RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 KRT24Q2M2I5 525 aa19.87■□□□□ 0.77
LSM1-203ENST00000520755 AK7Q96M32 723 aa19.87■□□□□ 0.77
LSM1-203ENST00000520755 PRAMEF22A3QJZ6 481 aa19.86■□□□□ 0.77
LSM1-203ENST00000520755 PSDA5PKW4 1024 aaPredicted RBP19.86■□□□□ 0.77
LSM1-203ENST00000520755 AKT1S1Q96B36 256 aa19.86■□□□□ 0.77
LSM1-203ENST00000520755 CACNA1FO60840 1977 aa19.86■□□□□ 0.77
LSM1-203ENST00000520755 SNRPA1P09661 255 aaKnown RBP19.85■□□□□ 0.77
LSM1-203ENST00000520755 TFCP2L1Q9NZI6 479 aa19.85■□□□□ 0.77
LSM1-203ENST00000520755 CYP19A1P11511 503 aaPredicted RBP19.84■□□□□ 0.77
LSM1-203ENST00000520755 CRKLP46109 303 aaKnown RBP19.84■□□□□ 0.77
LSM1-203ENST00000520755 EXOSC9Q06265 439 aaKnown RBP19.84■□□□□ 0.77
LSM1-203ENST00000520755 TEX13AQ9BXU3 409 aaPredicted RBP19.84■□□□□ 0.77
LSM1-203ENST00000520755 CNTNAP4Q9C0A0 1308 aa19.83■□□□□ 0.77
LSM1-203ENST00000520755 GNPATO15228 680 aa19.83■□□□□ 0.77
LSM1-203ENST00000520755 STARD3NLO95772 234 aa19.83■□□□□ 0.77
LSM1-203ENST00000520755 GIGYF1O75420 1035 aaPredicted RBP19.82■□□□□ 0.76
LSM1-203ENST00000520755 TSPYL6Q8N831 410 aa19.82■□□□□ 0.76
LSM1-203ENST00000520755 C8orf58Q8NAV2 365 aa19.82■□□□□ 0.76
LSM1-203ENST00000520755 USP16Q9Y5T5 823 aa19.82■□□□□ 0.76
LSM1-203ENST00000520755 PHF14O94880 888 aa19.81■□□□□ 0.76
LSM1-203ENST00000520755 RC3H1Q5TC82 1133 aaKnown RBP19.81■□□□□ 0.76
LSM1-203ENST00000520755 CCDC87Q9NVE4 849 aa19.81■□□□□ 0.76
LSM1-203ENST00000520755 CASZ1Q86V15 1759 aa19.8■□□□□ 0.76
LSM1-203ENST00000520755 INTS5Q6P9B9 1019 aaKnown RBP19.8■□□□□ 0.76
LSM1-203ENST00000520755 SMIM5Q71RC9 77 aa19.8■□□□□ 0.76
LSM1-203ENST00000520755 C4AP0C0L4 1744 aa19.79■□□□□ 0.76
LSM1-203ENST00000520755 CANXP27824 592 aaKnown RBP19.79■□□□□ 0.76
LSM1-203ENST00000520755 AMIGO3Q86WK7 504 aa19.79■□□□□ 0.76
LSM1-203ENST00000520755 ZBTB1Q9Y2K1 713 aa19.79■□□□□ 0.76
LSM1-203ENST00000520755 RTCBQ9Y3I0 505 aaKnown RBP19.79■□□□□ 0.76
LSM1-203ENST00000520755 PNPLA7Q6ZV29 1317 aa19.78■□□□□ 0.76
LSM1-203ENST00000520755 ELL2O00472 640 aaPredicted RBP19.78■□□□□ 0.76
LSM1-203ENST00000520755 MSH5O43196 834 aa19.78■□□□□ 0.76
LSM1-203ENST00000520755 A1BGP04217 495 aa19.78■□□□□ 0.76
LSM1-203ENST00000520755 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.77■□□□□ 0.76
LSM1-203ENST00000520755 RPS6KA4O75676 772 aa19.77■□□□□ 0.76
LSM1-203ENST00000520755 EIF2S2P20042 333 aaKnown RBP19.77■□□□□ 0.76
LSM1-203ENST00000520755 PIP4K2AP48426 406 aaPredicted RBP19.77■□□□□ 0.76
LSM1-203ENST00000520755 NECTIN2Q92692 538 aa19.77■□□□□ 0.76
LSM1-203ENST00000520755 PDGFDQ9GZP0 370 aaPredicted RBP19.77■□□□□ 0.76
LSM1-203ENST00000520755 SSFA2P28290 1259 aa19.76■□□□□ 0.75
LSM1-203ENST00000520755 TWISTNBQ3B726 338 aaPredicted RBP19.76■□□□□ 0.75
LSM1-203ENST00000520755 COL23A1Q86Y22 540 aaPredicted RBP19.76■□□□□ 0.75
LSM1-203ENST00000520755 ZNF330Q9Y3S2 320 aaPredicted RBP19.76■□□□□ 0.75
LSM1-203ENST00000520755 SOS1Q07889 1333 aaPredicted RBP19.76■□□□□ 0.75
LSM1-203ENST00000520755 VAMP4O75379 141 aa19.75■□□□□ 0.75
LSM1-203ENST00000520755 FLAD1Q8NFF5 587 aa19.75■□□□□ 0.75
LSM1-203ENST00000520755 HOXB7P09629 217 aa19.74■□□□□ 0.75
LSM1-203ENST00000520755 TRAPPC3LQ5T215 181 aa19.74■□□□□ 0.75
LSM1-203ENST00000520755 COL15A1P39059 1388 aa19.73■□□□□ 0.75
LSM1-203ENST00000520755 N4BP2Q86UW6 1770 aaPredicted RBP19.73■□□□□ 0.75
LSM1-203ENST00000520755 HDGFL1Q5TGJ6 251 aa19.73■□□□□ 0.75
LSM1-203ENST00000520755 NBPF26B4DH59 902 aa19.72■□□□□ 0.75
LSM1-203ENST00000520755 CT47B1P0C2W7 299 aaPredicted RBP19.72■□□□□ 0.75
LSM1-203ENST00000520755 ADRA2BP18089 450 aa19.72■□□□□ 0.75
LSM1-203ENST00000520755 IL6STP40189 918 aaPredicted RBP19.72■□□□□ 0.75
LSM1-203ENST00000520755 NBPF10Q6P3W6 841 aaKnown RBP19.72■□□□□ 0.75
LSM1-203ENST00000520755 NPM2Q86SE8 214 aaKnown RBP19.72■□□□□ 0.75
LSM1-203ENST00000520755 NBPF15Q8N660 670 aa19.72■□□□□ 0.75
LSM1-203ENST00000520755 ARHGEF1Q92888 912 aaKnown RBP19.72■□□□□ 0.75
LSM1-203ENST00000520755 BCORQ6W2J9 1755 aa19.71■□□□□ 0.75
LSM1-203ENST00000520755 MYL6BP14649 208 aa19.71■□□□□ 0.75
LSM1-203ENST00000520755 RFC4P35249 363 aa19.71■□□□□ 0.75
LSM1-203ENST00000520755 EIF5P55010 431 aaKnown RBP19.71■□□□□ 0.75
LSM1-203ENST00000520755 ARFGEF2Q9Y6D5 1785 aa19.7■□□□□ 0.74
LSM1-203ENST00000520755 ZBTB7AO95365 584 aa19.7■□□□□ 0.74
LSM1-203ENST00000520755 ARXQ96QS3 562 aa19.7■□□□□ 0.74
LSM1-203ENST00000520755 ERBB4Q15303 1308 aa19.7■□□□□ 0.74
LSM1-203ENST00000520755 ANXA1P04083 346 aa19.69■□□□□ 0.74
LSM1-203ENST00000520755 CHPF2Q9P2E5 772 aa19.69■□□□□ 0.74
LSM1-203ENST00000520755 SCN7AQ01118 1682 aa19.68■□□□□ 0.74
LSM1-203ENST00000520755 A0A087WZG4 1122 aa19.68■□□□□ 0.74
LSM1-203ENST00000520755 TCERG1O14776 1098 aaKnown RBP19.68■□□□□ 0.74
LSM1-203ENST00000520755 RARSP54136 660 aaKnown RBP19.68■□□□□ 0.74
LSM1-203ENST00000520755 PROSER3Q2NL68 480 aa19.68■□□□□ 0.74
LSM1-203ENST00000520755 SSH1Q8WYL5 1049 aa19.68■□□□□ 0.74
LSM1-203ENST00000520755 SRP68Q9UHB9 627 aaKnown RBP19.68■□□□□ 0.74
LSM1-203ENST00000520755 PDIA6Q15084 440 aa19.67■□□□□ 0.74
LSM1-203ENST00000520755 MSL1Q68DK7 614 aa19.67■□□□□ 0.74
LSM1-203ENST00000520755 SLC16A10Q8TF71 515 aa19.67■□□□□ 0.74
LSM1-203ENST00000520755 BCL2L13Q9BXK5 485 aa19.67■□□□□ 0.74
LSM1-203ENST00000520755 RCAN3Q9UKA8 241 aa19.67■□□□□ 0.74
LSM1-203ENST00000520755 TBC1D2BQ9UPU7 963 aa19.67■□□□□ 0.74
LSM1-203ENST00000520755 ATF5Q9Y2D1 282 aaPredicted RBP19.67■□□□□ 0.74
LSM1-203ENST00000520755 ANKRD36CQ5JPF3 1778 aa19.66■□□□□ 0.74
LSM1-203ENST00000520755 ZPR1O75312 459 aa19.66■□□□□ 0.74
LSM1-203ENST00000520755 CCDC30Q5VVM6 783 aa19.66■□□□□ 0.74
LSM1-203ENST00000520755 ZNF428Q96B54 188 aa19.66■□□□□ 0.74
LSM1-203ENST00000520755 MTFR1LQ9H019 292 aa19.66■□□□□ 0.74
LSM1-203ENST00000520755 DDX21Q9NR30 783 aaKnown RBP eCLIP19.66■□□□□ 0.74
LSM1-203ENST00000520755 DBF4Q9UBU7 674 aaPredicted RBP19.66■□□□□ 0.74
LSM1-203ENST00000520755 USP42Q9H9J4 1324 aaKnown RBP19.66■□□□□ 0.74
LSM1-203ENST00000520755 COL24A1Q17RW2 1714 aa19.65■□□□□ 0.74
LSM1-203ENST00000520755 CENPBP07199 599 aaPredicted RBP19.65■□□□□ 0.74
LSM1-203ENST00000520755 ALDH1L2Q3SY69 923 aa19.65■□□□□ 0.74
LSM1-203ENST00000520755 USPL1Q5W0Q7 1092 aa19.65■□□□□ 0.74
LSM1-203ENST00000520755 LRP10Q7Z4F1 713 aa19.65■□□□□ 0.74
LSM1-203ENST00000520755 DZIP3Q86Y13 1208 aaKnown RBP19.65■□□□□ 0.74
LSM1-203ENST00000520755 CHMP4AQ9BY43 222 aa19.65■□□□□ 0.74
LSM1-203ENST00000520755 NARFQ9UHQ1 456 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms