	MRC2	Q9UBG0	1479 aa		4.88	□□□□□ -1.63
PTCH1-223	ENST00000551623	STAU1	O95793	577 aa	Known RBP	4.87	□□□□□ -1.63
PTCH1-223	ENST00000551623	RFC5	P40937	340 aa		4.87	□□□□□ -1.63
PTCH1-223	ENST00000551623	LAMC2	Q13753	1193 aa		4.87	□□□□□ -1.63
PTCH1-223	ENST00000551623	MICALL1	Q8N3F8	863 aa		4.87	□□□□□ -1.63
PTCH1-223	ENST00000551623	CCDC85A	Q96PX6	553 aa	Predicted RBP	4.87	□□□□□ -1.63
PTCH1-223	ENST00000551623	NIFK	Q9BYG3	293 aa	Known RBP	4.87	□□□□□ -1.63

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