RNA–Protein interactions for RNA: ENST00000527237.1

TRIM3-205, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 339 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-205ENST00000527237 SRP68Q9UHB9 627 aaKnown RBP24.03■■□□□ 1.44
TRIM3-205ENST00000527237 SOS1Q07889 1333 aaPredicted RBP24.03■■□□□ 1.44
TRIM3-205ENST00000527237 COL15A1P39059 1388 aa24.02■■□□□ 1.44
TRIM3-205ENST00000527237 PRAMEF22A3QJZ6 481 aa24■■□□□ 1.43
TRIM3-205ENST00000527237 GYS1P13807 737 aa24■■□□□ 1.43
TRIM3-205ENST00000527237 RFC4P35249 363 aa24■■□□□ 1.43
TRIM3-205ENST00000527237 FMNL2Q96PY5 1086 aa24■■□□□ 1.43
TRIM3-205ENST00000527237 MIS18AQ9NYP9 233 aa24■■□□□ 1.43
TRIM3-205ENST00000527237 NRXN2Q9P2S2 1712 aa24■■□□□ 1.43
TRIM3-205ENST00000527237 USP42Q9H9J4 1324 aaKnown RBP24■■□□□ 1.43
TRIM3-205ENST00000527237 WDR43Q15061 677 aaKnown RBP eCLIP23.99■■□□□ 1.43
TRIM3-205ENST00000527237 CCDC184Q52MB2 194 aa23.99■■□□□ 1.43
TRIM3-205ENST00000527237 PNNQ9H307 717 aaKnown RBP23.99■■□□□ 1.43
TRIM3-205ENST00000527237 RRP7AQ9Y3A4 280 aaKnown RBP23.99■■□□□ 1.43
TRIM3-205ENST00000527237 MMP10P09238 476 aa23.98■■□□□ 1.43
TRIM3-205ENST00000527237 ADAMTS8Q9UP79 889 aa23.98■■□□□ 1.43
TRIM3-205ENST00000527237 CANXP27824 592 aaKnown RBP23.97■■□□□ 1.43
TRIM3-205ENST00000527237 TMPOP42166 694 aaKnown RBP23.96■■□□□ 1.43
TRIM3-205ENST00000527237 GOLGB1Q14789 3259 aaKnown RBP23.96■■□□□ 1.43
TRIM3-205ENST00000527237 RIPK4P57078 832 aa23.95■■□□□ 1.42
TRIM3-205ENST00000527237 TAF7Q15545 349 aaPredicted RBP23.95■■□□□ 1.42
TRIM3-205ENST00000527237 C10orf71Q711Q0 1435 aa23.94■■□□□ 1.42
TRIM3-205ENST00000527237 ANKRD31Q8N7Z5 1873 aa23.94■■□□□ 1.42
TRIM3-205ENST00000527237 PIP4K2AP48426 406 aaPredicted RBP23.94■■□□□ 1.42
TRIM3-205ENST00000527237 FKBP8Q14318 412 aa23.94■■□□□ 1.42
TRIM3-205ENST00000527237 DLEC1Q9Y238 1755 aa23.93■■□□□ 1.42
TRIM3-205ENST00000527237 STARD3NLO95772 234 aa23.93■■□□□ 1.42
TRIM3-205ENST00000527237 USPL1Q5W0Q7 1092 aa23.93■■□□□ 1.42
TRIM3-205ENST00000527237 RUNDC1Q96C34 613 aa23.93■■□□□ 1.42
TRIM3-205ENST00000527237 USP16Q9Y5T5 823 aa23.93■■□□□ 1.42
TRIM3-205ENST00000527237 NUP98P52948 1817 aa23.92■■□□□ 1.42
TRIM3-205ENST00000527237 A1BGP04217 495 aa23.92■■□□□ 1.42
TRIM3-205ENST00000527237 NEUROD2Q15784 382 aa23.92■■□□□ 1.42
TRIM3-205ENST00000527237 NLGN1Q8N2Q7 840 aa23.92■■□□□ 1.42
TRIM3-205ENST00000527237 UTRNP46939 3433 aa23.92■■□□□ 1.42
TRIM3-205ENST00000527237 DDR1Q08345 913 aa23.91■■□□□ 1.42
TRIM3-205ENST00000527237 ZNF330Q9Y3S2 320 aaPredicted RBP23.91■■□□□ 1.42
TRIM3-205ENST00000527237 CACNA1SQ13698 1873 aa23.91■■□□□ 1.42
TRIM3-205ENST00000527237 PXDNLA1KZ92 1463 aa23.9■■□□□ 1.42
TRIM3-205ENST00000527237 EIF5P55010 431 aaKnown RBP23.9■■□□□ 1.42
TRIM3-205ENST00000527237 TEX13AQ9BXU3 409 aaPredicted RBP23.9■■□□□ 1.42
TRIM3-205ENST00000527237 BCL2L12Q9HB09 334 aa23.9■■□□□ 1.42
TRIM3-205ENST00000527237 CD2APQ9Y5K6 639 aa23.9■■□□□ 1.42
TRIM3-205ENST00000527237 ARFGEF1Q9Y6D6 1849 aa23.89■■□□□ 1.42
TRIM3-205ENST00000527237 PELP1Q8IZL8 1130 aaKnown RBP23.89■■□□□ 1.41
TRIM3-205ENST00000527237 NARFQ9UHQ1 456 aa23.89■■□□□ 1.41
TRIM3-205ENST00000527237 COL11A2P13942 1736 aaPredicted RBP23.88■■□□□ 1.41
TRIM3-205ENST00000527237 ZPR1O75312 459 aa23.88■■□□□ 1.41
TRIM3-205ENST00000527237 SNRPA1P09661 255 aaKnown RBP23.88■■□□□ 1.41
TRIM3-205ENST00000527237 WWC3Q9ULE0 1092 aa23.88■■□□□ 1.41
TRIM3-205ENST00000527237 TRIM35Q9UPQ4 493 aa23.88■■□□□ 1.41
TRIM3-205ENST00000527237 DCAF8L1A6NGE4 600 aa23.87■■□□□ 1.41
TRIM3-205ENST00000527237 YBX3P16989 372 aaKnown RBP eCLIP23.87■■□□□ 1.41
TRIM3-205ENST00000527237 IL6STP40189 918 aaPredicted RBP23.86■■□□□ 1.41
TRIM3-205ENST00000527237 EIF4A1P60842 406 aaKnown RBP23.86■■□□□ 1.41
TRIM3-205ENST00000527237 PNISRQ8TF01 805 aaKnown RBP23.86■■□□□ 1.41
TRIM3-205ENST00000527237 PARP3Q9Y6F1 533 aa23.86■■□□□ 1.41
TRIM3-205ENST00000527237 ANP32CO43423 234 aa23.85■■□□□ 1.41
TRIM3-205ENST00000527237 LMOD3Q0VAK6 560 aa23.85■■□□□ 1.41
TRIM3-205ENST00000527237 GPR162Q16538 588 aa23.85■■□□□ 1.41
TRIM3-205ENST00000527237 TBC1D2BQ9UPU7 963 aa23.85■■□□□ 1.41
TRIM3-205ENST00000527237 ANKRD36CQ5JPF3 1778 aa23.84■■□□□ 1.41
TRIM3-205ENST00000527237 NBPF26B4DH59 902 aa23.84■■□□□ 1.41
TRIM3-205ENST00000527237 POLRMTO00411 1230 aaKnown RBP23.84■■□□□ 1.41
TRIM3-205ENST00000527237 NBPF10Q6P3W6 841 aaKnown RBP23.84■■□□□ 1.41
TRIM3-205ENST00000527237 NBPF15Q8N660 670 aa23.84■■□□□ 1.41
TRIM3-205ENST00000527237 TSPYL4Q9UJ04 414 aa23.84■■□□□ 1.41
TRIM3-205ENST00000527237 TM4SF1P30408 202 aa23.83■■□□□ 1.41
TRIM3-205ENST00000527237 NFIXQ14938 502 aa23.83■■□□□ 1.41
TRIM3-205ENST00000527237 GIGYF1O75420 1035 aaPredicted RBP23.82■■□□□ 1.4
TRIM3-205ENST00000527237 A0A087WZG4 1122 aa23.81■■□□□ 1.4
TRIM3-205ENST00000527237 SENP3-EIF4A1A0A087X0R7 540 aa23.81■■□□□ 1.4
TRIM3-205ENST00000527237 APAF1O14727 1248 aa23.81■■□□□ 1.4
TRIM3-205ENST00000527237 CARMIL3Q8ND23 1372 aa23.8■■□□□ 1.4
TRIM3-205ENST00000527237 CAMTA2O94983 1202 aa23.8■■□□□ 1.4
TRIM3-205ENST00000527237 MRS2Q9HD23 443 aa23.8■■□□□ 1.4
TRIM3-205ENST00000527237 TBC1D9BQ66K14 1250 aa23.79■■□□□ 1.4
TRIM3-205ENST00000527237 BICDL1Q6ZP65 573 aa23.79■■□□□ 1.4
TRIM3-205ENST00000527237 DZIP3Q86Y13 1208 aaKnown RBP23.79■■□□□ 1.4
TRIM3-205ENST00000527237 YY1P25490 414 aa23.78■■□□□ 1.4
TRIM3-205ENST00000527237 KRT24Q2M2I5 525 aa23.77■■□□□ 1.4
TRIM3-205ENST00000527237 LAS1LQ9Y4W2 734 aaKnown RBP23.77■■□□□ 1.4
TRIM3-205ENST00000527237 ARFGEF2Q9Y6D5 1785 aa23.77■■□□□ 1.4
TRIM3-205ENST00000527237 A0A0G2JLW4 131 aa23.76■■□□□ 1.39
TRIM3-205ENST00000527237 TNRC6CQ9HCJ0 1690 aaKnown RBP23.76■■□□□ 1.39
TRIM3-205ENST00000527237 DPEP1P16444 411 aa23.75■■□□□ 1.39
TRIM3-205ENST00000527237 CCDC88AQ3V6T2 1871 aa23.75■■□□□ 1.39
TRIM3-205ENST00000527237 CHL1O00533 1208 aa23.74■■□□□ 1.39
TRIM3-205ENST00000527237 SERPINB2P05120 415 aa23.74■■□□□ 1.39
TRIM3-205ENST00000527237 BABAM1Q9NWV8 329 aa23.74■■□□□ 1.39
TRIM3-205ENST00000527237 SBF1O95248 1867 aa23.73■■□□□ 1.39
TRIM3-205ENST00000527237 NPM2Q86SE8 214 aaKnown RBP23.73■■□□□ 1.39
TRIM3-205ENST00000527237 NGEFQ8N5V2 710 aa23.73■■□□□ 1.39
TRIM3-205ENST00000527237 MYL6BP14649 208 aa23.72■■□□□ 1.39
TRIM3-205ENST00000527237 CHRNA5P30532 468 aa23.72■■□□□ 1.39
TRIM3-205ENST00000527237 TGFB2P61812 414 aa23.72■■□□□ 1.39
TRIM3-205ENST00000527237 KCNA3P22001 575 aa23.71■■□□□ 1.39
TRIM3-205ENST00000527237 CCDC24Q8N4L8 307 aa23.71■■□□□ 1.39
TRIM3-205ENST00000527237 ANXA1P04083 346 aa23.7■■□□□ 1.38
TRIM3-205ENST00000527237 EIF2S2P20042 333 aaKnown RBP23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms