RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 ZNF330Q9Y3S2 320 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-214ENST00000512234 ELL2O00472 640 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-214ENST00000512234 GIGYF1O75420 1035 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-214ENST00000512234 SNRPA1P09661 255 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-214ENST00000512234 ZNF853P0CG23 659 aa20.04■□□□□ 0.8
SQSTM1-214ENST00000512234 CFAP44Q96MT7 982 aa20.04■□□□□ 0.8
SQSTM1-214ENST00000512234 CNTNAP4Q9C0A0 1308 aa20.04■□□□□ 0.8
SQSTM1-214ENST00000512234 ARHGEF1Q92888 912 aaKnown RBP20.03■□□□□ 0.8
SQSTM1-214ENST00000512234 RTCBQ9Y3I0 505 aaKnown RBP20.03■□□□□ 0.8
SQSTM1-214ENST00000512234 RPS6KA4O75676 772 aa20.02■□□□□ 0.8
SQSTM1-214ENST00000512234 CCDC27Q2M243 656 aa20.02■□□□□ 0.8
SQSTM1-214ENST00000512234 RC3H1Q5TC82 1133 aaKnown RBP20.02■□□□□ 0.8
SQSTM1-214ENST00000512234 SRP68Q9UHB9 627 aaKnown RBP20.02■□□□□ 0.8
SQSTM1-214ENST00000512234 CASZ1Q86V15 1759 aa20.02■□□□□ 0.8
SQSTM1-214ENST00000512234 UBR3Q6ZT12 1888 aa20.02■□□□□ 0.8
SQSTM1-214ENST00000512234 ZNF831Q5JPB2 1677 aa20.02■□□□□ 0.8
SQSTM1-214ENST00000512234 STARD3NLO95772 234 aa20.02■□□□□ 0.79
SQSTM1-214ENST00000512234 EIF2S2P20042 333 aaKnown RBP20.02■□□□□ 0.79
SQSTM1-214ENST00000512234 IFT57Q9NWB7 429 aa20.01■□□□□ 0.79
SQSTM1-214ENST00000512234 NBPF26B4DH59 902 aa20■□□□□ 0.79
SQSTM1-214ENST00000512234 TRAPPC3LQ5T215 181 aa20■□□□□ 0.79
SQSTM1-214ENST00000512234 NBPF10Q6P3W6 841 aaKnown RBP20■□□□□ 0.79
SQSTM1-214ENST00000512234 NBPF15Q8N660 670 aa20■□□□□ 0.79
SQSTM1-214ENST00000512234 ANXA1P04083 346 aa19.99■□□□□ 0.79
SQSTM1-214ENST00000512234 GNAI1P63096 354 aa19.99■□□□□ 0.79
SQSTM1-214ENST00000512234 NGEFQ8N5V2 710 aa19.99■□□□□ 0.79
SQSTM1-214ENST00000512234 C8orf58Q8NAV2 365 aa19.99■□□□□ 0.79
SQSTM1-214ENST00000512234 ARXQ96QS3 562 aa19.99■□□□□ 0.79
SQSTM1-214ENST00000512234 SSFA2P28290 1259 aa19.99■□□□□ 0.79
SQSTM1-214ENST00000512234 SOS1Q07889 1333 aaPredicted RBP19.98■□□□□ 0.79
SQSTM1-214ENST00000512234 TSPYL6Q8N831 410 aa19.98■□□□□ 0.79
SQSTM1-214ENST00000512234 TEX13AQ9BXU3 409 aaPredicted RBP19.98■□□□□ 0.79
SQSTM1-214ENST00000512234 CICQ96RK0 1608 aaPredicted RBP19.97■□□□□ 0.79
SQSTM1-214ENST00000512234 MYL6BP14649 208 aa19.97■□□□□ 0.79
SQSTM1-214ENST00000512234 BABAM1Q9NWV8 329 aa19.97■□□□□ 0.79
SQSTM1-214ENST00000512234 TBC1D2BQ9UPU7 963 aa19.97■□□□□ 0.79
SQSTM1-214ENST00000512234 RFC4P35249 363 aa19.96■□□□□ 0.79
SQSTM1-214ENST00000512234 CALD1Q05682 793 aaKnown RBP19.96■□□□□ 0.79
SQSTM1-214ENST00000512234 PROSER3Q2NL68 480 aa19.96■□□□□ 0.79
SQSTM1-214ENST00000512234 CDCA7LQ96GN5 454 aa19.96■□□□□ 0.79
SQSTM1-214ENST00000512234 ZNF521Q96K83 1311 aa19.96■□□□□ 0.79
SQSTM1-214ENST00000512234 TCERG1O14776 1098 aaKnown RBP19.96■□□□□ 0.79
SQSTM1-214ENST00000512234 PTGER2P43116 358 aa19.96■□□□□ 0.79
SQSTM1-214ENST00000512234 DUSP27Q5VZP5 1158 aa19.96■□□□□ 0.79
SQSTM1-214ENST00000512234 EIF5P55010 431 aaKnown RBP19.95■□□□□ 0.78
SQSTM1-214ENST00000512234 MTFR1LQ9H019 292 aa19.95■□□□□ 0.78
SQSTM1-214ENST00000512234 SPON1Q9HCB6 807 aa19.95■□□□□ 0.78
SQSTM1-214ENST00000512234 COL15A1P39059 1388 aa19.94■□□□□ 0.78
SQSTM1-214ENST00000512234 FANCIQ9NVI1 1328 aa19.94■□□□□ 0.78
SQSTM1-214ENST00000512234 USPL1Q5W0Q7 1092 aa19.94■□□□□ 0.78
SQSTM1-214ENST00000512234 WDR63Q8IWG1 891 aa19.94■□□□□ 0.78
SQSTM1-214ENST00000512234 FLAD1Q8NFF5 587 aa19.94■□□□□ 0.78
SQSTM1-214ENST00000512234 QSER1Q2KHR3 1735 aa19.94■□□□□ 0.78
SQSTM1-214ENST00000512234 HNRNPUQ00839 825 aaKnown RBP eCLIP19.93■□□□□ 0.78
SQSTM1-214ENST00000512234 GYS1P13807 737 aa19.93■□□□□ 0.78
SQSTM1-214ENST00000512234 FKBP8Q14318 412 aa19.93■□□□□ 0.78
SQSTM1-214ENST00000512234 PDIA6Q15084 440 aa19.93■□□□□ 0.78
SQSTM1-214ENST00000512234 SGIP1Q9BQI5 828 aa19.93■□□□□ 0.78
SQSTM1-214ENST00000512234 NCBP3Q53F19 620 aaKnown RBP19.92■□□□□ 0.78
SQSTM1-214ENST00000512234 IL16Q14005 1332 aa19.91■□□□□ 0.78
SQSTM1-214ENST00000512234 C4AP0C0L4 1744 aa19.91■□□□□ 0.78
SQSTM1-214ENST00000512234 IL6STP40189 918 aaPredicted RBP19.91■□□□□ 0.78
SQSTM1-214ENST00000512234 EXOSC9Q06265 439 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-214ENST00000512234 BCL2L12Q9HB09 334 aa19.91■□□□□ 0.78
SQSTM1-214ENST00000512234 USP42Q9H9J4 1324 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-214ENST00000512234 HDGFL1Q5TGJ6 251 aa19.9■□□□□ 0.78
SQSTM1-214ENST00000512234 TTLL7Q6ZT98 887 aa19.9■□□□□ 0.78
SQSTM1-214ENST00000512234 SLC16A10Q8TF71 515 aa19.9■□□□□ 0.78
SQSTM1-214ENST00000512234 CHPF2Q9P2E5 772 aa19.9■□□□□ 0.78
SQSTM1-214ENST00000512234 ADRA2BP18089 450 aa19.9■□□□□ 0.78
SQSTM1-214ENST00000512234 ZPR1O75312 459 aa19.89■□□□□ 0.77
SQSTM1-214ENST00000512234 HMGB2P26583 209 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-214ENST00000512234 BICDL1Q6ZP65 573 aa19.89■□□□□ 0.77
SQSTM1-214ENST00000512234 DZIP3Q86Y13 1208 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-214ENST00000512234 KLHL34Q8N239 644 aa19.89■□□□□ 0.77
SQSTM1-214ENST00000512234 LAMB4A4D0S4 1761 aa19.89■□□□□ 0.77
SQSTM1-214ENST00000512234 GOLGA2Q08379 1002 aa19.88■□□□□ 0.77
SQSTM1-214ENST00000512234 AIMP1Q12904 312 aaKnown RBP19.88■□□□□ 0.77
SQSTM1-214ENST00000512234 NARFQ9UHQ1 456 aa19.88■□□□□ 0.77
SQSTM1-214ENST00000512234 MMP10P09238 476 aa19.88■□□□□ 0.77
SQSTM1-214ENST00000512234 LRP10Q7Z4F1 713 aa19.88■□□□□ 0.77
SQSTM1-214ENST00000512234 PPP1R1BQ9UD71 204 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-214ENST00000512234 CAMTA2O94983 1202 aa19.87■□□□□ 0.77
SQSTM1-214ENST00000512234 TWISTNBQ3B726 338 aaPredicted RBP19.87■□□□□ 0.77
SQSTM1-214ENST00000512234 ZNF428Q96B54 188 aa19.87■□□□□ 0.77
SQSTM1-214ENST00000512234 HLFQ16534 295 aa19.86■□□□□ 0.77
SQSTM1-214ENST00000512234 SLFN5Q08AF3 891 aa19.85■□□□□ 0.77
SQSTM1-214ENST00000512234 NPM2Q86SE8 214 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-214ENST00000512234 ZBTB3Q9H5J0 574 aa19.85■□□□□ 0.77
SQSTM1-214ENST00000512234 DDR1Q08345 913 aa19.85■□□□□ 0.77
SQSTM1-214ENST00000512234 TBC1D9BQ66K14 1250 aa19.85■□□□□ 0.77
SQSTM1-214ENST00000512234 XAGE3Q8WTP9 111 aa19.85■□□□□ 0.77
SQSTM1-214ENST00000512234 PHAXQ9H814 394 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-214ENST00000512234 POLD1P28340 1107 aa19.84■□□□□ 0.77
SQSTM1-214ENST00000512234 COPS6Q7L5N1 327 aa19.84■□□□□ 0.77
SQSTM1-214ENST00000512234 MYH16Q9H6N6 1097 aa19.84■□□□□ 0.77
SQSTM1-214ENST00000512234 A0A087WZG4 1122 aa19.83■□□□□ 0.77
SQSTM1-214ENST00000512234 NFIXQ14938 502 aa19.83■□□□□ 0.77
SQSTM1-214ENST00000512234 NLGN1Q8N2Q7 840 aa19.83■□□□□ 0.77
SQSTM1-214ENST00000512234 CCDC24Q8N4L8 307 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms