RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 TTLL12Q14166 644 aaPredicted RBP6.06□□□□□ -1.44
SNHG1-220ENST00000544550 GIGYF2Q6Y7W6 1299 aaKnown RBP6.06□□□□□ -1.44
SNHG1-220ENST00000544550 THSD4Q6ZMP0 1018 aa6.06□□□□□ -1.44
SNHG1-220ENST00000544550 DDRGK1Q96HY6 314 aa6.06□□□□□ -1.44
SNHG1-220ENST00000544550 ADGRG1Q9Y653 693 aa6.06□□□□□ -1.44
SNHG1-220ENST00000544550 COL5A2P05997 1499 aaPredicted RBP6.06□□□□□ -1.44
SNHG1-220ENST00000544550 ATP10DQ9P241 1426 aa6.06□□□□□ -1.44
SNHG1-220ENST00000544550 SHANK3Q9BYB0 1731 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 PRR36Q9H6K5 1346 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 PLEKHG3A1L390 1219 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 COL9A1P20849 921 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 APLP1P51693 650 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 FAM161AQ3B820 660 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 CFAP70Q5T0N1 1121 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 TRAF7Q6Q0C0 670 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 ERICH6Q7L0X2 663 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 METTL3Q86U44 580 aaKnown RBP6.05□□□□□ -1.44
SNHG1-220ENST00000544550 PXYLP1Q8TE99 480 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 CDCA7LQ96GN5 454 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 HIRIP3Q9BW71 556 aaPredicted RBP6.05□□□□□ -1.44
SNHG1-220ENST00000544550 SLC4A5Q9BY07 1137 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 TIMELESSQ9UNS1 1208 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 PHRF1Q9P1Y6 1649 aaKnown RBP6.05□□□□□ -1.44
SNHG1-220ENST00000544550 PEAK1Q9H792 1746 aa6.05□□□□□ -1.44
SNHG1-220ENST00000544550 USP19O94966 1318 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 RGPD8O14715 1765 aaPredicted RBP6.04□□□□□ -1.44
SNHG1-220ENST00000544550 PPP1R3GB7ZBB8 358 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 GCP02774 474 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 MS4A1P11836 297 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 PTPREP23469 700 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 CLCN1P35523 988 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 MDM2Q00987 491 aaPredicted RBP6.04□□□□□ -1.44
SNHG1-220ENST00000544550 NUTM2GQ5VZR2 741 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 TOM1L2Q6ZVM7 507 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 NLRP13Q86W25 1043 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 ABTB2Q8N961 1025 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 GPCPD1Q9NPB8 672 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 FAM198AQ9UFP1 575 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 POLR3AO14802 1390 aaPredicted RBP6.04□□□□□ -1.44
SNHG1-220ENST00000544550 LMO7Q8WWI1 1683 aa6.04□□□□□ -1.44
SNHG1-220ENST00000544550 LRRC37A3O60309 1634 aa6.03□□□□□ -1.44
SNHG1-220ENST00000544550 EXOC5O00471 708 aa6.03□□□□□ -1.44
SNHG1-220ENST00000544550 PRELPP51888 382 aa6.03□□□□□ -1.44
SNHG1-220ENST00000544550 MARCH10Q8NA82 808 aaPredicted RBP6.03□□□□□ -1.44
SNHG1-220ENST00000544550 NUDT16Q96DE0 195 aaKnown RBP6.03□□□□□ -1.44
SNHG1-220ENST00000544550 TRAK1Q9UPV9 953 aa6.03□□□□□ -1.44
SNHG1-220ENST00000544550 VPS9D1Q9Y2B5 631 aa6.03□□□□□ -1.44
SNHG1-220ENST00000544550 BRD4O60885 1362 aaPredicted RBP6.03□□□□□ -1.44
SNHG1-220ENST00000544550 UTRNP46939 3433 aa6.03□□□□□ -1.44
SNHG1-220ENST00000544550 ITGBL1O95965 494 aaPredicted RBP6.02□□□□□ -1.45
SNHG1-220ENST00000544550 PTF1AQ7RTS3 328 aa6.02□□□□□ -1.45
SNHG1-220ENST00000544550 TSKSQ9UJT2 592 aa6.02□□□□□ -1.45
SNHG1-220ENST00000544550 ACEP12821 1306 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 WDR17Q8IZU2 1322 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 YBX3P16989 372 aaKnown RBP eCLIP6.01□□□□□ -1.45
SNHG1-220ENST00000544550 SSTR3P32745 418 aaPredicted RBP6.01□□□□□ -1.45
SNHG1-220ENST00000544550 SLC27A3Q5K4L6 730 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 NLGN2Q8NFZ4 835 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 RBM46Q8TBY0 533 aaKnown RBP6.01□□□□□ -1.45
SNHG1-220ENST00000544550 WNT2BQ93097 391 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 KCNK17Q96T54 332 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 EYA1Q99502 592 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 GOPCQ9HD26 462 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 FAM217BQ9NTX9 383 aaPredicted RBP6.01□□□□□ -1.45
SNHG1-220ENST00000544550 ADCY9O60503 1353 aa6.01□□□□□ -1.45
SNHG1-220ENST00000544550 ITSN1Q15811 1721 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 TRIM6-TRIM34B2RNG4 842 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 CSB-PGBD3P0DP91 1061 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 HMGB2P26583 209 aaKnown RBP6□□□□□ -1.45
SNHG1-220ENST00000544550 ZNF827Q17R98 1081 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 NYAP1Q6ZVC0 841 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 TNS4Q8IZW8 715 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 MRPL50Q8N5N7 158 aaKnown RBP6□□□□□ -1.45
SNHG1-220ENST00000544550 ZNF526Q8TF50 670 aaPredicted RBP6□□□□□ -1.45
SNHG1-220ENST00000544550 NLRP7Q8WX94 980 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 CARD10Q9BWT7 1032 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 CCDC7Q96M83 1385 aa6□□□□□ -1.45
SNHG1-220ENST00000544550 TNS2Q63HR2 1409 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 PAPPAQ13219 1627 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 TOPAZ1Q8N9V7 1692 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 ADGRB1O14514 1584 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.99□□□□□ -1.45
SNHG1-220ENST00000544550 ZBTB7CA1YPR0 619 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 C3orf80F5H4A9 247 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 TOMM70O94826 608 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 COL13A1Q5TAT6 717 aaPredicted RBP5.99□□□□□ -1.45
SNHG1-220ENST00000544550 DNAJC5GQ8N7S2 189 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 NBPF3Q9H094 633 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 TFCP2L1Q9NZI6 479 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 CD2APQ9Y5K6 639 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 USP6P35125 1406 aa5.99□□□□□ -1.45
SNHG1-220ENST00000544550 SBF2Q86WG5 1849 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 RCCD1A6NED2 376 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 NUDT18Q6ZVK8 323 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 PACS2Q86VP3 889 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 JMYQ8N9B5 988 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 KCNH5Q8NCM2 988 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 TATDN2Q93075 761 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 ACSBG1Q96GR2 724 aa5.98□□□□□ -1.45
SNHG1-220ENST00000544550 MPHOSPH9Q99550 1183 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms