RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 STARD3NLO95772 234 aa27.4■■□□□ 1.98
VPS29-206ENST00000549578 TWISTNBQ3B726 338 aaPredicted RBP27.4■■□□□ 1.98
VPS29-206ENST00000549578 HOXB7P09629 217 aa27.39■■□□□ 1.98
VPS29-206ENST00000549578 EIF2S2P20042 333 aaKnown RBP27.39■■□□□ 1.98
VPS29-206ENST00000549578 CRKLP46109 303 aaKnown RBP27.39■■□□□ 1.98
VPS29-206ENST00000549578 NECTIN2Q92692 538 aa27.39■■□□□ 1.98
VPS29-206ENST00000549578 MYH14Q7Z406 1995 aaKnown RBP27.38■■□□□ 1.97
VPS29-206ENST00000549578 ANO8Q9HCE9 1232 aaPredicted RBP27.37■■□□□ 1.97
VPS29-206ENST00000549578 CNTNAP4Q9C0A0 1308 aa27.37■■□□□ 1.97
VPS29-206ENST00000549578 A1BGP04217 495 aa27.36■■□□□ 1.97
VPS29-206ENST00000549578 ZNF827Q17R98 1081 aa27.36■■□□□ 1.97
VPS29-206ENST00000549578 HDGFL1Q5TGJ6 251 aa27.36■■□□□ 1.97
VPS29-206ENST00000549578 INTS5Q6P9B9 1019 aaKnown RBP27.36■■□□□ 1.97
VPS29-206ENST00000549578 CCDC87Q9NVE4 849 aa27.36■■□□□ 1.97
VPS29-206ENST00000549578 VAMP4O75379 141 aa27.35■■□□□ 1.97
VPS29-206ENST00000549578 PIP4K2AP48426 406 aaPredicted RBP27.35■■□□□ 1.97
VPS29-206ENST00000549578 AK7Q96M32 723 aa27.35■■□□□ 1.97
VPS29-206ENST00000549578 ZBTB1Q9Y2K1 713 aa27.35■■□□□ 1.97
VPS29-206ENST00000549578 AKT1S1Q96B36 256 aa27.34■■□□□ 1.97
VPS29-206ENST00000549578 SOS1Q07889 1333 aaPredicted RBP27.34■■□□□ 1.97
VPS29-206ENST00000549578 HMGB2P26583 209 aaKnown RBP27.33■■□□□ 1.97
VPS29-206ENST00000549578 CANXP27824 592 aaKnown RBP27.33■■□□□ 1.97
VPS29-206ENST00000549578 RC3H1Q5TC82 1133 aaKnown RBP27.33■■□□□ 1.97
VPS29-206ENST00000549578 GNPATO15228 680 aa27.32■■□□□ 1.96
VPS29-206ENST00000549578 SMIM5Q71RC9 77 aa27.31■■□□□ 1.96
VPS29-206ENST00000549578 AMIGO3Q86WK7 504 aa27.31■■□□□ 1.96
VPS29-206ENST00000549578 STK32BQ9NY57 414 aa27.31■■□□□ 1.96
VPS29-206ENST00000549578 NBPF26B4DH59 902 aa27.31■■□□□ 1.96
VPS29-206ENST00000549578 TCERG1O14776 1098 aaKnown RBP27.31■■□□□ 1.96
VPS29-206ENST00000549578 NBPF14Q5TI25 921 aa27.31■■□□□ 1.96
VPS29-206ENST00000549578 NBPF10Q6P3W6 841 aaKnown RBP27.31■■□□□ 1.96
VPS29-206ENST00000549578 NBPF15Q8N660 670 aa27.31■■□□□ 1.96
VPS29-206ENST00000549578 SLC15A2Q16348 729 aa27.3■■□□□ 1.96
VPS29-206ENST00000549578 CHPF2Q9P2E5 772 aa27.3■■□□□ 1.96
VPS29-206ENST00000549578 UBR3Q6ZT12 1888 aa27.29■■□□□ 1.96
VPS29-206ENST00000549578 ANXA1P04083 346 aa27.29■■□□□ 1.96
VPS29-206ENST00000549578 TUBGCP6Q96RT7 1819 aa27.29■■□□□ 1.96
VPS29-206ENST00000549578 TFCP2L1Q9NZI6 479 aa27.29■■□□□ 1.96
VPS29-206ENST00000549578 ERBB4Q15303 1308 aa27.28■■□□□ 1.96
VPS29-206ENST00000549578 MYL6BP14649 208 aa27.28■■□□□ 1.96
VPS29-206ENST00000549578 PDIA6Q15084 440 aa27.28■■□□□ 1.96
VPS29-206ENST00000549578 PROSER3Q2NL68 480 aa27.28■■□□□ 1.96
VPS29-206ENST00000549578 CCDC30Q5VVM6 783 aa27.28■■□□□ 1.96
VPS29-206ENST00000549578 RPS6KA4O75676 772 aa27.27■■□□□ 1.96
VPS29-206ENST00000549578 PHF14O94880 888 aa27.27■■□□□ 1.96
VPS29-206ENST00000549578 RTCBQ9Y3I0 505 aaKnown RBP27.27■■□□□ 1.96
VPS29-206ENST00000549578 ZNF330Q9Y3S2 320 aaPredicted RBP27.27■■□□□ 1.96
VPS29-206ENST00000549578 DDX21Q9NR30 783 aaKnown RBP eCLIP27.26■■□□□ 1.95
VPS29-206ENST00000549578 DBF4Q9UBU7 674 aaPredicted RBP27.26■■□□□ 1.95
VPS29-206ENST00000549578 IL6STP40189 918 aaPredicted RBP27.25■■□□□ 1.95
VPS29-206ENST00000549578 CHMP4AQ9BY43 222 aa27.25■■□□□ 1.95
VPS29-206ENST00000549578 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.24■■□□□ 1.95
VPS29-206ENST00000549578 CT47B1P0C2W7 299 aaPredicted RBP27.24■■□□□ 1.95
VPS29-206ENST00000549578 EIF5P55010 431 aaKnown RBP27.24■■□□□ 1.95
VPS29-206ENST00000549578 COL15A1P39059 1388 aa27.23■■□□□ 1.95
VPS29-206ENST00000549578 LRP10Q7Z4F1 713 aa27.23■■□□□ 1.95
VPS29-206ENST00000549578 STK31Q9BXU1 1019 aa27.23■■□□□ 1.95
VPS29-206ENST00000549578 PNPLA7Q6ZV29 1317 aa27.22■■□□□ 1.95
VPS29-206ENST00000549578 SSFA2P28290 1259 aa27.22■■□□□ 1.95
VPS29-206ENST00000549578 R3HDM1Q15032 1099 aaKnown RBP27.21■■□□□ 1.95
VPS29-206ENST00000549578 ZNF428Q96B54 188 aa27.21■■□□□ 1.95
VPS29-206ENST00000549578 BCL2L13Q9BXK5 485 aa27.21■■□□□ 1.95
VPS29-206ENST00000549578 QSER1Q2KHR3 1735 aa27.2■■□□□ 1.95
VPS29-206ENST00000549578 SLC4A2P04920 1241 aa27.2■■□□□ 1.94
VPS29-206ENST00000549578 TRAPPC3LQ5T215 181 aa27.2■■□□□ 1.94
VPS29-206ENST00000549578 NPM2Q86SE8 214 aaKnown RBP27.2■■□□□ 1.94
VPS29-206ENST00000549578 SSH1Q8WYL5 1049 aa27.2■■□□□ 1.94
VPS29-206ENST00000549578 ARHGEF1Q92888 912 aaKnown RBP27.2■■□□□ 1.94
VPS29-206ENST00000549578 C4AP0C0L4 1744 aa27.19■■□□□ 1.94
VPS29-206ENST00000549578 COL23A1Q86Y22 540 aaPredicted RBP27.19■■□□□ 1.94
VPS29-206ENST00000549578 ARXQ96QS3 562 aa27.19■■□□□ 1.94
VPS29-206ENST00000549578 PHAXQ9H814 394 aaKnown RBP27.19■■□□□ 1.94
VPS29-206ENST00000549578 HYPKQ9NX55 129 aa27.19■■□□□ 1.94
VPS29-206ENST00000549578 PSDA5PKW4 1024 aaPredicted RBP27.18■■□□□ 1.94
VPS29-206ENST00000549578 ADRA2BP18089 450 aa27.18■■□□□ 1.94
VPS29-206ENST00000549578 RARSP54136 660 aaKnown RBP27.18■■□□□ 1.94
VPS29-206ENST00000549578 AIMP1Q12904 312 aaKnown RBP27.17■■□□□ 1.94
VPS29-206ENST00000549578 XAGE3Q8WTP9 111 aa27.17■■□□□ 1.94
VPS29-206ENST00000549578 PDGFDQ9GZP0 370 aaPredicted RBP27.17■■□□□ 1.94
VPS29-206ENST00000549578 TBC1D2BQ9UPU7 963 aa27.17■■□□□ 1.94
VPS29-206ENST00000549578 MSH5O43196 834 aa27.16■■□□□ 1.94
VPS29-206ENST00000549578 ALDH1L2Q3SY69 923 aa27.16■■□□□ 1.94
VPS29-206ENST00000549578 TTLL7Q6ZT98 887 aa27.16■■□□□ 1.94
VPS29-206ENST00000549578 COPS6Q7L5N1 327 aa27.16■■□□□ 1.94
VPS29-206ENST00000549578 G2E3Q7L622 706 aa27.16■■□□□ 1.94
VPS29-206ENST00000549578 FLAD1Q8NFF5 587 aa27.16■■□□□ 1.94
VPS29-206ENST00000549578 SMC4Q9NTJ3 1288 aa27.16■■□□□ 1.94
VPS29-206ENST00000549578 RFC4P35249 363 aa27.16■■□□□ 1.94
VPS29-206ENST00000549578 DZIP3Q86Y13 1208 aaKnown RBP27.16■■□□□ 1.94
VPS29-206ENST00000549578 MRPL50Q8N5N7 158 aaKnown RBP27.16■■□□□ 1.94
VPS29-206ENST00000549578 A0A087WZG4 1122 aa27.15■■□□□ 1.94
VPS29-206ENST00000549578 SRP68Q9UHB9 627 aaKnown RBP27.15■■□□□ 1.94
VPS29-206ENST00000549578 CACNA1FO60840 1977 aa27.14■■□□□ 1.94
VPS29-206ENST00000549578 NARFQ9UHQ1 456 aa27.12■■□□□ 1.93
VPS29-206ENST00000549578 USP42Q9H9J4 1324 aaKnown RBP27.12■■□□□ 1.93
VPS29-206ENST00000549578 BCAR3O75815 825 aa27.11■■□□□ 1.93
VPS29-206ENST00000549578 FLIIQ13045 1269 aa27.11■■□□□ 1.93
VPS29-206ENST00000549578 KIF6Q6ZMV9 814 aa27.11■■□□□ 1.93
VPS29-206ENST00000549578 ZPR1O75312 459 aa27.11■■□□□ 1.93
VPS29-206ENST00000549578 CAMTA2O94983 1202 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms