RNA–Protein interactions for RNA: ENST00000543928.5

SP140-213, Transcript of SP140 nuclear body protein, humanhuman

TSL 2

Gene SP140, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-213ENST00000543928 FANCIQ9NVI1 1328 aa17.69■□□□□ 0.42
SP140-213ENST00000543928 STARD3NLO95772 234 aa17.68■□□□□ 0.42
SP140-213ENST00000543928 CRKLP46109 303 aaKnown RBP17.68■□□□□ 0.42
SP140-213ENST00000543928 MYH16Q9H6N6 1097 aa17.68■□□□□ 0.42
SP140-213ENST00000543928 USP16Q9Y5T5 823 aa17.68■□□□□ 0.42
SP140-213ENST00000543928 RC3H1Q5TC82 1133 aaKnown RBP17.67■□□□□ 0.42
SP140-213ENST00000543928 TFCP2L1Q9NZI6 479 aa17.67■□□□□ 0.42
SP140-213ENST00000543928 MYH14Q7Z406 1995 aaKnown RBP17.67■□□□□ 0.42
SP140-213ENST00000543928 E9PSI1 815 aa17.66■□□□□ 0.42
SP140-213ENST00000543928 GNPATO15228 680 aa17.66■□□□□ 0.42
SP140-213ENST00000543928 R3HDM1Q15032 1099 aaKnown RBP17.66■□□□□ 0.42
SP140-213ENST00000543928 INTS5Q6P9B9 1019 aaKnown RBP17.66■□□□□ 0.42
SP140-213ENST00000543928 CNKSR2Q8WXI2 1034 aa17.66■□□□□ 0.42
SP140-213ENST00000543928 CDCA7LQ96GN5 454 aa17.66■□□□□ 0.42
SP140-213ENST00000543928 CCDC87Q9NVE4 849 aa17.66■□□□□ 0.42
SP140-213ENST00000543928 ZBED9Q6R2W3 1325 aa17.66■□□□□ 0.42
SP140-213ENST00000543928 SLFN5Q08AF3 891 aa17.65■□□□□ 0.42
SP140-213ENST00000543928 DUSP27Q5VZP5 1158 aa17.65■□□□□ 0.42
SP140-213ENST00000543928 C8orf58Q8NAV2 365 aa17.65■□□□□ 0.42
SP140-213ENST00000543928 LAMB4A4D0S4 1761 aa17.65■□□□□ 0.42
SP140-213ENST00000543928 PSDA5PKW4 1024 aaPredicted RBP17.64■□□□□ 0.41
SP140-213ENST00000543928 ELL2O00472 640 aaPredicted RBP17.64■□□□□ 0.41
SP140-213ENST00000543928 A1BGP04217 495 aa17.64■□□□□ 0.41
SP140-213ENST00000543928 AMIGO3Q86WK7 504 aa17.64■□□□□ 0.41
SP140-213ENST00000543928 ZBTB1Q9Y2K1 713 aa17.64■□□□□ 0.41
SP140-213ENST00000543928 TUBGCP6Q96RT7 1819 aa17.63■□□□□ 0.41
SP140-213ENST00000543928 UBR3Q6ZT12 1888 aa17.63■□□□□ 0.41
SP140-213ENST00000543928 RPS6KA4O75676 772 aa17.63■□□□□ 0.41
SP140-213ENST00000543928 HOXB7P09629 217 aa17.63■□□□□ 0.41
SP140-213ENST00000543928 EIF2S2P20042 333 aaKnown RBP17.63■□□□□ 0.41
SP140-213ENST00000543928 CANXP27824 592 aaKnown RBP17.63■□□□□ 0.41
SP140-213ENST00000543928 SMIM5Q71RC9 77 aa17.63■□□□□ 0.41
SP140-213ENST00000543928 TSPYL6Q8N831 410 aa17.63■□□□□ 0.41
SP140-213ENST00000543928 RTCBQ9Y3I0 505 aaKnown RBP17.63■□□□□ 0.41
SP140-213ENST00000543928 PNPLA7Q6ZV29 1317 aa17.63■□□□□ 0.41
SP140-213ENST00000543928 PHF14O94880 888 aa17.62■□□□□ 0.41
SP140-213ENST00000543928 PIP4K2AP48426 406 aaPredicted RBP17.62■□□□□ 0.41
SP140-213ENST00000543928 EXOSC9Q06265 439 aaKnown RBP17.62■□□□□ 0.41
SP140-213ENST00000543928 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.61■□□□□ 0.41
SP140-213ENST00000543928 SSFA2P28290 1259 aa17.61■□□□□ 0.41
SP140-213ENST00000543928 MAPK8IP2Q13387 824 aaPredicted RBP17.61■□□□□ 0.41
SP140-213ENST00000543928 HDGFL1Q5TGJ6 251 aa17.61■□□□□ 0.41
SP140-213ENST00000543928 NECTIN2Q92692 538 aa17.61■□□□□ 0.41
SP140-213ENST00000543928 QSER1Q2KHR3 1735 aa17.61■□□□□ 0.41
SP140-213ENST00000543928 NBPF26B4DH59 902 aa17.6■□□□□ 0.41
SP140-213ENST00000543928 TWISTNBQ3B726 338 aaPredicted RBP17.6■□□□□ 0.41
SP140-213ENST00000543928 NBPF10Q6P3W6 841 aaKnown RBP17.6■□□□□ 0.41
SP140-213ENST00000543928 TRMT2AQ8IZ69 625 aaKnown RBP17.6■□□□□ 0.41
SP140-213ENST00000543928 NBPF15Q8N660 670 aa17.6■□□□□ 0.41
SP140-213ENST00000543928 FLAD1Q8NFF5 587 aa17.6■□□□□ 0.41
SP140-213ENST00000543928 YTHDC1Q96MU7 727 aaKnown RBP17.6■□□□□ 0.41
SP140-213ENST00000543928 SOS1Q07889 1333 aaPredicted RBP17.6■□□□□ 0.41
SP140-213ENST00000543928 IL6STP40189 918 aaPredicted RBP17.59■□□□□ 0.41
SP140-213ENST00000543928 TRAPPC3LQ5T215 181 aa17.59■□□□□ 0.41
SP140-213ENST00000543928 COL23A1Q86Y22 540 aaPredicted RBP17.59■□□□□ 0.41
SP140-213ENST00000543928 PDGFDQ9GZP0 370 aaPredicted RBP17.59■□□□□ 0.41
SP140-213ENST00000543928 ZNF330Q9Y3S2 320 aaPredicted RBP17.59■□□□□ 0.41
SP140-213ENST00000543928 COL15A1P39059 1388 aa17.58■□□□□ 0.4
SP140-213ENST00000543928 ERBB4Q15303 1308 aa17.58■□□□□ 0.4
SP140-213ENST00000543928 EIF5P55010 431 aaKnown RBP17.58■□□□□ 0.4
SP140-213ENST00000543928 VAMP4O75379 141 aa17.57■□□□□ 0.4
SP140-213ENST00000543928 MYL6BP14649 208 aa17.57■□□□□ 0.4
SP140-213ENST00000543928 PDIA6Q15084 440 aa17.57■□□□□ 0.4
SP140-213ENST00000543928 NPM2Q86SE8 214 aaKnown RBP17.57■□□□□ 0.4
SP140-213ENST00000543928 ARHGEF1Q92888 912 aaKnown RBP17.57■□□□□ 0.4
SP140-213ENST00000543928 ANXA1P04083 346 aa17.56■□□□□ 0.4
SP140-213ENST00000543928 RFC4P35249 363 aa17.56■□□□□ 0.4
SP140-213ENST00000543928 PROSER3Q2NL68 480 aa17.56■□□□□ 0.4
SP140-213ENST00000543928 CHPF2Q9P2E5 772 aa17.56■□□□□ 0.4
SP140-213ENST00000543928 CASZ1Q86V15 1759 aa17.56■□□□□ 0.4
SP140-213ENST00000543928 A0A087WZG4 1122 aa17.55■□□□□ 0.4
SP140-213ENST00000543928 CCDC30Q5VVM6 783 aa17.55■□□□□ 0.4
SP140-213ENST00000543928 CHMP4AQ9BY43 222 aa17.55■□□□□ 0.4
SP140-213ENST00000543928 DDX21Q9NR30 783 aaKnown RBP eCLIP17.55■□□□□ 0.4
SP140-213ENST00000543928 DBF4Q9UBU7 674 aaPredicted RBP17.55■□□□□ 0.4
SP140-213ENST00000543928 C4AP0C0L4 1744 aa17.55■□□□□ 0.4
SP140-213ENST00000543928 TCERG1O14776 1098 aaKnown RBP17.54■□□□□ 0.4
SP140-213ENST00000543928 ARXQ96QS3 562 aa17.54■□□□□ 0.4
SP140-213ENST00000543928 LRP10Q7Z4F1 713 aa17.53■□□□□ 0.4
SP140-213ENST00000543928 SRP68Q9UHB9 627 aaKnown RBP17.53■□□□□ 0.4
SP140-213ENST00000543928 NARFQ9UHQ1 456 aa17.53■□□□□ 0.4
SP140-213ENST00000543928 TBC1D2BQ9UPU7 963 aa17.53■□□□□ 0.4
SP140-213ENST00000543928 USP42Q9H9J4 1324 aaKnown RBP17.52■□□□□ 0.4
SP140-213ENST00000543928 ZPR1O75312 459 aa17.52■□□□□ 0.4
SP140-213ENST00000543928 ZBTB7AO95365 584 aa17.52■□□□□ 0.4
SP140-213ENST00000543928 DZIP3Q86Y13 1208 aaKnown RBP17.52■□□□□ 0.4
SP140-213ENST00000543928 SLC16A10Q8TF71 515 aa17.52■□□□□ 0.4
SP140-213ENST00000543928 STK31Q9BXU1 1019 aa17.52■□□□□ 0.4
SP140-213ENST00000543928 USPL1Q5W0Q7 1092 aa17.51■□□□□ 0.39
SP140-213ENST00000543928 HYPKQ9NX55 129 aa17.51■□□□□ 0.39
SP140-213ENST00000543928 CT47B1P0C2W7 299 aaPredicted RBP17.5■□□□□ 0.39
SP140-213ENST00000543928 AIMP1Q12904 312 aaKnown RBP17.5■□□□□ 0.39
SP140-213ENST00000543928 MSL1Q68DK7 614 aa17.5■□□□□ 0.39
SP140-213ENST00000543928 TTLL7Q6ZT98 887 aa17.5■□□□□ 0.39
SP140-213ENST00000543928 COPS6Q7L5N1 327 aa17.5■□□□□ 0.39
SP140-213ENST00000543928 XAGE3Q8WTP9 111 aa17.5■□□□□ 0.39
SP140-213ENST00000543928 MTFR1LQ9H019 292 aa17.5■□□□□ 0.39
SP140-213ENST00000543928 CAMTA2O94983 1202 aa17.49■□□□□ 0.39
SP140-213ENST00000543928 SLC4A2P04920 1241 aa17.49■□□□□ 0.39
SP140-213ENST00000543928 GYS1P13807 737 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms