RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 SLC15A2Q16348 729 aa22.64■■□□□ 1.21
CLSTN3-210ENST00000540931 KCNQ3O43525 872 aa22.63■■□□□ 1.21
CLSTN3-210ENST00000540931 SLC4A9Q96Q91 983 aa22.63■■□□□ 1.21
CLSTN3-210ENST00000540931 CYP19A1P11511 503 aaPredicted RBP22.62■■□□□ 1.21
CLSTN3-210ENST00000540931 ITPK1Q13572 414 aa22.62■■□□□ 1.21
CLSTN3-210ENST00000540931 DNAJC10Q8IXB1 793 aa22.62■■□□□ 1.21
CLSTN3-210ENST00000540931 ZNF428Q96B54 188 aa22.62■■□□□ 1.21
CLSTN3-210ENST00000540931 CCDC87Q9NVE4 849 aa22.62■■□□□ 1.21
CLSTN3-210ENST00000540931 TAF1LQ8IZX4 1826 aa22.61■■□□□ 1.21
CLSTN3-210ENST00000540931 CT47B1P0C2W7 299 aaPredicted RBP22.61■■□□□ 1.21
CLSTN3-210ENST00000540931 SSFA2P28290 1259 aa22.61■■□□□ 1.21
CLSTN3-210ENST00000540931 SLFN5Q08AF3 891 aa22.61■■□□□ 1.21
CLSTN3-210ENST00000540931 SGIP1Q9BQI5 828 aa22.61■■□□□ 1.21
CLSTN3-210ENST00000540931 SYT17Q9BSW7 474 aa22.61■■□□□ 1.21
CLSTN3-210ENST00000540931 TFCP2L1Q9NZI6 479 aa22.61■■□□□ 1.21
CLSTN3-210ENST00000540931 RTCBQ9Y3I0 505 aaKnown RBP22.61■■□□□ 1.21
CLSTN3-210ENST00000540931 FANCIQ9NVI1 1328 aa22.6■■□□□ 1.21
CLSTN3-210ENST00000540931 CRKLP46109 303 aaKnown RBP22.6■■□□□ 1.21
CLSTN3-210ENST00000540931 LINC00116Q8NCU8 138 aa22.6■■□□□ 1.21
CLSTN3-210ENST00000540931 AKT1S1Q96B36 256 aa22.6■■□□□ 1.21
CLSTN3-210ENST00000540931 FHDC1Q9C0D6 1143 aaPredicted RBP22.6■■□□□ 1.21
CLSTN3-210ENST00000540931 C4BP0C0L5 1744 aa22.6■■□□□ 1.21
CLSTN3-210ENST00000540931 A0A087WZG4 1122 aa22.59■■□□□ 1.21
CLSTN3-210ENST00000540931 RPS6KA4O75676 772 aa22.59■■□□□ 1.21
CLSTN3-210ENST00000540931 DUSP27Q5VZP5 1158 aa22.59■■□□□ 1.21
CLSTN3-210ENST00000540931 ZNF784Q8NCA9 323 aaPredicted RBP22.59■■□□□ 1.21
CLSTN3-210ENST00000540931 MTFR1LQ9H019 292 aa22.59■■□□□ 1.21
CLSTN3-210ENST00000540931 COL5A3P25940 1745 aaPredicted RBP22.59■■□□□ 1.21
CLSTN3-210ENST00000540931 UTRNP46939 3433 aa22.58■■□□□ 1.21
CLSTN3-210ENST00000540931 IL6STP40189 918 aaPredicted RBP22.58■■□□□ 1.21
CLSTN3-210ENST00000540931 TJP1Q07157 1748 aa22.57■■□□□ 1.2
CLSTN3-210ENST00000540931 SENP3-EIF4A1A0A087X0R7 540 aa22.57■■□□□ 1.2
CLSTN3-210ENST00000540931 CCDC30Q5VVM6 783 aa22.57■■□□□ 1.2
CLSTN3-210ENST00000540931 TRMT2AQ8IZ69 625 aaKnown RBP22.57■■□□□ 1.2
CLSTN3-210ENST00000540931 LAMB4A4D0S4 1761 aa22.56■■□□□ 1.2
CLSTN3-210ENST00000540931 GNPATO15228 680 aa22.56■■□□□ 1.2
CLSTN3-210ENST00000540931 TWISTNBQ3B726 338 aaPredicted RBP22.56■■□□□ 1.2
CLSTN3-210ENST00000540931 TRAPPC3LQ5T215 181 aa22.56■■□□□ 1.2
CLSTN3-210ENST00000540931 SLC16A10Q8TF71 515 aa22.56■■□□□ 1.2
CLSTN3-210ENST00000540931 TSR2Q969E8 191 aaKnown RBP22.56■■□□□ 1.2
CLSTN3-210ENST00000540931 USP16Q9Y5T5 823 aa22.56■■□□□ 1.2
CLSTN3-210ENST00000540931 KCNQ4P56696 695 aa22.55■■□□□ 1.2
CLSTN3-210ENST00000540931 HDGFL1Q5TGJ6 251 aa22.55■■□□□ 1.2
CLSTN3-210ENST00000540931 DBF4Q9UBU7 674 aaPredicted RBP22.55■■□□□ 1.2
CLSTN3-210ENST00000540931 QSER1Q2KHR3 1735 aa22.54■■□□□ 1.2
CLSTN3-210ENST00000540931 RGL2O15211 777 aa22.54■■□□□ 1.2
CLSTN3-210ENST00000540931 INTS5Q6P9B9 1019 aaKnown RBP22.54■■□□□ 1.2
CLSTN3-210ENST00000540931 STK31Q9BXU1 1019 aa22.54■■□□□ 1.2
CLSTN3-210ENST00000540931 EIF2S2P20042 333 aaKnown RBP22.52■■□□□ 1.2
CLSTN3-210ENST00000540931 EXOSC9Q06265 439 aaKnown RBP22.52■■□□□ 1.2
CLSTN3-210ENST00000540931 C8orf58Q8NAV2 365 aa22.52■■□□□ 1.2
CLSTN3-210ENST00000540931 SPINK5Q9NQ38 1064 aaPredicted RBP22.52■■□□□ 1.2
CLSTN3-210ENST00000540931 DDX21Q9NR30 783 aaKnown RBP eCLIP22.52■■□□□ 1.2
CLSTN3-210ENST00000540931 HYPKQ9NX55 129 aa22.52■■□□□ 1.2
CLSTN3-210ENST00000540931 RFC4P35249 363 aa22.51■■□□□ 1.19
CLSTN3-210ENST00000540931 EIF5P55010 431 aaKnown RBP22.51■■□□□ 1.19
CLSTN3-210ENST00000540931 ZNF827Q17R98 1081 aa22.51■■□□□ 1.19
CLSTN3-210ENST00000540931 ARXQ96QS3 562 aa22.51■■□□□ 1.19
CLSTN3-210ENST00000540931 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.5■■□□□ 1.19
CLSTN3-210ENST00000540931 CANXP27824 592 aaKnown RBP22.5■■□□□ 1.19
CLSTN3-210ENST00000540931 ZBTB1Q9Y2K1 713 aa22.5■■□□□ 1.19
CLSTN3-210ENST00000540931 ZPR1O75312 459 aa22.49■■□□□ 1.19
CLSTN3-210ENST00000540931 A1BGP04217 495 aa22.49■■□□□ 1.19
CLSTN3-210ENST00000540931 PRAMEF22A3QJZ6 481 aa22.48■■□□□ 1.19
CLSTN3-210ENST00000540931 ELL2O00472 640 aaPredicted RBP22.48■■□□□ 1.19
CLSTN3-210ENST00000540931 VAMP4O75379 141 aa22.48■■□□□ 1.19
CLSTN3-210ENST00000540931 CDCA7LQ96GN5 454 aa22.48■■□□□ 1.19
CLSTN3-210ENST00000540931 COL15A1P39059 1388 aa22.48■■□□□ 1.19
CLSTN3-210ENST00000540931 UBR3Q6ZT12 1888 aa22.47■■□□□ 1.19
CLSTN3-210ENST00000540931 CHD4Q14839 1912 aa22.47■■□□□ 1.19
CLSTN3-210ENST00000540931 PNPLA7Q6ZV29 1317 aa22.47■■□□□ 1.19
CLSTN3-210ENST00000540931 MYH14Q7Z406 1995 aaKnown RBP22.47■■□□□ 1.19
CLSTN3-210ENST00000540931 MSH5O43196 834 aa22.46■■□□□ 1.19
CLSTN3-210ENST00000540931 KRT24Q2M2I5 525 aa22.46■■□□□ 1.19
CLSTN3-210ENST00000540931 ALDH1L2Q3SY69 923 aa22.46■■□□□ 1.19
CLSTN3-210ENST00000540931 ZNF652Q9Y2D9 606 aa22.46■■□□□ 1.19
CLSTN3-210ENST00000540931 CACNA1FO60840 1977 aa22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 PHF14O94880 888 aa22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 DDX58O95786 925 aaKnown RBP22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 CLEC4GQ6UXB4 293 aa22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 KIF6Q6ZMV9 814 aa22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 NLGN1Q8N2Q7 840 aa22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 TSPYL6Q8N831 410 aa22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 ARHGEF1Q92888 912 aaKnown RBP22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 NARFQ9UHQ1 456 aa22.45■■□□□ 1.18
CLSTN3-210ENST00000540931 ERVV-1B6SEH8 477 aa22.44■■□□□ 1.18
CLSTN3-210ENST00000540931 NBPF26B4DH59 902 aa22.43■■□□□ 1.18
CLSTN3-210ENST00000540931 NBPF10Q6P3W6 841 aaKnown RBP22.43■■□□□ 1.18
CLSTN3-210ENST00000540931 DZIP3Q86Y13 1208 aaKnown RBP22.43■■□□□ 1.18
CLSTN3-210ENST00000540931 COL23A1Q86Y22 540 aaPredicted RBP22.43■■□□□ 1.18
CLSTN3-210ENST00000540931 NBPF15Q8N660 670 aa22.43■■□□□ 1.18
CLSTN3-210ENST00000540931 CHPF2Q9P2E5 772 aa22.43■■□□□ 1.18
CLSTN3-210ENST00000540931 ZNF330Q9Y3S2 320 aaPredicted RBP22.43■■□□□ 1.18
CLSTN3-210ENST00000540931 USP42Q9H9J4 1324 aaKnown RBP22.42■■□□□ 1.18
CLSTN3-210ENST00000540931 MYL6BP14649 208 aa22.42■■□□□ 1.18
CLSTN3-210ENST00000540931 PDIA6Q15084 440 aa22.42■■□□□ 1.18
CLSTN3-210ENST00000540931 SLC4A2P04920 1241 aa22.4■■□□□ 1.18
CLSTN3-210ENST00000540931 C1QTNF8P60827 252 aa22.4■■□□□ 1.18
CLSTN3-210ENST00000540931 HSP90AB3PQ58FF7 597 aa22.4■■□□□ 1.18
CLSTN3-210ENST00000540931 NECTIN2Q92692 538 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms