RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PDGFDQ9GZP0 370 aaPredicted RBP16.96■□□□□ 0.31
CCDC42-202ENST00000539522 TSPYL6Q8N831 410 aa16.95■□□□□ 0.3
CCDC42-202ENST00000539522 CNTNAP4Q9C0A0 1308 aa16.95■□□□□ 0.3
CCDC42-202ENST00000539522 SLFN5Q08AF3 891 aa16.94■□□□□ 0.3
CCDC42-202ENST00000539522 NBPF26B4DH59 902 aa16.93■□□□□ 0.3
CCDC42-202ENST00000539522 SNRPA1P09661 255 aaKnown RBP16.93■□□□□ 0.3
CCDC42-202ENST00000539522 CRKLP46109 303 aaKnown RBP16.93■□□□□ 0.3
CCDC42-202ENST00000539522 CALD1Q05682 793 aaKnown RBP16.93■□□□□ 0.3
CCDC42-202ENST00000539522 SLC15A2Q16348 729 aa16.93■□□□□ 0.3
CCDC42-202ENST00000539522 NBPF14Q5TI25 921 aa16.93■□□□□ 0.3
CCDC42-202ENST00000539522 NBPF10Q6P3W6 841 aaKnown RBP16.93■□□□□ 0.3
CCDC42-202ENST00000539522 NBPF15Q8N660 670 aa16.93■□□□□ 0.3
CCDC42-202ENST00000539522 A1BGP04217 495 aa16.92■□□□□ 0.3
CCDC42-202ENST00000539522 CENPBP07199 599 aaPredicted RBP16.92■□□□□ 0.3
CCDC42-202ENST00000539522 PIP4K2AP48426 406 aaPredicted RBP16.92■□□□□ 0.3
CCDC42-202ENST00000539522 LRP10Q7Z4F1 713 aa16.92■□□□□ 0.3
CCDC42-202ENST00000539522 ZBTB1Q9Y2K1 713 aa16.92■□□□□ 0.3
CCDC42-202ENST00000539522 COL24A1Q17RW2 1714 aa16.92■□□□□ 0.3
CCDC42-202ENST00000539522 ZBED9Q6R2W3 1325 aa16.92■□□□□ 0.3
CCDC42-202ENST00000539522 PNPLA7Q6ZV29 1317 aa16.92■□□□□ 0.3
CCDC42-202ENST00000539522 GOLGA2Q08379 1002 aa16.91■□□□□ 0.3
CCDC42-202ENST00000539522 PDIA6Q15084 440 aa16.91■□□□□ 0.3
CCDC42-202ENST00000539522 RC3H1Q5TC82 1133 aaKnown RBP16.91■□□□□ 0.3
CCDC42-202ENST00000539522 PSDA5PKW4 1024 aaPredicted RBP16.9■□□□□ 0.3
CCDC42-202ENST00000539522 R3HDM1Q15032 1099 aaKnown RBP16.9■□□□□ 0.3
CCDC42-202ENST00000539522 DUSP27Q5VZP5 1158 aa16.9■□□□□ 0.3
CCDC42-202ENST00000539522 ELL2O00472 640 aaPredicted RBP16.89■□□□□ 0.29
CCDC42-202ENST00000539522 EXOSC9Q06265 439 aaKnown RBP16.89■□□□□ 0.29
CCDC42-202ENST00000539522 PROSER3Q2NL68 480 aa16.89■□□□□ 0.29
CCDC42-202ENST00000539522 CCDC87Q9NVE4 849 aa16.89■□□□□ 0.29
CCDC42-202ENST00000539522 SOS1Q07889 1333 aaPredicted RBP16.89■□□□□ 0.29
CCDC42-202ENST00000539522 BCORQ6W2J9 1755 aa16.89■□□□□ 0.29
CCDC42-202ENST00000539522 COL23A1Q86Y22 540 aaPredicted RBP16.88■□□□□ 0.29
CCDC42-202ENST00000539522 SCN7AQ01118 1682 aa16.88■□□□□ 0.29
CCDC42-202ENST00000539522 E9PSI1 815 aa16.87■□□□□ 0.29
CCDC42-202ENST00000539522 GNPATO15228 680 aa16.87■□□□□ 0.29
CCDC42-202ENST00000539522 VAMP4O75379 141 aa16.87■□□□□ 0.29
CCDC42-202ENST00000539522 RPS6KA4O75676 772 aa16.87■□□□□ 0.29
CCDC42-202ENST00000539522 EIF5P55010 431 aaKnown RBP16.87■□□□□ 0.29
CCDC42-202ENST00000539522 TEX13AQ9BXU3 409 aaPredicted RBP16.87■□□□□ 0.29
CCDC42-202ENST00000539522 STK32BQ9NY57 414 aa16.87■□□□□ 0.29
CCDC42-202ENST00000539522 ANXA1P04083 346 aa16.86■□□□□ 0.29
CCDC42-202ENST00000539522 HOXB7P09629 217 aa16.86■□□□□ 0.29
CCDC42-202ENST00000539522 NECTIN2Q92692 538 aa16.86■□□□□ 0.29
CCDC42-202ENST00000539522 AK7Q96M32 723 aa16.86■□□□□ 0.29
CCDC42-202ENST00000539522 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.85■□□□□ 0.29
CCDC42-202ENST00000539522 STARD3NLO95772 234 aa16.85■□□□□ 0.29
CCDC42-202ENST00000539522 CANXP27824 592 aaKnown RBP16.85■□□□□ 0.29
CCDC42-202ENST00000539522 MYH16Q9H6N6 1097 aa16.85■□□□□ 0.29
CCDC42-202ENST00000539522 TFCP2L1Q9NZI6 479 aa16.85■□□□□ 0.29
CCDC42-202ENST00000539522 PHF14O94880 888 aa16.84■□□□□ 0.29
CCDC42-202ENST00000539522 EIF2S2P20042 333 aaKnown RBP16.84■□□□□ 0.29
CCDC42-202ENST00000539522 TWISTNBQ3B726 338 aaPredicted RBP16.84■□□□□ 0.29
CCDC42-202ENST00000539522 ARHGEF1Q92888 912 aaKnown RBP16.84■□□□□ 0.29
CCDC42-202ENST00000539522 COL15A1P39059 1388 aa16.84■□□□□ 0.29
CCDC42-202ENST00000539522 SSFA2P28290 1259 aa16.83■□□□□ 0.28
CCDC42-202ENST00000539522 BCL2L12Q9HB09 334 aa16.83■□□□□ 0.28
CCDC42-202ENST00000539522 CHPF2Q9P2E5 772 aa16.83■□□□□ 0.28
CCDC42-202ENST00000539522 TCERG1O14776 1098 aaKnown RBP16.82■□□□□ 0.28
CCDC42-202ENST00000539522 IL6STP40189 918 aaPredicted RBP16.82■□□□□ 0.28
CCDC42-202ENST00000539522 HDGFL1Q5TGJ6 251 aa16.82■□□□□ 0.28
CCDC42-202ENST00000539522 SRP68Q9UHB9 627 aaKnown RBP16.82■□□□□ 0.28
CCDC42-202ENST00000539522 RTCBQ9Y3I0 505 aaKnown RBP16.82■□□□□ 0.28
CCDC42-202ENST00000539522 SRCAPQ6ZRS2 3230 aa16.82■□□□□ 0.28
CCDC42-202ENST00000539522 ERBB4Q15303 1308 aa16.81■□□□□ 0.28
CCDC42-202ENST00000539522 NUP98P52948 1817 aa16.81■□□□□ 0.28
CCDC42-202ENST00000539522 USP42Q9H9J4 1324 aaKnown RBP16.8■□□□□ 0.28
CCDC42-202ENST00000539522 MYL6BP14649 208 aa16.8■□□□□ 0.28
CCDC42-202ENST00000539522 TTLL7Q6ZT98 887 aa16.8■□□□□ 0.28
CCDC42-202ENST00000539522 DDX21Q9NR30 783 aaKnown RBP eCLIP16.8■□□□□ 0.28
CCDC42-202ENST00000539522 ARFGEF2Q9Y6D5 1785 aa16.79■□□□□ 0.28
CCDC42-202ENST00000539522 CACNA1FO60840 1977 aa16.79■□□□□ 0.28
CCDC42-202ENST00000539522 CAMTA2O94983 1202 aa16.79■□□□□ 0.28
CCDC42-202ENST00000539522 ADRA2BP18089 450 aa16.79■□□□□ 0.28
CCDC42-202ENST00000539522 TRAPPC3LQ5T215 181 aa16.79■□□□□ 0.28
CCDC42-202ENST00000539522 G2E3Q7L622 706 aa16.79■□□□□ 0.28
CCDC42-202ENST00000539522 PHAXQ9H814 394 aaKnown RBP16.79■□□□□ 0.28
CCDC42-202ENST00000539522 GYS1P13807 737 aa16.78■□□□□ 0.28
CCDC42-202ENST00000539522 SGIP1Q9BQI5 828 aa16.78■□□□□ 0.28
CCDC42-202ENST00000539522 TBC1D2BQ9UPU7 963 aa16.78■□□□□ 0.28
CCDC42-202ENST00000539522 ANKRD36CQ5JPF3 1778 aa16.77■□□□□ 0.28
CCDC42-202ENST00000539522 ZBTB7AO95365 584 aa16.77■□□□□ 0.28
CCDC42-202ENST00000539522 USPL1Q5W0Q7 1092 aa16.77■□□□□ 0.28
CCDC42-202ENST00000539522 NARFQ9UHQ1 456 aa16.77■□□□□ 0.28
CCDC42-202ENST00000539522 AFDNP55196 1824 aaKnown RBP16.76■□□□□ 0.27
CCDC42-202ENST00000539522 PTGER2P43116 358 aa16.76■□□□□ 0.27
CCDC42-202ENST00000539522 FKBP8Q14318 412 aa16.76■□□□□ 0.27
CCDC42-202ENST00000539522 HLFQ16534 295 aa16.76■□□□□ 0.27
CCDC42-202ENST00000539522 XAGE3Q8WTP9 111 aa16.76■□□□□ 0.27
CCDC42-202ENST00000539522 DBF4Q9UBU7 674 aaPredicted RBP16.76■□□□□ 0.27
CCDC42-202ENST00000539522 NRXN2Q9P2S2 1712 aa16.76■□□□□ 0.27
CCDC42-202ENST00000539522 CCDC30Q5VVM6 783 aa16.75■□□□□ 0.27
CCDC42-202ENST00000539522 MSL1Q68DK7 614 aa16.75■□□□□ 0.27
CCDC42-202ENST00000539522 COPS6Q7L5N1 327 aa16.75■□□□□ 0.27
CCDC42-202ENST00000539522 DZIP3Q86Y13 1208 aaKnown RBP16.75■□□□□ 0.27
CCDC42-202ENST00000539522 FLAD1Q8NFF5 587 aa16.75■□□□□ 0.27
CCDC42-202ENST00000539522 SSH1Q8WYL5 1049 aa16.75■□□□□ 0.27
CCDC42-202ENST00000539522 ZNF330Q9Y3S2 320 aaPredicted RBP16.75■□□□□ 0.27
CCDC42-202ENST00000539522 HMGB2P26583 209 aaKnown RBP16.74■□□□□ 0.27
CCDC42-202ENST00000539522 MRPL50Q8N5N7 158 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms