RNA–Protein interactions for RNA: ENST00000526280.1

SMPD1-202, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,344 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-202ENST00000526280 PDGFDQ9GZP0 370 aaPredicted RBP16.84■□□□□ 0.29
SMPD1-202ENST00000526280 CCDC87Q9NVE4 849 aa16.84■□□□□ 0.29
SMPD1-202ENST00000526280 USP16Q9Y5T5 823 aa16.84■□□□□ 0.29
SMPD1-202ENST00000526280 QSER1Q2KHR3 1735 aa16.84■□□□□ 0.29
SMPD1-202ENST00000526280 ZNF521Q96K83 1311 aa16.83■□□□□ 0.29
SMPD1-202ENST00000526280 TUBGCP6Q96RT7 1819 aa16.83■□□□□ 0.29
SMPD1-202ENST00000526280 RPS6KA4O75676 772 aa16.83■□□□□ 0.28
SMPD1-202ENST00000526280 SSFA2P28290 1259 aa16.83■□□□□ 0.28
SMPD1-202ENST00000526280 FLAD1Q8NFF5 587 aa16.83■□□□□ 0.28
SMPD1-202ENST00000526280 RTCBQ9Y3I0 505 aaKnown RBP16.83■□□□□ 0.28
SMPD1-202ENST00000526280 UBR3Q6ZT12 1888 aa16.83■□□□□ 0.28
SMPD1-202ENST00000526280 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.82■□□□□ 0.28
SMPD1-202ENST00000526280 SMIM5Q71RC9 77 aa16.82■□□□□ 0.28
SMPD1-202ENST00000526280 COL23A1Q86Y22 540 aaPredicted RBP16.82■□□□□ 0.28
SMPD1-202ENST00000526280 ZBTB1Q9Y2K1 713 aa16.81■□□□□ 0.28
SMPD1-202ENST00000526280 CASZ1Q86V15 1759 aa16.8■□□□□ 0.28
SMPD1-202ENST00000526280 PHF14O94880 888 aa16.8■□□□□ 0.28
SMPD1-202ENST00000526280 A1BGP04217 495 aa16.8■□□□□ 0.28
SMPD1-202ENST00000526280 ADRA2BP18089 450 aa16.8■□□□□ 0.28
SMPD1-202ENST00000526280 KRT24Q2M2I5 525 aa16.8■□□□□ 0.28
SMPD1-202ENST00000526280 TRAPPC3LQ5T215 181 aa16.8■□□□□ 0.28
SMPD1-202ENST00000526280 TSR2Q969E8 191 aaKnown RBP16.79■□□□□ 0.28
SMPD1-202ENST00000526280 SPINK5Q9NQ38 1064 aaPredicted RBP16.79■□□□□ 0.28
SMPD1-202ENST00000526280 SOS1Q07889 1333 aaPredicted RBP16.79■□□□□ 0.28
SMPD1-202ENST00000526280 MSH5O43196 834 aa16.78■□□□□ 0.28
SMPD1-202ENST00000526280 CANXP27824 592 aaKnown RBP16.78■□□□□ 0.28
SMPD1-202ENST00000526280 SLC16A10Q8TF71 515 aa16.78■□□□□ 0.28
SMPD1-202ENST00000526280 ARHGEF1Q92888 912 aaKnown RBP16.78■□□□□ 0.28
SMPD1-202ENST00000526280 HOXB7P09629 217 aa16.77■□□□□ 0.28
SMPD1-202ENST00000526280 EIF5P55010 431 aaKnown RBP16.77■□□□□ 0.28
SMPD1-202ENST00000526280 LAMB4A4D0S4 1761 aa16.77■□□□□ 0.27
SMPD1-202ENST00000526280 NBPF26B4DH59 902 aa16.76■□□□□ 0.27
SMPD1-202ENST00000526280 IL6STP40189 918 aaPredicted RBP16.76■□□□□ 0.27
SMPD1-202ENST00000526280 GOLGA2Q08379 1002 aa16.76■□□□□ 0.27
SMPD1-202ENST00000526280 DUSP27Q5VZP5 1158 aa16.76■□□□□ 0.27
SMPD1-202ENST00000526280 NBPF10Q6P3W6 841 aaKnown RBP16.76■□□□□ 0.27
SMPD1-202ENST00000526280 NBPF15Q8N660 670 aa16.76■□□□□ 0.27
SMPD1-202ENST00000526280 C8orf58Q8NAV2 365 aa16.76■□□□□ 0.27
SMPD1-202ENST00000526280 MYH16Q9H6N6 1097 aa16.76■□□□□ 0.27
SMPD1-202ENST00000526280 FANCIQ9NVI1 1328 aa16.76■□□□□ 0.27
SMPD1-202ENST00000526280 ZBTB7AO95365 584 aa16.75■□□□□ 0.27
SMPD1-202ENST00000526280 EIF2S2P20042 333 aaKnown RBP16.75■□□□□ 0.27
SMPD1-202ENST00000526280 RFC4P35249 363 aa16.75■□□□□ 0.27
SMPD1-202ENST00000526280 PIP4K2AP48426 406 aaPredicted RBP16.75■□□□□ 0.27
SMPD1-202ENST00000526280 MTFR1LQ9H019 292 aa16.75■□□□□ 0.27
SMPD1-202ENST00000526280 COL15A1P39059 1388 aa16.75■□□□□ 0.27
SMPD1-202ENST00000526280 LRP5O75197 1615 aa16.75■□□□□ 0.27
SMPD1-202ENST00000526280 HNRNPUQ00839 825 aaKnown RBP eCLIP16.74■□□□□ 0.27
SMPD1-202ENST00000526280 ERBB4Q15303 1308 aa16.74■□□□□ 0.27
SMPD1-202ENST00000526280 A0A087WZG4 1122 aa16.73■□□□□ 0.27
SMPD1-202ENST00000526280 E9PSI1 815 aa16.73■□□□□ 0.27
SMPD1-202ENST00000526280 ELL2O00472 640 aaPredicted RBP16.73■□□□□ 0.27
SMPD1-202ENST00000526280 TSPYL6Q8N831 410 aa16.73■□□□□ 0.27
SMPD1-202ENST00000526280 SPON1Q9HCB6 807 aa16.73■□□□□ 0.27
SMPD1-202ENST00000526280 ATF5Q9Y2D1 282 aaPredicted RBP16.73■□□□□ 0.27
SMPD1-202ENST00000526280 SLFN5Q08AF3 891 aa16.72■□□□□ 0.27
SMPD1-202ENST00000526280 PDIA6Q15084 440 aa16.72■□□□□ 0.27
SMPD1-202ENST00000526280 HDGFL1Q5TGJ6 251 aa16.72■□□□□ 0.27
SMPD1-202ENST00000526280 NECTIN2Q92692 538 aa16.72■□□□□ 0.27
SMPD1-202ENST00000526280 NARFQ9UHQ1 456 aa16.72■□□□□ 0.27
SMPD1-202ENST00000526280 ZNF330Q9Y3S2 320 aaPredicted RBP16.72■□□□□ 0.27
SMPD1-202ENST00000526280 USP42Q9H9J4 1324 aaKnown RBP16.72■□□□□ 0.27
SMPD1-202ENST00000526280 ZPR1O75312 459 aa16.71■□□□□ 0.27
SMPD1-202ENST00000526280 GYS1P13807 737 aa16.71■□□□□ 0.27
SMPD1-202ENST00000526280 NPM2Q86SE8 214 aaKnown RBP16.71■□□□□ 0.27
SMPD1-202ENST00000526280 CDCA7LQ96GN5 454 aa16.71■□□□□ 0.27
SMPD1-202ENST00000526280 SRP68Q9UHB9 627 aaKnown RBP16.71■□□□□ 0.27
SMPD1-202ENST00000526280 C4AP0C0L4 1744 aa16.71■□□□□ 0.27
SMPD1-202ENST00000526280 MYL6BP14649 208 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 EXOSC9Q06265 439 aaKnown RBP16.7■□□□□ 0.26
SMPD1-202ENST00000526280 TWISTNBQ3B726 338 aaPredicted RBP16.7■□□□□ 0.26
SMPD1-202ENST00000526280 MSL1Q68DK7 614 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 LRP10Q7Z4F1 713 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 TRMT2AQ8IZ69 625 aaKnown RBP16.7■□□□□ 0.26
SMPD1-202ENST00000526280 SGIP1Q9BQI5 828 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 TBC1D2BQ9UPU7 963 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 PTGER2P43116 358 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 PROSER3Q2NL68 480 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 USPL1Q5W0Q7 1092 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 NLGN1Q8N2Q7 840 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 CHMP4AQ9BY43 222 aa16.7■□□□□ 0.26
SMPD1-202ENST00000526280 DDX21Q9NR30 783 aaKnown RBP eCLIP16.7■□□□□ 0.26
SMPD1-202ENST00000526280 VAMP4O75379 141 aa16.69■□□□□ 0.26
SMPD1-202ENST00000526280 ANXA1P04083 346 aa16.69■□□□□ 0.26
SMPD1-202ENST00000526280 COL24A1Q17RW2 1714 aa16.69■□□□□ 0.26
SMPD1-202ENST00000526280 DZIP3Q86Y13 1208 aaKnown RBP16.69■□□□□ 0.26
SMPD1-202ENST00000526280 ARXQ96QS3 562 aa16.69■□□□□ 0.26
SMPD1-202ENST00000526280 CHPF2Q9P2E5 772 aa16.69■□□□□ 0.26
SMPD1-202ENST00000526280 DBF4Q9UBU7 674 aaPredicted RBP16.69■□□□□ 0.26
SMPD1-202ENST00000526280 CAMTA2O94983 1202 aa16.68■□□□□ 0.26
SMPD1-202ENST00000526280 FKBP8Q14318 412 aa16.68■□□□□ 0.26
SMPD1-202ENST00000526280 CCDC30Q5VVM6 783 aa16.68■□□□□ 0.26
SMPD1-202ENST00000526280 BCL2L12Q9HB09 334 aa16.68■□□□□ 0.26
SMPD1-202ENST00000526280 ZBED9Q6R2W3 1325 aa16.67■□□□□ 0.26
SMPD1-202ENST00000526280 POLD1P28340 1107 aa16.66■□□□□ 0.26
SMPD1-202ENST00000526280 TTLL7Q6ZT98 887 aa16.66■□□□□ 0.26
SMPD1-202ENST00000526280 HYPKQ9NX55 129 aa16.66■□□□□ 0.26
SMPD1-202ENST00000526280 ERVV-1B6SEH8 477 aa16.65■□□□□ 0.26
SMPD1-202ENST00000526280 RGL2O15211 777 aa16.65■□□□□ 0.26
SMPD1-202ENST00000526280 TM4SF1P30408 202 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms