RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 ZNF827Q17R98 1081 aa8.17□□□□□ -1.1
LTBR-212ENST00000543542 NECTIN2Q92692 538 aa8.17□□□□□ -1.1
LTBR-212ENST00000543542 ANO8Q9HCE9 1232 aaPredicted RBP8.17□□□□□ -1.1
LTBR-212ENST00000543542 CCDC87Q9NVE4 849 aa8.17□□□□□ -1.1
LTBR-212ENST00000543542 RTCBQ9Y3I0 505 aaKnown RBP8.17□□□□□ -1.1
LTBR-212ENST00000543542 E9PSI1 815 aa8.16□□□□□ -1.1
LTBR-212ENST00000543542 GIGYF1O75420 1035 aaPredicted RBP8.16□□□□□ -1.1
LTBR-212ENST00000543542 ZNF853P0CG23 659 aa8.16□□□□□ -1.1
LTBR-212ENST00000543542 CYP19A1P11511 503 aaPredicted RBP8.16□□□□□ -1.1
LTBR-212ENST00000543542 TRAPPC3LQ5T215 181 aa8.16□□□□□ -1.1
LTBR-212ENST00000543542 RC3H1Q5TC82 1133 aaKnown RBP8.16□□□□□ -1.1
LTBR-212ENST00000543542 FLAD1Q8NFF5 587 aa8.16□□□□□ -1.1
LTBR-212ENST00000543542 AKT1S1Q96B36 256 aa8.16□□□□□ -1.1
LTBR-212ENST00000543542 TUBGCP6Q96RT7 1819 aa8.16□□□□□ -1.1
LTBR-212ENST00000543542 CNTNAP4Q9C0A0 1308 aa8.16□□□□□ -1.1
LTBR-212ENST00000543542 USP16Q9Y5T5 823 aa8.16□□□□□ -1.1
LTBR-212ENST00000543542 CICQ96RK0 1608 aaPredicted RBP8.15□□□□□ -1.1
LTBR-212ENST00000543542 FANCIQ9NVI1 1328 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 A1BGP04217 495 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 MYL6BP14649 208 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 RFC4P35249 363 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 PIP4K2AP48426 406 aaPredicted RBP8.15□□□□□ -1.1
LTBR-212ENST00000543542 KRT24Q2M2I5 525 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 HDGFL1Q5TGJ6 251 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 DUSP27Q5VZP5 1158 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 CHMP4AQ9BY43 222 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 ZBTB1Q9Y2K1 713 aa8.15□□□□□ -1.1
LTBR-212ENST00000543542 UBR3Q6ZT12 1888 aa8.15□□□□□ -1.11
LTBR-212ENST00000543542 QSER1Q2KHR3 1735 aa8.15□□□□□ -1.11
LTBR-212ENST00000543542 A0A087WZG4 1122 aa8.14□□□□□ -1.11
LTBR-212ENST00000543542 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.14□□□□□ -1.11
LTBR-212ENST00000543542 ZPR1O75312 459 aa8.14□□□□□ -1.11
LTBR-212ENST00000543542 RPS6KA4O75676 772 aa8.14□□□□□ -1.11
LTBR-212ENST00000543542 SSFA2P28290 1259 aa8.14□□□□□ -1.11
LTBR-212ENST00000543542 EXOSC9Q06265 439 aaKnown RBP8.14□□□□□ -1.11
LTBR-212ENST00000543542 TWISTNBQ3B726 338 aaPredicted RBP8.14□□□□□ -1.11
LTBR-212ENST00000543542 INTS5Q6P9B9 1019 aaKnown RBP8.14□□□□□ -1.11
LTBR-212ENST00000543542 SMIM5Q71RC9 77 aa8.14□□□□□ -1.11
LTBR-212ENST00000543542 C8orf58Q8NAV2 365 aa8.14□□□□□ -1.11
LTBR-212ENST00000543542 MYH14Q7Z406 1995 aaKnown RBP8.13□□□□□ -1.11
LTBR-212ENST00000543542 COL15A1P39059 1388 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 ZBED9Q6R2W3 1325 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 PNPLA7Q6ZV29 1317 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 ZNF521Q96K83 1311 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 ZBTB7AO95365 584 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 HOXB7P09629 217 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 ADRA2BP18089 450 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 IL6STP40189 918 aaPredicted RBP8.13□□□□□ -1.11
LTBR-212ENST00000543542 SLFN5Q08AF3 891 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 CCDC30Q5VVM6 783 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 COL23A1Q86Y22 540 aaPredicted RBP8.13□□□□□ -1.11
LTBR-212ENST00000543542 ARHGEF1Q92888 912 aaKnown RBP8.13□□□□□ -1.11
LTBR-212ENST00000543542 CDCA7LQ96GN5 454 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 STK31Q9BXU1 1019 aa8.13□□□□□ -1.11
LTBR-212ENST00000543542 SPINK5Q9NQ38 1064 aaPredicted RBP8.13□□□□□ -1.11
LTBR-212ENST00000543542 SOS1Q07889 1333 aaPredicted RBP8.12□□□□□ -1.11
LTBR-212ENST00000543542 TCERG1O14776 1098 aaKnown RBP8.12□□□□□ -1.11
LTBR-212ENST00000543542 AIMP1Q12904 312 aaKnown RBP8.12□□□□□ -1.11
LTBR-212ENST00000543542 MSL1Q68DK7 614 aa8.12□□□□□ -1.11
LTBR-212ENST00000543542 KIF6Q6ZMV9 814 aa8.12□□□□□ -1.11
LTBR-212ENST00000543542 TSPYL6Q8N831 410 aa8.12□□□□□ -1.11
LTBR-212ENST00000543542 DBF4Q9UBU7 674 aaPredicted RBP8.12□□□□□ -1.11
LTBR-212ENST00000543542 TBC1D2BQ9UPU7 963 aa8.12□□□□□ -1.11
LTBR-212ENST00000543542 ATF5Q9Y2D1 282 aaPredicted RBP8.12□□□□□ -1.11
LTBR-212ENST00000543542 C4AP0C0L4 1744 aa8.12□□□□□ -1.11
LTBR-212ENST00000543542 ERBB4Q15303 1308 aa8.11□□□□□ -1.11
LTBR-212ENST00000543542 ANXA1P04083 346 aa8.11□□□□□ -1.11
LTBR-212ENST00000543542 POLD1P28340 1107 aa8.11□□□□□ -1.11
LTBR-212ENST00000543542 USPL1Q5W0Q7 1092 aa8.11□□□□□ -1.11
LTBR-212ENST00000543542 DZIP3Q86Y13 1208 aaKnown RBP8.11□□□□□ -1.11
LTBR-212ENST00000543542 SLC16A10Q8TF71 515 aa8.11□□□□□ -1.11
LTBR-212ENST00000543542 PDGFDQ9GZP0 370 aaPredicted RBP8.11□□□□□ -1.11
LTBR-212ENST00000543542 DDX21Q9NR30 783 aaKnown RBP eCLIP8.11□□□□□ -1.11
LTBR-212ENST00000543542 CHPF2Q9P2E5 772 aa8.11□□□□□ -1.11
LTBR-212ENST00000543542 PPP1R1BQ9UD71 204 aaPredicted RBP8.11□□□□□ -1.11
LTBR-212ENST00000543542 CASZ1Q86V15 1759 aa8.11□□□□□ -1.11
LTBR-212ENST00000543542 NBPF26B4DH59 902 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 NPHP1O15259 732 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 EIF5P55010 431 aaKnown RBP8.1□□□□□ -1.11
LTBR-212ENST00000543542 NBPF10Q6P3W6 841 aaKnown RBP8.1□□□□□ -1.11
LTBR-212ENST00000543542 AMIGO3Q86WK7 504 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 NBPF15Q8N660 670 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 MTFR1LQ9H019 292 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 SPON1Q9HCB6 807 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 HYPKQ9NX55 129 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 SRP68Q9UHB9 627 aaKnown RBP8.1□□□□□ -1.11
LTBR-212ENST00000543542 NARFQ9UHQ1 456 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 ZNF652Q9Y2D9 606 aa8.1□□□□□ -1.11
LTBR-212ENST00000543542 USP42Q9H9J4 1324 aaKnown RBP8.09□□□□□ -1.11
LTBR-212ENST00000543542 VAMP4O75379 141 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 DDX58O95786 925 aaKnown RBP8.09□□□□□ -1.11
LTBR-212ENST00000543542 SLC4A2P04920 1241 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 PROSER3Q2NL68 480 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 BICDL1Q6ZP65 573 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 COPS6Q7L5N1 327 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 KLHL34Q8N239 644 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 NLGN1Q8N2Q7 840 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 XAGE3Q8WTP9 111 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 ZBTB3Q9H5J0 574 aa8.09□□□□□ -1.11
LTBR-212ENST00000543542 GYS1P13807 737 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms