RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 SLC9A9Q8IVB4 645 aa13.69□□□□□ -0.22
CSDE1-213ENST00000530784 ZNF837Q96EG3 531 aaPredicted RBP13.69□□□□□ -0.22
CSDE1-213ENST00000530784 PARP3Q9Y6F1 533 aa13.69□□□□□ -0.22
CSDE1-213ENST00000530784 AIDAQ96BJ3 306 aa13.68□□□□□ -0.22
CSDE1-213ENST00000530784 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.67□□□□□ -0.22
CSDE1-213ENST00000530784 SRPK2P78362 688 aaKnown RBP13.67□□□□□ -0.22
CSDE1-213ENST00000530784 ERICH6Q7L0X2 663 aa13.67□□□□□ -0.22
CSDE1-213ENST00000530784 CCDC82Q8N4S0 544 aa13.67□□□□□ -0.22
CSDE1-213ENST00000530784 TSPAN10Q9H1Z9 355 aaPredicted RBP13.67□□□□□ -0.22
CSDE1-213ENST00000530784 TIMELESSQ9UNS1 1208 aa13.67□□□□□ -0.22
CSDE1-213ENST00000530784 H7C1W4 665 aa13.66□□□□□ -0.22
CSDE1-213ENST00000530784 ZDHHC1Q8WTX9 485 aa13.66□□□□□ -0.22
CSDE1-213ENST00000530784 GMCL1Q96IK5 515 aa13.66□□□□□ -0.22
CSDE1-213ENST00000530784 ARXQ96QS3 562 aa13.66□□□□□ -0.22
CSDE1-213ENST00000530784 RUBCNLQ9H714 662 aa13.66□□□□□ -0.22
CSDE1-213ENST00000530784 NUCKS1Q9H1E3 243 aaKnown RBP13.65□□□□□ -0.22
CSDE1-213ENST00000530784 LGR5O75473 907 aa13.64□□□□□ -0.23
CSDE1-213ENST00000530784 THBS1P07996 1170 aa13.64□□□□□ -0.23
CSDE1-213ENST00000530784 TEAD4Q15561 434 aa13.64□□□□□ -0.23
CSDE1-213ENST00000530784 COL25A1Q9BXS0 654 aaPredicted RBP13.64□□□□□ -0.23
CSDE1-213ENST00000530784 ATP4AP20648 1035 aa13.63□□□□□ -0.23
CSDE1-213ENST00000530784 KRT76Q01546 638 aa13.63□□□□□ -0.23
CSDE1-213ENST00000530784 L3MBTL2Q969R5 705 aa13.63□□□□□ -0.23
CSDE1-213ENST00000530784 GTPBP3Q969Y2 492 aaKnown RBP13.63□□□□□ -0.23
CSDE1-213ENST00000530784 HINFPQ9BQA5 517 aa13.63□□□□□ -0.23
CSDE1-213ENST00000530784 RB1CC1Q8TDY2 1594 aa13.62□□□□□ -0.23
CSDE1-213ENST00000530784 GPR25O00155 361 aa13.62□□□□□ -0.23
CSDE1-213ENST00000530784 CSB-PGBD3P0DP91 1061 aa13.62□□□□□ -0.23
CSDE1-213ENST00000530784 NOS2P35228 1153 aa13.62□□□□□ -0.23
CSDE1-213ENST00000530784 RNFT1Q5M7Z0 435 aa13.62□□□□□ -0.23
CSDE1-213ENST00000530784 PGBD3Q8N328 593 aa13.62□□□□□ -0.23
CSDE1-213ENST00000530784 NBPF1Q3BBV0 1214 aa13.61□□□□□ -0.23
CSDE1-213ENST00000530784 SH3PXD2AQ5TCZ1 1133 aa13.61□□□□□ -0.23
CSDE1-213ENST00000530784 FAM200AQ8TCP9 573 aa13.61□□□□□ -0.23
CSDE1-213ENST00000530784 NOVA2Q9UNW9 492 aaKnown RBP13.61□□□□□ -0.23
CSDE1-213ENST00000530784 ZNF232Q9UNY5 417 aa13.61□□□□□ -0.23
CSDE1-213ENST00000530784 C21orf2O43822 256 aa13.6□□□□□ -0.23
CSDE1-213ENST00000530784 TXLNAP40222 546 aa13.6□□□□□ -0.23
CSDE1-213ENST00000530784 C1orf216Q8TAB5 229 aa13.6□□□□□ -0.23
CSDE1-213ENST00000530784 CNTNAP3BQ96NU0 1288 aa13.6□□□□□ -0.23
CSDE1-213ENST00000530784 CNTNAP3Q9BZ76 1288 aa13.6□□□□□ -0.23
CSDE1-213ENST00000530784 SERTM1A2A2V5 107 aa13.59□□□□□ -0.23
CSDE1-213ENST00000530784 PSMA6P60900 246 aaKnown RBP13.59□□□□□ -0.23
CSDE1-213ENST00000530784 CRISPLD1Q9H336 500 aa13.59□□□□□ -0.23
CSDE1-213ENST00000530784 ZDHHC3Q9NYG2 299 aa13.59□□□□□ -0.23
CSDE1-213ENST00000530784 ATAD2Q6PL18 1390 aa13.58□□□□□ -0.23
CSDE1-213ENST00000530784 SUPT5HO00267 1087 aaKnown RBP13.58□□□□□ -0.24
CSDE1-213ENST00000530784 PPP1R12BO60237 982 aaPredicted RBP13.58□□□□□ -0.24
CSDE1-213ENST00000530784 GAS6Q14393 721 aa13.58□□□□□ -0.24
CSDE1-213ENST00000530784 FOXR1Q6PIV2 292 aa13.58□□□□□ -0.24
CSDE1-213ENST00000530784 SCG3Q8WXD2 468 aaKnown RBP13.58□□□□□ -0.24
CSDE1-213ENST00000530784 PBXIP1Q96AQ6 731 aa13.58□□□□□ -0.24
CSDE1-213ENST00000530784 ZMIZ1Q9ULJ6 1067 aa13.58□□□□□ -0.24
CSDE1-213ENST00000530784 EML1O00423 815 aa13.57□□□□□ -0.24
CSDE1-213ENST00000530784 TATP17735 454 aaPredicted RBP13.57□□□□□ -0.24
CSDE1-213ENST00000530784 UBAP2LQ14157 1087 aaKnown RBP13.57□□□□□ -0.24
CSDE1-213ENST00000530784 ARSJQ5FYB0 599 aaPredicted RBP13.57□□□□□ -0.24
CSDE1-213ENST00000530784 EFHC2Q5JST6 749 aa13.57□□□□□ -0.24
CSDE1-213ENST00000530784 GAS2L2Q8NHY3 880 aa13.57□□□□□ -0.24
CSDE1-213ENST00000530784 ATG7O95352 703 aa13.56□□□□□ -0.24
CSDE1-213ENST00000530784 LBRQ14739 615 aaKnown RBP13.56□□□□□ -0.24
CSDE1-213ENST00000530784 INSM1Q01101 510 aaPredicted RBP13.55□□□□□ -0.24
CSDE1-213ENST00000530784 ELOAQ14241 798 aaKnown RBP13.55□□□□□ -0.24
CSDE1-213ENST00000530784 STK32AQ8WU08 396 aa13.55□□□□□ -0.24
CSDE1-213ENST00000530784 CHMP7Q8WUX9 453 aaPredicted RBP13.55□□□□□ -0.24
CSDE1-213ENST00000530784 TRERF1Q96PN7 1200 aa13.55□□□□□ -0.24
CSDE1-213ENST00000530784 ZIC5Q96T25 663 aa13.55□□□□□ -0.24
CSDE1-213ENST00000530784 HCN4Q9Y3Q4 1203 aa13.55□□□□□ -0.24
CSDE1-213ENST00000530784 A0A1W2PNR3 127 aa13.54□□□□□ -0.24
CSDE1-213ENST00000530784 POTEAQ6S8J7 498 aa13.54□□□□□ -0.24
CSDE1-213ENST00000530784 CHMP3Q9Y3E7 222 aa13.54□□□□□ -0.24
CSDE1-213ENST00000530784 LORP23490 312 aaPredicted RBP13.53□□□□□ -0.24
CSDE1-213ENST00000530784 BICDL1Q6ZP65 573 aa13.53□□□□□ -0.24
CSDE1-213ENST00000530784 HIRAP54198 1017 aaPredicted RBP13.52□□□□□ -0.25
CSDE1-213ENST00000530784 C2orf49Q9BVC5 232 aaPredicted RBP13.52□□□□□ -0.25
CSDE1-213ENST00000530784 NLRP8Q86W28 1048 aa13.51□□□□□ -0.25
CSDE1-213ENST00000530784 STAG2Q8N3U4 1231 aa13.51□□□□□ -0.25
CSDE1-213ENST00000530784 C7orf43Q8WVR3 580 aa13.51□□□□□ -0.25
CSDE1-213ENST00000530784 ZCCHC2Q9C0B9 1178 aaKnown RBP13.51□□□□□ -0.25
CSDE1-213ENST00000530784 NACADO15069 1562 aa13.5□□□□□ -0.25
CSDE1-213ENST00000530784 IGFBP4P22692 258 aa13.5□□□□□ -0.25
CSDE1-213ENST00000530784 KLRG1Q96E93 195 aa13.5□□□□□ -0.25
CSDE1-213ENST00000530784 CFHR5Q9BXR6 569 aa13.5□□□□□ -0.25
CSDE1-213ENST00000530784 PHACTR1Q9C0D0 580 aa13.5□□□□□ -0.25
CSDE1-213ENST00000530784 ACIN1Q9UKV3 1341 aaKnown RBP13.49□□□□□ -0.25
CSDE1-213ENST00000530784 WEE1P30291 646 aa13.49□□□□□ -0.25
CSDE1-213ENST00000530784 FAM69CQ0P6D2 419 aa13.49□□□□□ -0.25
CSDE1-213ENST00000530784 ZSCAN1Q8NBB4 408 aa13.49□□□□□ -0.25
CSDE1-213ENST00000530784 BNIP3LO60238 219 aa13.48□□□□□ -0.25
CSDE1-213ENST00000530784 TMEM164Q5U3C3 297 aa13.48□□□□□ -0.25
CSDE1-213ENST00000530784 C1orf53Q5VUE5 145 aa13.48□□□□□ -0.25
CSDE1-213ENST00000530784 ABHD17AQ96GS6 310 aa13.48□□□□□ -0.25
CSDE1-213ENST00000530784 MBIPQ9NS73 344 aa13.48□□□□□ -0.25
CSDE1-213ENST00000530784 NDFIP2Q9NV92 336 aa13.48□□□□□ -0.25
CSDE1-213ENST00000530784 GJA3Q9Y6H8 435 aa13.48□□□□□ -0.25
CSDE1-213ENST00000530784 SWI5Q1ZZU3 235 aa13.47□□□□□ -0.25
CSDE1-213ENST00000530784 FIGNL1Q6PIW4 674 aa13.47□□□□□ -0.25
CSDE1-213ENST00000530784 RHPN1Q8TCX5 695 aa13.47□□□□□ -0.25
CSDE1-213ENST00000530784 PHF24Q9UPV7 400 aa13.47□□□□□ -0.25
CSDE1-213ENST00000530784 PCDHGC4Q9Y5F7 938 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms