RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 HOXB7P09629 217 aa24.4■■□□□ 1.5
VPS33A-205ENST00000541169 UBR3Q6ZT12 1888 aa24.39■■□□□ 1.5
VPS33A-205ENST00000541169 PSDA5PKW4 1024 aaPredicted RBP24.38■■□□□ 1.49
VPS33A-205ENST00000541169 LAMB4A4D0S4 1761 aa24.37■■□□□ 1.49
VPS33A-205ENST00000541169 TRAPPC3LQ5T215 181 aa24.37■■□□□ 1.49
VPS33A-205ENST00000541169 NPM2Q86SE8 214 aaKnown RBP24.37■■□□□ 1.49
VPS33A-205ENST00000541169 MBIPQ9NS73 344 aa24.37■■□□□ 1.49
VPS33A-205ENST00000541169 ERBB4Q15303 1308 aa24.36■■□□□ 1.49
VPS33A-205ENST00000541169 PNPLA7Q6ZV29 1317 aa24.36■■□□□ 1.49
VPS33A-205ENST00000541169 INTS5Q6P9B9 1019 aaKnown RBP24.36■■□□□ 1.49
VPS33A-205ENST00000541169 MYH16Q9H6N6 1097 aa24.36■■□□□ 1.49
VPS33A-205ENST00000541169 CASZ1Q86V15 1759 aa24.35■■□□□ 1.49
VPS33A-205ENST00000541169 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.35■■□□□ 1.49
VPS33A-205ENST00000541169 TUBGCP6Q96RT7 1819 aa24.35■■□□□ 1.49
VPS33A-205ENST00000541169 ZNF521Q96K83 1311 aa24.35■■□□□ 1.49
VPS33A-205ENST00000541169 MYH14Q7Z406 1995 aaKnown RBP24.34■■□□□ 1.49
VPS33A-205ENST00000541169 A0A087WZG4 1122 aa24.34■■□□□ 1.49
VPS33A-205ENST00000541169 IL6STP40189 918 aaPredicted RBP24.34■■□□□ 1.49
VPS33A-205ENST00000541169 SALL2Q9Y467 1007 aaPredicted RBP24.34■■□□□ 1.49
VPS33A-205ENST00000541169 MTFR1LQ9H019 292 aa24.33■■□□□ 1.49
VPS33A-205ENST00000541169 USP16Q9Y5T5 823 aa24.33■■□□□ 1.49
VPS33A-205ENST00000541169 GOLGA2Q08379 1002 aa24.32■■□□□ 1.48
VPS33A-205ENST00000541169 COL23A1Q86Y22 540 aaPredicted RBP24.32■■□□□ 1.48
VPS33A-205ENST00000541169 MSH5O43196 834 aa24.31■■□□□ 1.48
VPS33A-205ENST00000541169 RFC4P35249 363 aa24.31■■□□□ 1.48
VPS33A-205ENST00000541169 PHF14O94880 888 aa24.3■■□□□ 1.48
VPS33A-205ENST00000541169 SPON1Q9HCB6 807 aa24.3■■□□□ 1.48
VPS33A-205ENST00000541169 ZBTB1Q9Y2K1 713 aa24.3■■□□□ 1.48
VPS33A-205ENST00000541169 E9PSI1 815 aa24.29■■□□□ 1.48
VPS33A-205ENST00000541169 EIF5P55010 431 aaKnown RBP24.29■■□□□ 1.48
VPS33A-205ENST00000541169 COL15A1P39059 1388 aa24.29■■□□□ 1.48
VPS33A-205ENST00000541169 RGL2O15211 777 aa24.28■■□□□ 1.48
VPS33A-205ENST00000541169 CANXP27824 592 aaKnown RBP24.28■■□□□ 1.48
VPS33A-205ENST00000541169 DUSP27Q5VZP5 1158 aa24.28■■□□□ 1.48
VPS33A-205ENST00000541169 ARHGEF1Q92888 912 aaKnown RBP24.28■■□□□ 1.48
VPS33A-205ENST00000541169 ZPR1O75312 459 aa24.27■■□□□ 1.48
VPS33A-205ENST00000541169 A1BGP04217 495 aa24.27■■□□□ 1.48
VPS33A-205ENST00000541169 SENP3-EIF4A1A0A087X0R7 540 aa24.26■■□□□ 1.47
VPS33A-205ENST00000541169 PRAMEF22A3QJZ6 481 aa24.26■■□□□ 1.47
VPS33A-205ENST00000541169 NLGN1Q8N2Q7 840 aa24.26■■□□□ 1.47
VPS33A-205ENST00000541169 FANCIQ9NVI1 1328 aa24.26■■□□□ 1.47
VPS33A-205ENST00000541169 NARFQ9UHQ1 456 aa24.25■■□□□ 1.47
VPS33A-205ENST00000541169 HNRNPUQ00839 825 aaKnown RBP eCLIP24.24■■□□□ 1.47
VPS33A-205ENST00000541169 HDGFL1Q5TGJ6 251 aa24.24■■□□□ 1.47
VPS33A-205ENST00000541169 TSR2Q969E8 191 aaKnown RBP24.24■■□□□ 1.47
VPS33A-205ENST00000541169 DBF4Q9UBU7 674 aaPredicted RBP24.24■■□□□ 1.47
VPS33A-205ENST00000541169 USP42Q9H9J4 1324 aaKnown RBP24.24■■□□□ 1.47
VPS33A-205ENST00000541169 LRP5O75197 1615 aa24.24■■□□□ 1.47
VPS33A-205ENST00000541169 COL24A1Q17RW2 1714 aa24.24■■□□□ 1.47
VPS33A-205ENST00000541169 EIF2S2P20042 333 aaKnown RBP24.23■■□□□ 1.47
VPS33A-205ENST00000541169 POLD1P28340 1107 aa24.23■■□□□ 1.47
VPS33A-205ENST00000541169 AMIGO3Q86WK7 504 aa24.23■■□□□ 1.47
VPS33A-205ENST00000541169 PDGFDQ9GZP0 370 aaPredicted RBP24.23■■□□□ 1.47
VPS33A-205ENST00000541169 C4AP0C0L4 1744 aa24.23■■□□□ 1.47
VPS33A-205ENST00000541169 CCDC30Q5VVM6 783 aa24.22■■□□□ 1.47
VPS33A-205ENST00000541169 DDX21Q9NR30 783 aaKnown RBP eCLIP24.22■■□□□ 1.47
VPS33A-205ENST00000541169 NBPF26B4DH59 902 aa24.21■■□□□ 1.47
VPS33A-205ENST00000541169 ZBTB7AO95365 584 aa24.21■■□□□ 1.47
VPS33A-205ENST00000541169 TWISTNBQ3B726 338 aaPredicted RBP24.21■■□□□ 1.47
VPS33A-205ENST00000541169 NBPF10Q6P3W6 841 aaKnown RBP24.21■■□□□ 1.47
VPS33A-205ENST00000541169 NBPF15Q8N660 670 aa24.21■■□□□ 1.47
VPS33A-205ENST00000541169 C8orf58Q8NAV2 365 aa24.21■■□□□ 1.47
VPS33A-205ENST00000541169 SLFN5Q08AF3 891 aa24.2■■□□□ 1.46
VPS33A-205ENST00000541169 KRT24Q2M2I5 525 aa24.2■■□□□ 1.46
VPS33A-205ENST00000541169 HYPKQ9NX55 129 aa24.2■■□□□ 1.46
VPS33A-205ENST00000541169 ZNF330Q9Y3S2 320 aaPredicted RBP24.2■■□□□ 1.46
VPS33A-205ENST00000541169 CLEC4GQ6UXB4 293 aa24.19■■□□□ 1.46
VPS33A-205ENST00000541169 DZIP3Q86Y13 1208 aaKnown RBP24.19■■□□□ 1.46
VPS33A-205ENST00000541169 ZNF652Q9Y2D9 606 aa24.19■■□□□ 1.46
VPS33A-205ENST00000541169 ZBED9Q6R2W3 1325 aa24.18■■□□□ 1.46
VPS33A-205ENST00000541169 GYS1P13807 737 aa24.18■■□□□ 1.46
VPS33A-205ENST00000541169 ZNF428Q96B54 188 aa24.18■■□□□ 1.46
VPS33A-205ENST00000541169 ERVV-1B6SEH8 477 aa24.17■■□□□ 1.46
VPS33A-205ENST00000541169 KIF6Q6ZMV9 814 aa24.17■■□□□ 1.46
VPS33A-205ENST00000541169 STK31Q9BXU1 1019 aa24.17■■□□□ 1.46
VPS33A-205ENST00000541169 SPINK5Q9NQ38 1064 aaPredicted RBP24.17■■□□□ 1.46
VPS33A-205ENST00000541169 ATF5Q9Y2D1 282 aaPredicted RBP24.17■■□□□ 1.46
VPS33A-205ENST00000541169 ELL2O00472 640 aaPredicted RBP24.16■■□□□ 1.46
VPS33A-205ENST00000541169 CT47B1P0C2W7 299 aaPredicted RBP24.16■■□□□ 1.46
VPS33A-205ENST00000541169 MYL6BP14649 208 aa24.16■■□□□ 1.46
VPS33A-205ENST00000541169 EXOSC9Q06265 439 aaKnown RBP24.16■■□□□ 1.46
VPS33A-205ENST00000541169 PDIA6Q15084 440 aa24.16■■□□□ 1.46
VPS33A-205ENST00000541169 USPL1Q5W0Q7 1092 aa24.16■■□□□ 1.46
VPS33A-205ENST00000541169 TRMT2AQ8IZ69 625 aaKnown RBP24.16■■□□□ 1.46
VPS33A-205ENST00000541169 CACNA1FO60840 1977 aa24.15■■□□□ 1.46
VPS33A-205ENST00000541169 SMIM5Q71RC9 77 aa24.15■■□□□ 1.46
VPS33A-205ENST00000541169 ARXQ96QS3 562 aa24.15■■□□□ 1.46
VPS33A-205ENST00000541169 SGIP1Q9BQI5 828 aa24.15■■□□□ 1.46
VPS33A-205ENST00000541169 CHPF2Q9P2E5 772 aa24.15■■□□□ 1.46
VPS33A-205ENST00000541169 SCN7AQ01118 1682 aa24.15■■□□□ 1.46
VPS33A-205ENST00000541169 PTGER2P43116 358 aa24.14■■□□□ 1.45
VPS33A-205ENST00000541169 TSPYL6Q8N831 410 aa24.14■■□□□ 1.45
VPS33A-205ENST00000541169 TBC1D2BQ9UPU7 963 aa24.14■■□□□ 1.45
VPS33A-205ENST00000541169 VAMP4O75379 141 aa24.13■■□□□ 1.45
VPS33A-205ENST00000541169 CAMTA2O94983 1202 aa24.13■■□□□ 1.45
VPS33A-205ENST00000541169 PPP1R1BQ9UD71 204 aaPredicted RBP24.13■■□□□ 1.45
VPS33A-205ENST00000541169 BCORQ6W2J9 1755 aa24.13■■□□□ 1.45
VPS33A-205ENST00000541169 MAP3K15Q6ZN16 1313 aa24.12■■□□□ 1.45
VPS33A-205ENST00000541169 PIP4K2AP48426 406 aaPredicted RBP24.12■■□□□ 1.45
VPS33A-205ENST00000541169 LRP10Q7Z4F1 713 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms