RNA–Protein interactions for RNA: ENST00000545153.5

PTPN6-223, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 3

Gene PTPN6, Length 959 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-223	ENST00000545153	SENP3-EIF4A1	A0A087X0R7	540 aa		18.8	■□□□□ 0.6
PTPN6-223	ENST00000545153	EIF4A1	P60842	406 aa	Known RBP	18.8	■□□□□ 0.6
PTPN6-223	ENST00000545153	FHDC1	Q9C0D6	1143 aa	Predicted RBP	18.8	■□□□□ 0.6
PTPN6-223	ENST00000545153	SRP68	Q9UHB9	627 aa	Known RBP	18.8	■□□□□ 0.6
PTPN6-223	ENST00000545153	LAS1L	Q9Y4W2	734 aa	Known RBP	18.8	■□□□□ 0.6
PTPN6-223	ENST00000545153	SOS1	Q07889	1333 aa	Predicted RBP	18.79	■□□□□ 0.6
PTPN6-223	ENST00000545153	NLGN1	Q8N2Q7	840 aa		18.79	■□□□□ 0.6
PTPN6-223	ENST00000545153	QSER1	Q2KHR3	1735 aa		18.78	■□□□□ 0.6
PTPN6-223	ENST00000545153	GYS1	P13807	737 aa		18.78	■□□□□ 0.6
PTPN6-223	ENST00000545153	FAM9B	Q8IZU0	186 aa		18.78	■□□□□ 0.6
PTPN6-223	ENST00000545153	KLHL34	Q8N239	644 aa		18.78	■□□□□ 0.6
PTPN6-223	ENST00000545153	SYT17	Q9BSW7	474 aa		18.78	■□□□□ 0.6
PTPN6-223	ENST00000545153	BABAM1	Q9NWV8	329 aa		18.78	■□□□□ 0.6
PTPN6-223	ENST00000545153	TUBGCP6	Q96RT7	1819 aa		18.78	■□□□□ 0.6
PTPN6-223	ENST00000545153	TJP1	Q07157	1748 aa		18.77	■□□□□ 0.6
PTPN6-223	ENST00000545153	ZPR1	O75312	459 aa		18.77	■□□□□ 0.6
PTPN6-223	ENST00000545153	GIGYF1	O75420	1035 aa	Predicted RBP	18.77	■□□□□ 0.6
PTPN6-223	ENST00000545153	EIF5	P55010	431 aa	Known RBP	18.77	■□□□□ 0.6
PTPN6-223	ENST00000545153	SIPA1L3	O60292	1781 aa	Predicted RBP	18.77	■□□□□ 0.6
PTPN6-223	ENST00000545153	CHL1	O00533	1208 aa		18.76	■□□□□ 0.59
PTPN6-223	ENST00000545153	PIP4K2A	P48426	406 aa	Predicted RBP	18.76	■□□□□ 0.59
PTPN6-223	ENST00000545153	USPL1	Q5W0Q7	1092 aa		18.76	■□□□□ 0.59
PTPN6-223	ENST00000545153	ZNF330	Q9Y3S2	320 aa	Predicted RBP	18.76	■□□□□ 0.59
PTPN6-223	ENST00000545153	COL5A3	P25940	1745 aa	Predicted RBP	18.75	■□□□□ 0.59
PTPN6-223	ENST00000545153	VIRMA	Q69YN4	1812 aa	Known RBP	18.75	■□□□□ 0.59
PTPN6-223	ENST00000545153	MMP10	P09238	476 aa		18.75	■□□□□ 0.59
PTPN6-223	ENST00000545153	IL6ST	P40189	918 aa	Predicted RBP	18.75	■□□□□ 0.59
PTPN6-223	ENST00000545153	FKBP8	Q14318	412 aa		18.75	■□□□□ 0.59
PTPN6-223	ENST00000545153	NARF	Q9UHQ1	456 aa		18.75	■□□□□ 0.59
PTPN6-223	ENST00000545153	UBR3	Q6ZT12	1888 aa		18.75	■□□□□ 0.59
PTPN6-223	ENST00000545153	USP42	Q9H9J4	1324 aa	Known RBP	18.74	■□□□□ 0.59
PTPN6-223	ENST00000545153		A0A087WZG4	1122 aa		18.74	■□□□□ 0.59
PTPN6-223	ENST00000545153	NPM2	Q86SE8	214 aa	Known RBP	18.74	■□□□□ 0.59
PTPN6-223	ENST00000545153	UBR2	Q8IWV8	1755 aa		18.73	■□□□□ 0.59
PTPN6-223	ENST00000545153	COL15A1	P39059	1388 aa		18.73	■□□□□ 0.59
PTPN6-223	ENST00000545153	TBC1D2B	Q9UPU7	963 aa		18.73	■□□□□ 0.59
PTPN6-223	ENST00000545153	MYH14	Q7Z406	1995 aa	Known RBP	18.73	■□□□□ 0.59
PTPN6-223	ENST00000545153	DLG5	Q8TDM6	1919 aa		18.72	■□□□□ 0.59
PTPN6-223	ENST00000545153	CIC	Q96RK0	1608 aa	Predicted RBP	18.72	■□□□□ 0.59
PTPN6-223	ENST00000545153	NBPF26	B4DH59	902 aa		18.72	■□□□□ 0.59
PTPN6-223	ENST00000545153	NBPF10	Q6P3W6	841 aa	Known RBP	18.72	■□□□□ 0.59
PTPN6-223	ENST00000545153	NBPF15	Q8N660	670 aa		18.72	■□□□□ 0.59
PTPN6-223	ENST00000545153	CFAP44	Q96MT7	982 aa		18.72	■□□□□ 0.59
PTPN6-223	ENST00000545153	SALL2	Q9Y467	1007 aa	Predicted RBP	18.72	■□□□□ 0.59
PTPN6-223	ENST00000545153	CALD1	Q05682	793 aa	Known RBP	18.71	■□□□□ 0.59
PTPN6-223	ENST00000545153	BCL2L12	Q9HB09	334 aa		18.71	■□□□□ 0.59
PTPN6-223	ENST00000545153	ZNF853	P0CG23	659 aa		18.7	■□□□□ 0.58
PTPN6-223	ENST00000545153	EIF2S2	P20042	333 aa	Known RBP	18.7	■□□□□ 0.58
PTPN6-223	ENST00000545153	TM4SF1	P30408	202 aa		18.7	■□□□□ 0.58
PTPN6-223	ENST00000545153	DIEXF	Q68CQ4	756 aa	Known RBP	18.7	■□□□□ 0.58
PTPN6-223	ENST00000545153	PARP3	Q9Y6F1	533 aa		18.7	■□□□□ 0.58
PTPN6-223	ENST00000545153	CCDC27	Q2M243	656 aa		18.69	■□□□□ 0.58
PTPN6-223	ENST00000545153	KRT24	Q2M2I5	525 aa		18.69	■□□□□ 0.58
PTPN6-223	ENST00000545153	NGEF	Q8N5V2	710 aa		18.69	■□□□□ 0.58
PTPN6-223	ENST00000545153	NLGN2	Q8NFZ4	835 aa		18.69	■□□□□ 0.58
PTPN6-223	ENST00000545153	IFT57	Q9NWB7	429 aa		18.69	■□□□□ 0.58
PTPN6-223	ENST00000545153	CD2AP	Q9Y5K6	639 aa		18.69	■□□□□ 0.58
PTPN6-223	ENST00000545153	GNAI1	P63096	354 aa		18.68	■□□□□ 0.58
PTPN6-223	ENST00000545153	DZIP3	Q86Y13	1208 aa	Known RBP	18.68	■□□□□ 0.58
PTPN6-223	ENST00000545153	WWC1	Q8IX03	1113 aa		18.68	■□□□□ 0.58
PTPN6-223	ENST00000545153	MBIP	Q9NS73	344 aa		18.68	■□□□□ 0.58
PTPN6-223	ENST00000545153	DCAF8L1	A6NGE4	600 aa		18.67	■□□□□ 0.58
PTPN6-223	ENST00000545153	MYL6B	P14649	208 aa		18.67	■□□□□ 0.58
PTPN6-223	ENST00000545153	DDR1	Q08345	913 aa		18.67	■□□□□ 0.58
PTPN6-223	ENST00000545153	NCBP3	Q53F19	620 aa	Known RBP	18.67	■□□□□ 0.58
PTPN6-223	ENST00000545153	CCER2	I3L3R5	266 aa		18.66	■□□□□ 0.58
PTPN6-223	ENST00000545153	CAMTA2	O94983	1202 aa		18.66	■□□□□ 0.58
PTPN6-223	ENST00000545153	NFIX	Q14938	502 aa		18.66	■□□□□ 0.58
PTPN6-223	ENST00000545153	BICDL1	Q6ZP65	573 aa		18.66	■□□□□ 0.58
PTPN6-223	ENST00000545153	NECTIN2	Q92692	538 aa		18.66	■□□□□ 0.58
PTPN6-223	ENST00000545153	COL24A1	Q17RW2	1714 aa		18.66	■□□□□ 0.58
PTPN6-223	ENST00000545153	POLRMT	O00411	1230 aa	Known RBP	18.65	■□□□□ 0.58
PTPN6-223	ENST00000545153	KDM3B	Q7LBC6	1761 aa		18.64	■□□□□ 0.57
PTPN6-223	ENST00000545153	TBC1D9B	Q66K14	1250 aa		18.64	■□□□□ 0.57
PTPN6-223	ENST00000545153	ELL2	O00472	640 aa	Predicted RBP	18.63	■□□□□ 0.57
PTPN6-223	ENST00000545153	PDIA6	Q15084	440 aa		18.63	■□□□□ 0.57
PTPN6-223	ENST00000545153	DUSP27	Q5VZP5	1158 aa		18.63	■□□□□ 0.57
PTPN6-223	ENST00000545153	MIER1	Q8N108	512 aa		18.63	■□□□□ 0.57
PTPN6-223	ENST00000545153	ANXA1	P04083	346 aa		18.62	■□□□□ 0.57
PTPN6-223	ENST00000545153	SERPINB2	P05120	415 aa		18.62	■□□□□ 0.57
PTPN6-223	ENST00000545153	TTLL7	Q6ZT98	887 aa		18.62	■□□□□ 0.57
PTPN6-223	ENST00000545153	PELP1	Q8IZL8	1130 aa	Known RBP	18.62	■□□□□ 0.57
PTPN6-223	ENST00000545153	ERBB4	Q15303	1308 aa		18.62	■□□□□ 0.57
PTPN6-223	ENST00000545153	GPR162	Q16538	588 aa		18.61	■□□□□ 0.57
PTPN6-223	ENST00000545153	PROSER3	Q2NL68	480 aa		18.61	■□□□□ 0.57
PTPN6-223	ENST00000545153	WDR63	Q8IWG1	891 aa		18.61	■□□□□ 0.57
PTPN6-223	ENST00000545153	C8orf58	Q8NAV2	365 aa		18.61	■□□□□ 0.57
PTPN6-223	ENST00000545153	TSR2	Q969E8	191 aa	Known RBP	18.61	■□□□□ 0.57
PTPN6-223	ENST00000545153	SETDB2	Q96T68	719 aa		18.61	■□□□□ 0.57
PTPN6-223	ENST00000545153	HOXB7	P09629	217 aa		18.6	■□□□□ 0.57
PTPN6-223	ENST00000545153	HLF	Q16534	295 aa		18.6	■□□□□ 0.57
PTPN6-223	ENST00000545153	HDGFL1	Q5TGJ6	251 aa		18.6	■□□□□ 0.57
PTPN6-223	ENST00000545153	CLEC4G	Q6UXB4	293 aa		18.6	■□□□□ 0.57
PTPN6-223	ENST00000545153	C4A	P0C0L4	1744 aa		18.6	■□□□□ 0.57
PTPN6-223	ENST00000545153	IL16	Q14005	1332 aa		18.59	■□□□□ 0.57
PTPN6-223	ENST00000545153		A0A0G2JLW4	131 aa		18.59	■□□□□ 0.57
PTPN6-223	ENST00000545153	TGFB2	P61812	414 aa		18.59	■□□□□ 0.57
PTPN6-223	ENST00000545153	KIF6	Q6ZMV9	814 aa		18.59	■□□□□ 0.57
PTPN6-223	ENST00000545153	WWC3	Q9ULE0	1092 aa		18.59	■□□□□ 0.57
PTPN6-223	ENST00000545153	ZNF652	Q9Y2D9	606 aa		18.59	■□□□□ 0.57

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms