RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SOS1Q07889 1333 aaPredicted RBP19.76■□□□□ 0.75
CPSF1-208ENST00000532560 NEUROD2Q15784 382 aa19.75■□□□□ 0.75
CPSF1-208ENST00000532560 APAF1O14727 1248 aa19.74■□□□□ 0.75
CPSF1-208ENST00000532560 MSL1Q68DK7 614 aa19.74■□□□□ 0.75
CPSF1-208ENST00000532560 ARHGEF1Q92888 912 aaKnown RBP19.74■□□□□ 0.75
CPSF1-208ENST00000532560 BABAM1Q9NWV8 329 aa19.74■□□□□ 0.75
CPSF1-208ENST00000532560 MIS18AQ9NYP9 233 aa19.74■□□□□ 0.75
CPSF1-208ENST00000532560 ZBTB1Q9Y2K1 713 aa19.74■□□□□ 0.75
CPSF1-208ENST00000532560 LAMB4A4D0S4 1761 aa19.74■□□□□ 0.75
CPSF1-208ENST00000532560 SNRPA1P09661 255 aaKnown RBP19.73■□□□□ 0.75
CPSF1-208ENST00000532560 ARXQ96QS3 562 aa19.73■□□□□ 0.75
CPSF1-208ENST00000532560 COL15A1P39059 1388 aa19.72■□□□□ 0.75
CPSF1-208ENST00000532560 RFC4P35249 363 aa19.72■□□□□ 0.75
CPSF1-208ENST00000532560 EIF4A1P60842 406 aaKnown RBP19.71■□□□□ 0.75
CPSF1-208ENST00000532560 TSPYL4Q9UJ04 414 aa19.71■□□□□ 0.75
CPSF1-208ENST00000532560 USP42Q9H9J4 1324 aaKnown RBP19.71■□□□□ 0.75
CPSF1-208ENST00000532560 PRAMEF22A3QJZ6 481 aa19.69■□□□□ 0.74
CPSF1-208ENST00000532560 GYS1P13807 737 aa19.68■□□□□ 0.74
CPSF1-208ENST00000532560 CANXP27824 592 aaKnown RBP19.68■□□□□ 0.74
CPSF1-208ENST00000532560 EIF5P55010 431 aaKnown RBP19.68■□□□□ 0.74
CPSF1-208ENST00000532560 NLGN1Q8N2Q7 840 aa19.68■□□□□ 0.74
CPSF1-208ENST00000532560 FHDC1Q9C0D6 1143 aaPredicted RBP19.68■□□□□ 0.74
CPSF1-208ENST00000532560 USP16Q9Y5T5 823 aa19.68■□□□□ 0.74
CPSF1-208ENST00000532560 CHL1O00533 1208 aa19.67■□□□□ 0.74
CPSF1-208ENST00000532560 GIGYF1O75420 1035 aaPredicted RBP19.67■□□□□ 0.74
CPSF1-208ENST00000532560 IL6STP40189 918 aaPredicted RBP19.67■□□□□ 0.74
CPSF1-208ENST00000532560 SCN7AQ01118 1682 aa19.66■□□□□ 0.74
CPSF1-208ENST00000532560 CALD1Q05682 793 aaKnown RBP19.66■□□□□ 0.74
CPSF1-208ENST00000532560 NCBP3Q53F19 620 aaKnown RBP19.66■□□□□ 0.74
CPSF1-208ENST00000532560 SRP68Q9UHB9 627 aaKnown RBP19.66■□□□□ 0.74
CPSF1-208ENST00000532560 A0A087WZG4 1122 aa19.65■□□□□ 0.74
CPSF1-208ENST00000532560 ZPR1O75312 459 aa19.65■□□□□ 0.74
CPSF1-208ENST00000532560 A1BGP04217 495 aa19.65■□□□□ 0.74
CPSF1-208ENST00000532560 CCDC27Q2M243 656 aa19.65■□□□□ 0.74
CPSF1-208ENST00000532560 CFAP44Q96MT7 982 aa19.65■□□□□ 0.74
CPSF1-208ENST00000532560 NARFQ9UHQ1 456 aa19.65■□□□□ 0.74
CPSF1-208ENST00000532560 MMP10P09238 476 aa19.64■□□□□ 0.73
CPSF1-208ENST00000532560 SYT17Q9BSW7 474 aa19.64■□□□□ 0.73
CPSF1-208ENST00000532560 USPL1Q5W0Q7 1092 aa19.63■□□□□ 0.73
CPSF1-208ENST00000532560 IFT57Q9NWB7 429 aa19.63■□□□□ 0.73
CPSF1-208ENST00000532560 BCORQ6W2J9 1755 aa19.62■□□□□ 0.73
CPSF1-208ENST00000532560 ZNF853P0CG23 659 aa19.62■□□□□ 0.73
CPSF1-208ENST00000532560 FKBP8Q14318 412 aa19.62■□□□□ 0.73
CPSF1-208ENST00000532560 FAM9BQ8IZU0 186 aa19.62■□□□□ 0.73
CPSF1-208ENST00000532560 NBPF26B4DH59 902 aa19.61■□□□□ 0.73
CPSF1-208ENST00000532560 CCER2I3L3R5 266 aa19.61■□□□□ 0.73
CPSF1-208ENST00000532560 NBPF10Q6P3W6 841 aaKnown RBP19.61■□□□□ 0.73
CPSF1-208ENST00000532560 NPM2Q86SE8 214 aaKnown RBP19.61■□□□□ 0.73
CPSF1-208ENST00000532560 NBPF15Q8N660 670 aa19.61■□□□□ 0.73
CPSF1-208ENST00000532560 ZNF330Q9Y3S2 320 aaPredicted RBP19.61■□□□□ 0.73
CPSF1-208ENST00000532560 LAS1LQ9Y4W2 734 aaKnown RBP19.61■□□□□ 0.73
CPSF1-208ENST00000532560 ERBB4Q15303 1308 aa19.6■□□□□ 0.73
CPSF1-208ENST00000532560 PIP4K2AP48426 406 aaPredicted RBP19.6■□□□□ 0.73
CPSF1-208ENST00000532560 GNAI1P63096 354 aa19.6■□□□□ 0.73
CPSF1-208ENST00000532560 KLHL34Q8N239 644 aa19.6■□□□□ 0.73
CPSF1-208ENST00000532560 BCL2L12Q9HB09 334 aa19.6■□□□□ 0.73
CPSF1-208ENST00000532560 MBIPQ9NS73 344 aa19.6■□□□□ 0.73
CPSF1-208ENST00000532560 CD2APQ9Y5K6 639 aa19.6■□□□□ 0.73
CPSF1-208ENST00000532560 WWC1Q8IX03 1113 aa19.59■□□□□ 0.73
CPSF1-208ENST00000532560 C10orf71Q711Q0 1435 aa19.59■□□□□ 0.73
CPSF1-208ENST00000532560 KIF13BQ9NQT8 1826 aa19.58■□□□□ 0.73
CPSF1-208ENST00000532560 CAMTA2O94983 1202 aa19.58■□□□□ 0.72
CPSF1-208ENST00000532560 HOXB7P09629 217 aa19.58■□□□□ 0.72
CPSF1-208ENST00000532560 DIEXFQ68CQ4 756 aaKnown RBP19.58■□□□□ 0.72
CPSF1-208ENST00000532560 NGEFQ8N5V2 710 aa19.58■□□□□ 0.72
CPSF1-208ENST00000532560 PARP3Q9Y6F1 533 aa19.58■□□□□ 0.72
CPSF1-208ENST00000532560 TM4SF1P30408 202 aa19.57■□□□□ 0.72
CPSF1-208ENST00000532560 DDR1Q08345 913 aa19.57■□□□□ 0.72
CPSF1-208ENST00000532560 DZIP3Q86Y13 1208 aaKnown RBP19.57■□□□□ 0.72
CPSF1-208ENST00000532560 TBC1D2BQ9UPU7 963 aa19.57■□□□□ 0.72
CPSF1-208ENST00000532560 IL16Q14005 1332 aa19.56■□□□□ 0.72
CPSF1-208ENST00000532560 SENP3-EIF4A1A0A087X0R7 540 aa19.56■□□□□ 0.72
CPSF1-208ENST00000532560 POLRMTO00411 1230 aaKnown RBP19.56■□□□□ 0.72
CPSF1-208ENST00000532560 RGL2O15211 777 aa19.56■□□□□ 0.72
CPSF1-208ENST00000532560 NFIXQ14938 502 aa19.56■□□□□ 0.72
CPSF1-208ENST00000532560 KRT24Q2M2I5 525 aa19.56■□□□□ 0.72
CPSF1-208ENST00000532560 NLGN2Q8NFZ4 835 aa19.56■□□□□ 0.72
CPSF1-208ENST00000532560 NRXN2Q9P2S2 1712 aa19.55■□□□□ 0.72
CPSF1-208ENST00000532560 EIF2S2P20042 333 aaKnown RBP19.53■□□□□ 0.72
CPSF1-208ENST00000532560 KIAA1551Q9HCM1 1747 aa19.53■□□□□ 0.72
CPSF1-208ENST00000532560 AFDNP55196 1824 aaKnown RBP19.53■□□□□ 0.72
CPSF1-208ENST00000532560 PDIA6Q15084 440 aa19.52■□□□□ 0.72
CPSF1-208ENST00000532560 DUSP27Q5VZP5 1158 aa19.52■□□□□ 0.72
CPSF1-208ENST00000532560 TBC1D9BQ66K14 1250 aa19.52■□□□□ 0.72
CPSF1-208ENST00000532560 CLEC4GQ6UXB4 293 aa19.52■□□□□ 0.72
CPSF1-208ENST00000532560 LRP10Q7Z4F1 713 aa19.52■□□□□ 0.72
CPSF1-208ENST00000532560 WDR63Q8IWG1 891 aa19.52■□□□□ 0.72
CPSF1-208ENST00000532560 ZNF652Q9Y2D9 606 aa19.52■□□□□ 0.72
CPSF1-208ENST00000532560 CARMIL3Q8ND23 1372 aa19.52■□□□□ 0.72
CPSF1-208ENST00000532560 MYL6BP14649 208 aa19.51■□□□□ 0.71
CPSF1-208ENST00000532560 HDGFL1Q5TGJ6 251 aa19.51■□□□□ 0.71
CPSF1-208ENST00000532560 PXDNLA1KZ92 1463 aa19.51■□□□□ 0.71
CPSF1-208ENST00000532560 DCAF8L1A6NGE4 600 aa19.5■□□□□ 0.71
CPSF1-208ENST00000532560 PROSER3Q2NL68 480 aa19.5■□□□□ 0.71
CPSF1-208ENST00000532560 BICDL1Q6ZP65 573 aa19.5■□□□□ 0.71
CPSF1-208ENST00000532560 SALL2Q9Y467 1007 aaPredicted RBP19.5■□□□□ 0.71
CPSF1-208ENST00000532560 MAP3K15Q6ZN16 1313 aa19.5■□□□□ 0.71
CPSF1-208ENST00000532560 ERVV-1B6SEH8 477 aa19.49■□□□□ 0.71
CPSF1-208ENST00000532560 SERPINB2P05120 415 aa19.49■□□□□ 0.71
CPSF1-208ENST00000532560 TGFB2P61812 414 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms