RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 VIRMAQ69YN4 1812 aaKnown RBP15.22■□□□□ 0.03
VCAN-212ENST00000515397 SOS1Q07889 1333 aaPredicted RBP15.21■□□□□ 0.03
VCAN-212ENST00000515397 HTATSF1O43719 755 aaKnown RBP15.21■□□□□ 0.03
VCAN-212ENST00000515397 STARD3NLO95772 234 aa15.21■□□□□ 0.03
VCAN-212ENST00000515397 TAF7Q15545 349 aaPredicted RBP15.21■□□□□ 0.03
VCAN-212ENST00000515397 ADAMTS8Q9UP79 889 aa15.21■□□□□ 0.03
VCAN-212ENST00000515397 HEG1Q9ULI3 1381 aa15.21■□□□□ 0.02
VCAN-212ENST00000515397 TJP1Q07157 1748 aa15.2■□□□□ 0.02
VCAN-212ENST00000515397 SENP3-EIF4A1A0A087X0R7 540 aa15.2■□□□□ 0.02
VCAN-212ENST00000515397 ZPR1O75312 459 aa15.2■□□□□ 0.02
VCAN-212ENST00000515397 YBX3P16989 372 aaKnown RBP eCLIP15.2■□□□□ 0.02
VCAN-212ENST00000515397 YY1P25490 414 aa15.2■□□□□ 0.02
VCAN-212ENST00000515397 RIPK4P57078 832 aa15.2■□□□□ 0.02
VCAN-212ENST00000515397 CCDC184Q52MB2 194 aa15.2■□□□□ 0.02
VCAN-212ENST00000515397 COL5A3P25940 1745 aaPredicted RBP15.2■□□□□ 0.02
VCAN-212ENST00000515397 USP42Q9H9J4 1324 aaKnown RBP15.19■□□□□ 0.02
VCAN-212ENST00000515397 WDR43Q15061 677 aaKnown RBP eCLIP15.19■□□□□ 0.02
VCAN-212ENST00000515397 PNNQ9H307 717 aaKnown RBP15.19■□□□□ 0.02
VCAN-212ENST00000515397 CD2APQ9Y5K6 639 aa15.19■□□□□ 0.02
VCAN-212ENST00000515397 COL24A1Q17RW2 1714 aa15.19■□□□□ 0.02
VCAN-212ENST00000515397 TMPOP42166 694 aaKnown RBP15.18■□□□□ 0.02
VCAN-212ENST00000515397 DDR1Q08345 913 aa15.18■□□□□ 0.02
VCAN-212ENST00000515397 BCL2L12Q9HB09 334 aa15.18■□□□□ 0.02
VCAN-212ENST00000515397 TBC1D2BQ9UPU7 963 aa15.18■□□□□ 0.02
VCAN-212ENST00000515397 PARP3Q9Y6F1 533 aa15.18■□□□□ 0.02
VCAN-212ENST00000515397 ZNF831Q5JPB2 1677 aa15.18■□□□□ 0.02
VCAN-212ENST00000515397 A0A0G2JLW4 131 aa15.17■□□□□ 0.02
VCAN-212ENST00000515397 EIF5P55010 431 aaKnown RBP15.17■□□□□ 0.02
VCAN-212ENST00000515397 BICDL1Q6ZP65 573 aa15.17■□□□□ 0.02
VCAN-212ENST00000515397 TEX13AQ9BXU3 409 aaPredicted RBP15.17■□□□□ 0.02
VCAN-212ENST00000515397 GOLGB1Q14789 3259 aaKnown RBP15.17■□□□□ 0.02
VCAN-212ENST00000515397 COL15A1P39059 1388 aa15.16■□□□□ 0.02
VCAN-212ENST00000515397 SNRPA1P09661 255 aaKnown RBP15.16■□□□□ 0.02
VCAN-212ENST00000515397 NARFQ9UHQ1 456 aa15.16■□□□□ 0.02
VCAN-212ENST00000515397 TM4SF1P30408 202 aa15.15■□□□□ 0.02
VCAN-212ENST00000515397 NFIXQ14938 502 aa15.15■□□□□ 0.02
VCAN-212ENST00000515397 RUNDC1Q96C34 613 aa15.15■□□□□ 0.02
VCAN-212ENST00000515397 SIPA1L3O60292 1781 aaPredicted RBP15.15■□□□□ 0.02
VCAN-212ENST00000515397 NGEFQ8N5V2 710 aa15.14■□□□□ 0.01
VCAN-212ENST00000515397 LAS1LQ9Y4W2 734 aaKnown RBP15.14■□□□□ 0.01
VCAN-212ENST00000515397 UBR2Q8IWV8 1755 aa15.13■□□□□ 0.01
VCAN-212ENST00000515397 NBPF26B4DH59 902 aa15.13■□□□□ 0.01
VCAN-212ENST00000515397 POLRMTO00411 1230 aaKnown RBP15.13■□□□□ 0.01
VCAN-212ENST00000515397 DPEP1P16444 411 aa15.13■□□□□ 0.01
VCAN-212ENST00000515397 EIF4A1P60842 406 aaKnown RBP15.13■□□□□ 0.01
VCAN-212ENST00000515397 NBPF10Q6P3W6 841 aaKnown RBP15.13■□□□□ 0.01
VCAN-212ENST00000515397 CCDC24Q8N4L8 307 aa15.13■□□□□ 0.01
VCAN-212ENST00000515397 NBPF15Q8N660 670 aa15.13■□□□□ 0.01
VCAN-212ENST00000515397 CICQ96RK0 1608 aaPredicted RBP15.13■□□□□ 0.01
VCAN-212ENST00000515397 DLG5Q8TDM6 1919 aa15.12■□□□□ 0.01
VCAN-212ENST00000515397 IL6STP40189 918 aaPredicted RBP15.12■□□□□ 0.01
VCAN-212ENST00000515397 TBC1D9BQ66K14 1250 aa15.12■□□□□ 0.01
VCAN-212ENST00000515397 TSPYL4Q9UJ04 414 aa15.12■□□□□ 0.01
VCAN-212ENST00000515397 TRIM35Q9UPQ4 493 aa15.12■□□□□ 0.01
VCAN-212ENST00000515397 C4AP0C0L4 1744 aa15.12■□□□□ 0.01
VCAN-212ENST00000515397 A0A087WZG4 1122 aa15.11■□□□□ 0.01
VCAN-212ENST00000515397 APAF1O14727 1248 aa15.11■□□□□ 0.01
VCAN-212ENST00000515397 GIGYF1O75420 1035 aaPredicted RBP15.11■□□□□ 0.01
VCAN-212ENST00000515397 CHRNA5P30532 468 aa15.11■□□□□ 0.01
VCAN-212ENST00000515397 NPM2Q86SE8 214 aaKnown RBP15.11■□□□□ 0.01
VCAN-212ENST00000515397 DZIP3Q86Y13 1208 aaKnown RBP15.11■□□□□ 0.01
VCAN-212ENST00000515397 PNISRQ8TF01 805 aaKnown RBP15.11■□□□□ 0.01
VCAN-212ENST00000515397 CAMTA2O94983 1202 aa15.1■□□□□ 0.01
VCAN-212ENST00000515397 SERPINB2P05120 415 aa15.1■□□□□ 0.01
VCAN-212ENST00000515397 GRIN3BO60391 1043 aa15.09■□□□□ 0.01
VCAN-212ENST00000515397 MYL6BP14649 208 aa15.09■□□□□ 0.01
VCAN-212ENST00000515397 EIF2S2P20042 333 aaKnown RBP15.09■□□□□ 0.01
VCAN-212ENST00000515397 KCNA3P22001 575 aa15.09■□□□□ 0.01
VCAN-212ENST00000515397 TGFB2P61812 414 aa15.09■□□□□ 0.01
VCAN-212ENST00000515397 KRT24Q2M2I5 525 aa15.09■□□□□ 0.01
VCAN-212ENST00000515397 NECTIN2Q92692 538 aa15.09■□□□□ 0.01
VCAN-212ENST00000515397 BCS1LQ9Y276 419 aa15.09■□□□□ 0.01
VCAN-212ENST00000515397 ANP32CO43423 234 aa15.08■□□□□ 0
VCAN-212ENST00000515397 C10orf71Q711Q0 1435 aa15.08■□□□□ 0
VCAN-212ENST00000515397 PXDNLA1KZ92 1463 aa15.08■□□□□ 0
VCAN-212ENST00000515397 FAM177BA6PVY3 158 aa15.07■□□□□ 0
VCAN-212ENST00000515397 ANXA1P04083 346 aa15.07■□□□□ 0
VCAN-212ENST00000515397 LMOD3Q0VAK6 560 aa15.07■□□□□ 0
VCAN-212ENST00000515397 HLFQ16534 295 aa15.06■□□□□ 0
VCAN-212ENST00000515397 TTLL7Q6ZT98 887 aa15.06■□□□□ 0
VCAN-212ENST00000515397 ZNF784Q8NCA9 323 aaPredicted RBP15.06■□□□□ 0
VCAN-212ENST00000515397 MRS2Q9HD23 443 aa15.06■□□□□ 0
VCAN-212ENST00000515397 SETDB2Q96T68 719 aa15.05■□□□□ -0
VCAN-212ENST00000515397 CARMIL3Q8ND23 1372 aa15.05■□□□□ -0
VCAN-212ENST00000515397 N4BP2Q86UW6 1770 aaPredicted RBP15.05■□□□□ -0
VCAN-212ENST00000515397 CHL1O00533 1208 aa15.04■□□□□ -0
VCAN-212ENST00000515397 PROSER3Q2NL68 480 aa15.04■□□□□ -0
VCAN-212ENST00000515397 ARHGAP27Q6ZUM4 889 aa15.04■□□□□ -0
VCAN-212ENST00000515397 NPHP1O15259 732 aa15.03■□□□□ -0
VCAN-212ENST00000515397 PRR5LQ6MZQ0 368 aa15.03■□□□□ -0
VCAN-212ENST00000515397 PIM2Q9P1W9 311 aa15.03■□□□□ -0
VCAN-212ENST00000515397 SALL2Q9Y467 1007 aaPredicted RBP15.03■□□□□ -0
VCAN-212ENST00000515397 PDIA6Q15084 440 aa15.02■□□□□ -0
VCAN-212ENST00000515397 C2CD5Q86YS7 1000 aa15.02■□□□□ -0
VCAN-212ENST00000515397 ZBTB3Q9H5J0 574 aa15.02■□□□□ -0
VCAN-212ENST00000515397 NIP7Q9Y221 180 aaKnown RBP eCLIP15.02■□□□□ -0
VCAN-212ENST00000515397 ELL2O00472 640 aaPredicted RBP15.01□□□□□ -0.01
VCAN-212ENST00000515397 AIMP1Q12904 312 aaKnown RBP15.01□□□□□ -0.01
VCAN-212ENST00000515397 DALRD3Q5D0E6 543 aaKnown RBP15.01□□□□□ -0.01
VCAN-212ENST00000515397 MBIPQ9NS73 344 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms