RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 HINFPQ9BQA5 517 aa9.15□□□□□ -0.94
CD44-231ENST00000531110 TIMMDC1Q9NPL8 285 aa9.15□□□□□ -0.94
CD44-231ENST00000531110 C21orf2O43822 256 aa9.14□□□□□ -0.95
CD44-231ENST00000531110 LBRQ14739 615 aaKnown RBP9.14□□□□□ -0.95
CD44-231ENST00000531110 NBPF1Q3BBV0 1214 aa9.14□□□□□ -0.95
CD44-231ENST00000531110 CCDC155Q8N6L0 562 aa9.14□□□□□ -0.95
CD44-231ENST00000531110 USP3Q9Y6I4 520 aa9.14□□□□□ -0.95
CD44-231ENST00000531110 ATAD2Q6PL18 1390 aa9.13□□□□□ -0.95
CD44-231ENST00000531110 SERTM1A2A2V5 107 aa9.13□□□□□ -0.95
CD44-231ENST00000531110 TMEM88BA6NKF7 163 aa9.13□□□□□ -0.95
CD44-231ENST00000531110 RHOQP17081 205 aa9.13□□□□□ -0.95
CD44-231ENST00000531110 NOS2P35228 1153 aa9.13□□□□□ -0.95
CD44-231ENST00000531110 C2orf49Q9BVC5 232 aaPredicted RBP9.13□□□□□ -0.95
CD44-231ENST00000531110 CABP1Q9NZU7 370 aa9.13□□□□□ -0.95
CD44-231ENST00000531110 EML1O00423 815 aa9.12□□□□□ -0.95
CD44-231ENST00000531110 F11P03951 625 aa9.12□□□□□ -0.95
CD44-231ENST00000531110 PLA2G4AP47712 749 aa9.12□□□□□ -0.95
CD44-231ENST00000531110 OCLNQ16625 522 aa9.12□□□□□ -0.95
CD44-231ENST00000531110 C1orf53Q5VUE5 145 aa9.12□□□□□ -0.95
CD44-231ENST00000531110 ZDHHC1Q8WTX9 485 aa9.12□□□□□ -0.95
CD44-231ENST00000531110 NANOS1Q8WY41 292 aaKnown RBP9.12□□□□□ -0.95
CD44-231ENST00000531110 L3MBTL2Q969R5 705 aa9.12□□□□□ -0.95
CD44-231ENST00000531110 H7C1W4 665 aa9.11□□□□□ -0.95
CD44-231ENST00000531110 PPP1R12BO60237 982 aaPredicted RBP9.11□□□□□ -0.95
CD44-231ENST00000531110 PPFIA3O75145 1194 aa9.11□□□□□ -0.95
CD44-231ENST00000531110 VSIG8P0DPA2 414 aa9.11□□□□□ -0.95
CD44-231ENST00000531110 ITGA6P23229 1130 aa9.11□□□□□ -0.95
CD44-231ENST00000531110 SCG3Q8WXD2 468 aaKnown RBP9.11□□□□□ -0.95
CD44-231ENST00000531110 COL26A1Q96A83 441 aa9.11□□□□□ -0.95
CD44-231ENST00000531110 CRISPLD1Q9H336 500 aa9.11□□□□□ -0.95
CD44-231ENST00000531110 H3BM21 787 aa9.1□□□□□ -0.95
CD44-231ENST00000531110 TERTO14746 1132 aaKnown RBP9.1□□□□□ -0.95
CD44-231ENST00000531110 TATP17735 454 aaPredicted RBP9.09□□□□□ -0.95
CD44-231ENST00000531110 ATP4AP20648 1035 aa9.09□□□□□ -0.95
CD44-231ENST00000531110 PHKA2P46019 1235 aa9.09□□□□□ -0.95
CD44-231ENST00000531110 TRIM22Q8IYM9 498 aa9.09□□□□□ -0.95
CD44-231ENST00000531110 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.09□□□□□ -0.955e-38■■■■■ 698.7
CD44-231ENST00000531110 CXXC1Q9P0U4 656 aaPredicted RBP9.09□□□□□ -0.95
CD44-231ENST00000531110 MSX1P28360 303 aa9.08□□□□□ -0.96
CD44-231ENST00000531110 B4GALNT3Q6L9W6 998 aa9.08□□□□□ -0.96
CD44-231ENST00000531110 RETREG2Q8NC44 543 aa9.08□□□□□ -0.96
CD44-231ENST00000531110 SLC16A10Q8TF71 515 aa9.08□□□□□ -0.96
CD44-231ENST00000531110 ZNF232Q9UNY5 417 aa9.08□□□□□ -0.96
CD44-231ENST00000531110 HIF1AQ16665 826 aa9.07□□□□□ -0.96
CD44-231ENST00000531110 TBCELQ5QJ74 424 aa9.07□□□□□ -0.96
CD44-231ENST00000531110 NLRP8Q86W28 1048 aa9.07□□□□□ -0.96
CD44-231ENST00000531110 PTCD1O75127 700 aaKnown RBP9.06□□□□□ -0.96
CD44-231ENST00000531110 ATP2B4P23634 1241 aa9.06□□□□□ -0.96
CD44-231ENST00000531110 PGBD3Q8N328 593 aa9.06□□□□□ -0.96
CD44-231ENST00000531110 C7orf43Q8WVR3 580 aa9.06□□□□□ -0.96
CD44-231ENST00000531110 PRMT3O60678 531 aa9.05□□□□□ -0.96
CD44-231ENST00000531110 NFX1Q12986 1120 aaKnown RBP9.05□□□□□ -0.96
CD44-231ENST00000531110 RTN1Q16799 776 aa9.05□□□□□ -0.96
CD44-231ENST00000531110 EFHC2Q5JST6 749 aa9.05□□□□□ -0.96
CD44-231ENST00000531110 MYO19Q96H55 970 aa9.05□□□□□ -0.96
CD44-231ENST00000531110 GAS2L1Q99501 681 aaPredicted RBP9.05□□□□□ -0.96
CD44-231ENST00000531110 SLAIN2Q9P270 581 aa9.05□□□□□ -0.96
CD44-231ENST00000531110 SSFA2P28290 1259 aa9.04□□□□□ -0.96
CD44-231ENST00000531110 TXLNAP40222 546 aa9.04□□□□□ -0.96
CD44-231ENST00000531110 FKBP5Q13451 457 aaPredicted RBP9.04□□□□□ -0.96
CD44-231ENST00000531110 SAMD5Q5TGI4 173 aa9.04□□□□□ -0.96
CD44-231ENST00000531110 FIGNL1Q6PIW4 674 aa9.04□□□□□ -0.96
CD44-231ENST00000531110 IRF7Q92985 503 aa9.04□□□□□ -0.96
CD44-231ENST00000531110 VTI1AQ96AJ9 217 aa9.04□□□□□ -0.96
CD44-231ENST00000531110 AIDAQ96BJ3 306 aa9.04□□□□□ -0.96
CD44-231ENST00000531110 SV2AQ7L0J3 742 aa9.03□□□□□ -0.96
CD44-231ENST00000531110 ALDH16A1Q8IZ83 802 aa9.03□□□□□ -0.96
CD44-231ENST00000531110 CHMP7Q8WUX9 453 aaPredicted RBP9.03□□□□□ -0.96
CD44-231ENST00000531110 ZNF775Q96BV0 537 aaPredicted RBP9.03□□□□□ -0.96
CD44-231ENST00000531110 ZNF837Q96EG3 531 aaPredicted RBP9.03□□□□□ -0.96
CD44-231ENST00000531110 PRIMPOLQ96LW4 560 aa9.03□□□□□ -0.96
CD44-231ENST00000531110 PHACTR1Q9C0D0 580 aa9.03□□□□□ -0.96
CD44-231ENST00000531110 NUCKS1Q9H1E3 243 aaKnown RBP9.03□□□□□ -0.96
CD44-231ENST00000531110 PARP3Q9Y6F1 533 aa9.03□□□□□ -0.96
CD44-231ENST00000531110 DBN1Q16643 649 aa9.02□□□□□ -0.97
CD44-231ENST00000531110 SH3PXD2AQ5TCZ1 1133 aa9.02□□□□□ -0.97
CD44-231ENST00000531110 RIPOR1Q6ZS17 1223 aa9.02□□□□□ -0.97
CD44-231ENST00000531110 ZIC5Q96T25 663 aa9.02□□□□□ -0.97
CD44-231ENST00000531110 GPAMQ9HCL2 828 aa9.02□□□□□ -0.97
CD44-231ENST00000531110 CUEDC1Q9NWM3 386 aaPredicted RBP9.02□□□□□ -0.97
CD44-231ENST00000531110 ANKIB1Q9P2G1 1089 aa9.02□□□□□ -0.97
CD44-231ENST00000531110 FOXR1Q6PIV2 292 aa9.01□□□□□ -0.97
CD44-231ENST00000531110 A0A1W2PNR3 127 aa9□□□□□ -0.97
CD44-231ENST00000531110 WFS1O76024 890 aa9□□□□□ -0.97
CD44-231ENST00000531110 UBAP2LQ14157 1087 aaKnown RBP9□□□□□ -0.97
CD44-231ENST00000531110 ARSJQ5FYB0 599 aaPredicted RBP9□□□□□ -0.97
CD44-231ENST00000531110 IER5Q5VY09 327 aa9□□□□□ -0.97
CD44-231ENST00000531110 TREML4Q6UXN2 200 aa9□□□□□ -0.97
CD44-231ENST00000531110 RHPN1Q8TCX5 695 aa9□□□□□ -0.97
CD44-231ENST00000531110 CFHR5Q9BXR6 569 aa9□□□□□ -0.97
CD44-231ENST00000531110 RUBCNLQ9H714 662 aa9□□□□□ -0.97
CD44-231ENST00000531110 HCN4Q9Y3Q4 1203 aa9□□□□□ -0.97
CD44-231ENST00000531110 LGR5O75473 907 aa8.99□□□□□ -0.97
CD44-231ENST00000531110 THBS1P07996 1170 aa8.99□□□□□ -0.97
CD44-231ENST00000531110 LCE2AQ5TA79 106 aaPredicted RBP8.99□□□□□ -0.97
CD44-231ENST00000531110 BICDL1Q6ZP65 573 aa8.99□□□□□ -0.97
CD44-231ENST00000531110 QTRT2Q9H974 415 aaKnown RBP8.99□□□□□ -0.97
CD44-231ENST00000531110 PHF24Q9UPV7 400 aa8.99□□□□□ -0.97
CD44-231ENST00000531110 MTMR7Q9Y216 660 aa8.99□□□□□ -0.97
CD44-231ENST00000531110 FAM157BP0CG42 384 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms