RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 ZDHHC1Q8WTX9 485 aa10.93□□□□□ -0.66
PCF11-202ENST00000528336 L3MBTL2Q969R5 705 aa10.93□□□□□ -0.66
PCF11-202ENST00000528336 GAS2L1Q99501 681 aaPredicted RBP10.93□□□□□ -0.66
PCF11-202ENST00000528336 SLAIN2Q9P270 581 aa10.93□□□□□ -0.66
PCF11-202ENST00000528336 CHMP3Q9Y3E7 222 aa10.93□□□□□ -0.66
PCF11-202ENST00000528336 WEE1P30291 646 aa10.92□□□□□ -0.66
PCF11-202ENST00000528336 NOS2P35228 1153 aa10.92□□□□□ -0.66
PCF11-202ENST00000528336 PSMA6P60900 246 aaKnown RBP10.92□□□□□ -0.66
PCF11-202ENST00000528336 TEAD4Q15561 434 aa10.92□□□□□ -0.66
PCF11-202ENST00000528336 SH3PXD2AQ5TCZ1 1133 aa10.92□□□□□ -0.66
PCF11-202ENST00000528336 CLP1Q92989 425 aaKnown RBP10.92□□□□□ -0.66
PCF11-202ENST00000528336 USTQ9Y2C2 406 aa10.92□□□□□ -0.66
PCF11-202ENST00000528336 SENP3-EIF4A1A0A087X0R7 540 aa10.91□□□□□ -0.66
PCF11-202ENST00000528336 IGFBP4P22692 258 aa10.91□□□□□ -0.66
PCF11-202ENST00000528336 HCN4Q9Y3Q4 1203 aa10.91□□□□□ -0.66
PCF11-202ENST00000528336 ATP2B4P23634 1241 aa10.9□□□□□ -0.66
PCF11-202ENST00000528336 CCDC155Q8N6L0 562 aa10.9□□□□□ -0.66
PCF11-202ENST00000528336 GPAMQ9HCL2 828 aa10.9□□□□□ -0.66
PCF11-202ENST00000528336 SLC35F4A4IF30 521 aa10.89□□□□□ -0.67
PCF11-202ENST00000528336 OCLNQ16625 522 aa10.89□□□□□ -0.67
PCF11-202ENST00000528336 RIPOR1Q6ZS17 1223 aa10.89□□□□□ -0.67
PCF11-202ENST00000528336 DYRK1BQ9Y463 629 aa10.89□□□□□ -0.67
PCF11-202ENST00000528336 EML1O00423 815 aa10.88□□□□□ -0.67
PCF11-202ENST00000528336 MSX1P28360 303 aa10.88□□□□□ -0.67
PCF11-202ENST00000528336 PDE4CQ08493 712 aa10.88□□□□□ -0.67
PCF11-202ENST00000528336 VTI1AQ96AJ9 217 aa10.88□□□□□ -0.67
PCF11-202ENST00000528336 NGLY1Q96IV0 654 aa10.88□□□□□ -0.67
PCF11-202ENST00000528336 C2orf49Q9BVC5 232 aaPredicted RBP10.88□□□□□ -0.67
PCF11-202ENST00000528336 CXXC1Q9P0U4 656 aaPredicted RBP10.88□□□□□ -0.67
PCF11-202ENST00000528336 A0A1B0GTH6 734 aa10.87□□□□□ -0.67
PCF11-202ENST00000528336 TXLNAP40222 546 aa10.87□□□□□ -0.67
PCF11-202ENST00000528336 VEGFBP49765 207 aa10.87□□□□□ -0.67
PCF11-202ENST00000528336 FKBP5Q13451 457 aaPredicted RBP10.87□□□□□ -0.67
PCF11-202ENST00000528336 NBPF1Q3BBV0 1214 aa10.87□□□□□ -0.67
PCF11-202ENST00000528336 PPFIA3O75145 1194 aa10.86□□□□□ -0.67
PCF11-202ENST00000528336 F11P03951 625 aa10.86□□□□□ -0.67
PCF11-202ENST00000528336 MKNK1Q9BUB5 465 aa10.86□□□□□ -0.67
PCF11-202ENST00000528336 FOXO3O43524 673 aa10.85□□□□□ -0.67
PCF11-202ENST00000528336 TATP17735 454 aaPredicted RBP10.85□□□□□ -0.67
PCF11-202ENST00000528336 STAG2Q8N3U4 1231 aa10.85□□□□□ -0.67
PCF11-202ENST00000528336 RUBCNLQ9H714 662 aa10.85□□□□□ -0.67
PCF11-202ENST00000528336 SCNN1AP37088 669 aa10.84□□□□□ -0.67
PCF11-202ENST00000528336 ARSJQ5FYB0 599 aaPredicted RBP10.84□□□□□ -0.67
PCF11-202ENST00000528336 BICDL1Q6ZP65 573 aa10.84□□□□□ -0.67
PCF11-202ENST00000528336 ALDH16A1Q8IZ83 802 aa10.84□□□□□ -0.67
PCF11-202ENST00000528336 PHACTR1Q9C0D0 580 aa10.84□□□□□ -0.67
PCF11-202ENST00000528336 NXF1Q9UBU9 619 aaKnown RBP10.84□□□□□ -0.67
PCF11-202ENST00000528336 SSFA2P28290 1259 aa10.83□□□□□ -0.68
PCF11-202ENST00000528336 CAPN12Q6ZSI9 719 aa10.83□□□□□ -0.68
PCF11-202ENST00000528336 CUEDC1Q9NWM3 386 aaPredicted RBP10.83□□□□□ -0.68
PCF11-202ENST00000528336 ATP4AP20648 1035 aa10.82□□□□□ -0.68
PCF11-202ENST00000528336 ITGA6P23229 1130 aa10.82□□□□□ -0.68
PCF11-202ENST00000528336 HIRAP54198 1017 aaPredicted RBP10.82□□□□□ -0.68
PCF11-202ENST00000528336 PGBD3Q8N328 593 aa10.82□□□□□ -0.68
PCF11-202ENST00000528336 ZDHHC3Q9NYG2 299 aa10.82□□□□□ -0.68
PCF11-202ENST00000528336 NAA30Q147X3 362 aaPredicted RBP10.81□□□□□ -0.68
PCF11-202ENST00000528336 PHLDB3Q6NSJ2 640 aa10.81□□□□□ -0.68
PCF11-202ENST00000528336 POTEAQ6S8J7 498 aa10.81□□□□□ -0.68
PCF11-202ENST00000528336 C1orf216Q8TAB5 229 aa10.81□□□□□ -0.68
PCF11-202ENST00000528336 RHPN1Q8TCX5 695 aa10.81□□□□□ -0.68
PCF11-202ENST00000528336 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.81□□□□□ -0.68
PCF11-202ENST00000528336 CDC14CA4D256 554 aa10.8□□□□□ -0.68
PCF11-202ENST00000528336 DBN1Q16643 649 aa10.8□□□□□ -0.68
PCF11-202ENST00000528336 C1orf53Q5VUE5 145 aa10.8□□□□□ -0.68
PCF11-202ENST00000528336 VWA5B2Q8N398 1253 aa10.8□□□□□ -0.68
PCF11-202ENST00000528336 A0A1W2PNR3 127 aa10.79□□□□□ -0.68
PCF11-202ENST00000528336 PDIA4P13667 645 aaKnown RBP10.79□□□□□ -0.68
PCF11-202ENST00000528336 ZIC5Q96T25 663 aa10.79□□□□□ -0.68
PCF11-202ENST00000528336 NEUROD4Q9HD90 331 aa10.79□□□□□ -0.68
PCF11-202ENST00000528336 SEPT3Q9UH03 358 aa10.79□□□□□ -0.68
PCF11-202ENST00000528336 TERTO14746 1132 aaKnown RBP10.78□□□□□ -0.68
PCF11-202ENST00000528336 B4GALNT3Q6L9W6 998 aa10.78□□□□□ -0.68
PCF11-202ENST00000528336 TRIM22Q8IYM9 498 aa10.78□□□□□ -0.68
PCF11-202ENST00000528336 KLRG1Q96E93 195 aa10.78□□□□□ -0.68
PCF11-202ENST00000528336 NUCKS1Q9H1E3 243 aaKnown RBP10.78□□□□□ -0.68
PCF11-202ENST00000528336 GJA3Q9Y6H8 435 aa10.78□□□□□ -0.68
PCF11-202ENST00000528336 H7C1W4 665 aa10.77□□□□□ -0.69
PCF11-202ENST00000528336 C7orf43Q8WVR3 580 aa10.77□□□□□ -0.69
PCF11-202ENST00000528336 QTRT2Q9H974 415 aaKnown RBP10.77□□□□□ -0.69
PCF11-202ENST00000528336 H3BM21 787 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 PTCD1O75127 700 aaKnown RBP10.76□□□□□ -0.69
PCF11-202ENST00000528336 RTN1Q16799 776 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 EFHC2Q5JST6 749 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 LRRC69Q6ZNQ3 347 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 HOMEZQ8IX15 550 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 ZNF837Q96EG3 531 aaPredicted RBP10.76□□□□□ -0.69
PCF11-202ENST00000528336 TRAIPQ9BWF2 469 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 SAP130Q9H0E3 1048 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 CRISPLD1Q9H336 500 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 KLK14Q9P0G3 267 aa10.76□□□□□ -0.69
PCF11-202ENST00000528336 SV2AQ7L0J3 742 aa10.75□□□□□ -0.69
PCF11-202ENST00000528336 SLC16A10Q8TF71 515 aa10.75□□□□□ -0.69
PCF11-202ENST00000528336 GTPBP3Q969Y2 492 aaKnown RBP10.75□□□□□ -0.69
PCF11-202ENST00000528336 COL26A1Q96A83 441 aa10.75□□□□□ -0.69
PCF11-202ENST00000528336 ZNF775Q96BV0 537 aaPredicted RBP10.75□□□□□ -0.69
PCF11-202ENST00000528336 THBS1P07996 1170 aa10.74□□□□□ -0.69
PCF11-202ENST00000528336 DGKZQ13574 1117 aa10.74□□□□□ -0.69
PCF11-202ENST00000528336 COX20Q5RI15 118 aa10.74□□□□□ -0.69
PCF11-202ENST00000528336 NPAS3Q8IXF0 933 aa10.74□□□□□ -0.69
PCF11-202ENST00000528336 ZNF280CQ8ND82 737 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms