RNA–Protein interactions for RNA: ENST00000513664.1

PDGFC-209, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 597 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-209ENST00000513664 HOXB7P09629 217 aa12.31□□□□□ -0.44
PDGFC-209ENST00000513664 SOS1Q07889 1333 aaPredicted RBP12.31□□□□□ -0.44
PDGFC-209ENST00000513664 PNPLA7Q6ZV29 1317 aa12.31□□□□□ -0.44
PDGFC-209ENST00000513664 TRAPPC3LQ5T215 181 aa12.3□□□□□ -0.44
PDGFC-209ENST00000513664 INTS5Q6P9B9 1019 aaKnown RBP12.3□□□□□ -0.44
PDGFC-209ENST00000513664 NPM2Q86SE8 214 aaKnown RBP12.3□□□□□ -0.44
PDGFC-209ENST00000513664 MYH16Q9H6N6 1097 aa12.3□□□□□ -0.44
PDGFC-209ENST00000513664 MBIPQ9NS73 344 aa12.3□□□□□ -0.44
PDGFC-209ENST00000513664 SALL2Q9Y467 1007 aaPredicted RBP12.3□□□□□ -0.44
PDGFC-209ENST00000513664 UBR3Q6ZT12 1888 aa12.29□□□□□ -0.44
PDGFC-209ENST00000513664 LAMB4A4D0S4 1761 aa12.29□□□□□ -0.44
PDGFC-209ENST00000513664 CASZ1Q86V15 1759 aa12.29□□□□□ -0.44
PDGFC-209ENST00000513664 A0A087WZG4 1122 aa12.29□□□□□ -0.44
PDGFC-209ENST00000513664 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.29□□□□□ -0.44
PDGFC-209ENST00000513664 MSH5O43196 834 aa12.29□□□□□ -0.44
PDGFC-209ENST00000513664 IL6STP40189 918 aaPredicted RBP12.29□□□□□ -0.44
PDGFC-209ENST00000513664 MTFR1LQ9H019 292 aa12.29□□□□□ -0.44
PDGFC-209ENST00000513664 ERBB4Q15303 1308 aa12.29□□□□□ -0.44
PDGFC-209ENST00000513664 RFC4P35249 363 aa12.28□□□□□ -0.44
PDGFC-209ENST00000513664 COL23A1Q86Y22 540 aaPredicted RBP12.28□□□□□ -0.44
PDGFC-209ENST00000513664 USP16Q9Y5T5 823 aa12.28□□□□□ -0.44
PDGFC-209ENST00000513664 ZNF521Q96K83 1311 aa12.28□□□□□ -0.44
PDGFC-209ENST00000513664 TUBGCP6Q96RT7 1819 aa12.27□□□□□ -0.44
PDGFC-209ENST00000513664 PHF14O94880 888 aa12.27□□□□□ -0.45
PDGFC-209ENST00000513664 GOLGA2Q08379 1002 aa12.27□□□□□ -0.45
PDGFC-209ENST00000513664 SPON1Q9HCB6 807 aa12.27□□□□□ -0.45
PDGFC-209ENST00000513664 ZBTB1Q9Y2K1 713 aa12.27□□□□□ -0.45
PDGFC-209ENST00000513664 E9PSI1 815 aa12.26□□□□□ -0.45
PDGFC-209ENST00000513664 A1BGP04217 495 aa12.26□□□□□ -0.45
PDGFC-209ENST00000513664 CANXP27824 592 aaKnown RBP12.26□□□□□ -0.45
PDGFC-209ENST00000513664 EIF5P55010 431 aaKnown RBP12.26□□□□□ -0.45
PDGFC-209ENST00000513664 ARHGEF1Q92888 912 aaKnown RBP12.26□□□□□ -0.45
PDGFC-209ENST00000513664 SRCAPQ6ZRS2 3230 aa12.26□□□□□ -0.45
PDGFC-209ENST00000513664 MYH14Q7Z406 1995 aaKnown RBP12.26□□□□□ -0.45
PDGFC-209ENST00000513664 COL15A1P39059 1388 aa12.26□□□□□ -0.45
PDGFC-209ENST00000513664 SENP3-EIF4A1A0A087X0R7 540 aa12.25□□□□□ -0.45
PDGFC-209ENST00000513664 PRAMEF22A3QJZ6 481 aa12.25□□□□□ -0.45
PDGFC-209ENST00000513664 ZPR1O75312 459 aa12.25□□□□□ -0.45
PDGFC-209ENST00000513664 DUSP27Q5VZP5 1158 aa12.25□□□□□ -0.45
PDGFC-209ENST00000513664 NLGN1Q8N2Q7 840 aa12.25□□□□□ -0.45
PDGFC-209ENST00000513664 FANCIQ9NVI1 1328 aa12.25□□□□□ -0.45
PDGFC-209ENST00000513664 RGL2O15211 777 aa12.24□□□□□ -0.45
PDGFC-209ENST00000513664 POLD1P28340 1107 aa12.24□□□□□ -0.45
PDGFC-209ENST00000513664 HDGFL1Q5TGJ6 251 aa12.24□□□□□ -0.45
PDGFC-209ENST00000513664 AMIGO3Q86WK7 504 aa12.24□□□□□ -0.45
PDGFC-209ENST00000513664 NARFQ9UHQ1 456 aa12.24□□□□□ -0.45
PDGFC-209ENST00000513664 LRP5O75197 1615 aa12.23□□□□□ -0.45
PDGFC-209ENST00000513664 USP42Q9H9J4 1324 aaKnown RBP12.23□□□□□ -0.45
PDGFC-209ENST00000513664 ZBTB7AO95365 584 aa12.23□□□□□ -0.45
PDGFC-209ENST00000513664 EIF2S2P20042 333 aaKnown RBP12.23□□□□□ -0.45
PDGFC-209ENST00000513664 HNRNPUQ00839 825 aaKnown RBP eCLIP12.23□□□□□ -0.45
PDGFC-209ENST00000513664 CCDC30Q5VVM6 783 aa12.23□□□□□ -0.45
PDGFC-209ENST00000513664 TSR2Q969E8 191 aaKnown RBP12.23□□□□□ -0.45
PDGFC-209ENST00000513664 PDGFDQ9GZP0 370 aaPredicted RBP12.23□□□□□ -0.45
PDGFC-209ENST00000513664 DBF4Q9UBU7 674 aaPredicted RBP12.23□□□□□ -0.45
PDGFC-209ENST00000513664 C4AP0C0L4 1744 aa12.23□□□□□ -0.45
PDGFC-209ENST00000513664 NBPF26B4DH59 902 aa12.22□□□□□ -0.45
PDGFC-209ENST00000513664 TWISTNBQ3B726 338 aaPredicted RBP12.22□□□□□ -0.45
PDGFC-209ENST00000513664 NBPF10Q6P3W6 841 aaKnown RBP12.22□□□□□ -0.45
PDGFC-209ENST00000513664 NBPF15Q8N660 670 aa12.22□□□□□ -0.45
PDGFC-209ENST00000513664 C8orf58Q8NAV2 365 aa12.22□□□□□ -0.45
PDGFC-209ENST00000513664 DDX21Q9NR30 783 aaKnown RBP eCLIP12.22□□□□□ -0.45
PDGFC-209ENST00000513664 ZNF652Q9Y2D9 606 aa12.22□□□□□ -0.45
PDGFC-209ENST00000513664 ZNF330Q9Y3S2 320 aaPredicted RBP12.22□□□□□ -0.45
PDGFC-209ENST00000513664 COL24A1Q17RW2 1714 aa12.21□□□□□ -0.45
PDGFC-209ENST00000513664 GYS1P13807 737 aa12.21□□□□□ -0.45
PDGFC-209ENST00000513664 SLFN5Q08AF3 891 aa12.21□□□□□ -0.45
PDGFC-209ENST00000513664 KRT24Q2M2I5 525 aa12.21□□□□□ -0.45
PDGFC-209ENST00000513664 KIF6Q6ZMV9 814 aa12.21□□□□□ -0.45
PDGFC-209ENST00000513664 DZIP3Q86Y13 1208 aaKnown RBP12.21□□□□□ -0.45
PDGFC-209ENST00000513664 HYPKQ9NX55 129 aa12.21□□□□□ -0.45
PDGFC-209ENST00000513664 ATF5Q9Y2D1 282 aaPredicted RBP12.21□□□□□ -0.45
PDGFC-209ENST00000513664 ZBED9Q6R2W3 1325 aa12.2□□□□□ -0.46
PDGFC-209ENST00000513664 ELL2O00472 640 aaPredicted RBP12.2□□□□□ -0.46
PDGFC-209ENST00000513664 MYL6BP14649 208 aa12.2□□□□□ -0.46
PDGFC-209ENST00000513664 CLEC4GQ6UXB4 293 aa12.2□□□□□ -0.46
PDGFC-209ENST00000513664 SMIM5Q71RC9 77 aa12.2□□□□□ -0.46
PDGFC-209ENST00000513664 ZNF428Q96B54 188 aa12.2□□□□□ -0.46
PDGFC-209ENST00000513664 ARXQ96QS3 562 aa12.2□□□□□ -0.46
PDGFC-209ENST00000513664 STK31Q9BXU1 1019 aa12.2□□□□□ -0.46
PDGFC-209ENST00000513664 ERVV-1B6SEH8 477 aa12.19□□□□□ -0.46
PDGFC-209ENST00000513664 CT47B1P0C2W7 299 aaPredicted RBP12.19□□□□□ -0.46
PDGFC-209ENST00000513664 PTGER2P43116 358 aa12.19□□□□□ -0.46
PDGFC-209ENST00000513664 EXOSC9Q06265 439 aaKnown RBP12.19□□□□□ -0.46
PDGFC-209ENST00000513664 PDIA6Q15084 440 aa12.19□□□□□ -0.46
PDGFC-209ENST00000513664 USPL1Q5W0Q7 1092 aa12.19□□□□□ -0.46
PDGFC-209ENST00000513664 SGIP1Q9BQI5 828 aa12.19□□□□□ -0.46
PDGFC-209ENST00000513664 SPINK5Q9NQ38 1064 aaPredicted RBP12.19□□□□□ -0.46
PDGFC-209ENST00000513664 CHPF2Q9P2E5 772 aa12.19□□□□□ -0.46
PDGFC-209ENST00000513664 PPP1R1BQ9UD71 204 aaPredicted RBP12.19□□□□□ -0.46
PDGFC-209ENST00000513664 TBC1D2BQ9UPU7 963 aa12.19□□□□□ -0.46
PDGFC-209ENST00000513664 SCN7AQ01118 1682 aa12.19□□□□□ -0.46
PDGFC-209ENST00000513664 PIP4K2AP48426 406 aaPredicted RBP12.18□□□□□ -0.46
PDGFC-209ENST00000513664 MSL1Q68DK7 614 aa12.18□□□□□ -0.46
PDGFC-209ENST00000513664 TRMT2AQ8IZ69 625 aaKnown RBP12.18□□□□□ -0.46
PDGFC-209ENST00000513664 TSPYL6Q8N831 410 aa12.18□□□□□ -0.46
PDGFC-209ENST00000513664 NECTIN2Q92692 538 aa12.18□□□□□ -0.46
PDGFC-209ENST00000513664 SRP68Q9UHB9 627 aaKnown RBP12.18□□□□□ -0.46
PDGFC-209ENST00000513664 MAP3K15Q6ZN16 1313 aa12.17□□□□□ -0.46
PDGFC-209ENST00000513664 VAMP4O75379 141 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms