RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, humanhuman

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-215ENST00000511843 PRKRIP1Q9H875 184 aaPredicted RBP17.63■□□□□ 0.41
RNF4-215ENST00000511843 USP42Q9H9J4 1324 aaKnown RBP17.63■□□□□ 0.41
RNF4-215ENST00000511843 AFDNP55196 1824 aaKnown RBP17.63■□□□□ 0.41
RNF4-215ENST00000511843 NFE2L2Q16236 605 aa17.62■□□□□ 0.41
RNF4-215ENST00000511843 MIS18AQ9NYP9 233 aa17.62■□□□□ 0.41
RNF4-215ENST00000511843 MAPK8IP3Q9UPT6 1336 aa17.62■□□□□ 0.41
RNF4-215ENST00000511843 COL15A1P39059 1388 aa17.62■□□□□ 0.41
RNF4-215ENST00000511843 PRAMEF22A3QJZ6 481 aa17.61■□□□□ 0.41
RNF4-215ENST00000511843 YBX3P16989 372 aaKnown RBP eCLIP17.61■□□□□ 0.41
RNF4-215ENST00000511843 YY1P25490 414 aa17.61■□□□□ 0.41
RNF4-215ENST00000511843 FKBP8Q14318 412 aa17.61■□□□□ 0.41
RNF4-215ENST00000511843 CCDC146Q8IYE0 955 aa17.61■□□□□ 0.41
RNF4-215ENST00000511843 NLGN1Q8N2Q7 840 aa17.61■□□□□ 0.41
RNF4-215ENST00000511843 FMNL2Q96PY5 1086 aa17.61■□□□□ 0.41
RNF4-215ENST00000511843 CD2APQ9Y5K6 639 aa17.61■□□□□ 0.41
RNF4-215ENST00000511843 LAMB4A4D0S4 1761 aa17.61■□□□□ 0.41
RNF4-215ENST00000511843 HTATSF1O43719 755 aaKnown RBP17.6■□□□□ 0.41
RNF4-215ENST00000511843 USPL1Q5W0Q7 1092 aa17.6■□□□□ 0.41
RNF4-215ENST00000511843 ZNF330Q9Y3S2 320 aaPredicted RBP17.6■□□□□ 0.41
RNF4-215ENST00000511843 SCN7AQ01118 1682 aa17.6■□□□□ 0.41
RNF4-215ENST00000511843 STARD3NLO95772 234 aa17.59■□□□□ 0.41
RNF4-215ENST00000511843 PIP4K2AP48426 406 aaPredicted RBP17.59■□□□□ 0.41
RNF4-215ENST00000511843 UTRNP46939 3433 aa17.59■□□□□ 0.41
RNF4-215ENST00000511843 ZPR1O75312 459 aa17.58■□□□□ 0.4
RNF4-215ENST00000511843 A1BGP04217 495 aa17.58■□□□□ 0.4
RNF4-215ENST00000511843 DDR1Q08345 913 aa17.58■□□□□ 0.4
RNF4-215ENST00000511843 RRP7AQ9Y3A4 280 aaKnown RBP17.58■□□□□ 0.4
RNF4-215ENST00000511843 BRCA1P38398 1863 aaKnown RBP17.58■□□□□ 0.4
RNF4-215ENST00000511843 BCORQ6W2J9 1755 aa17.58■□□□□ 0.4
RNF4-215ENST00000511843 C10orf71Q711Q0 1435 aa17.57■□□□□ 0.4
RNF4-215ENST00000511843 TAF7Q15545 349 aaPredicted RBP17.57■□□□□ 0.4
RNF4-215ENST00000511843 PNNQ9H307 717 aaKnown RBP17.57■□□□□ 0.4
RNF4-215ENST00000511843 USP16Q9Y5T5 823 aa17.57■□□□□ 0.4
RNF4-215ENST00000511843 PARP3Q9Y6F1 533 aa17.57■□□□□ 0.4
RNF4-215ENST00000511843 ZNF316A6NFI3 1004 aaPredicted RBP17.56■□□□□ 0.4
RNF4-215ENST00000511843 EIF5P55010 431 aaKnown RBP17.56■□□□□ 0.4
RNF4-215ENST00000511843 WDR43Q15061 677 aaKnown RBP eCLIP17.56■□□□□ 0.4
RNF4-215ENST00000511843 BCL2L12Q9HB09 334 aa17.56■□□□□ 0.4
RNF4-215ENST00000511843 NARFQ9UHQ1 456 aa17.56■□□□□ 0.4
RNF4-215ENST00000511843 PXDNLA1KZ92 1463 aa17.56■□□□□ 0.4
RNF4-215ENST00000511843 RIPK4P57078 832 aa17.55■□□□□ 0.4
RNF4-215ENST00000511843 TEX13AQ9BXU3 409 aaPredicted RBP17.55■□□□□ 0.4
RNF4-215ENST00000511843 ADAMTS8Q9UP79 889 aa17.55■□□□□ 0.4
RNF4-215ENST00000511843 NRXN2Q9P2S2 1712 aa17.55■□□□□ 0.4
RNF4-215ENST00000511843 TMPOP42166 694 aaKnown RBP17.54■□□□□ 0.4
RNF4-215ENST00000511843 NEUROD2Q15784 382 aa17.54■□□□□ 0.4
RNF4-215ENST00000511843 TBC1D2BQ9UPU7 963 aa17.54■□□□□ 0.4
RNF4-215ENST00000511843 A0A0G2JLW4 131 aa17.53■□□□□ 0.4
RNF4-215ENST00000511843 POLRMTO00411 1230 aaKnown RBP17.53■□□□□ 0.4
RNF4-215ENST00000511843 SNRPA1P09661 255 aaKnown RBP17.53■□□□□ 0.4
RNF4-215ENST00000511843 TM4SF1P30408 202 aa17.53■□□□□ 0.4
RNF4-215ENST00000511843 NFIXQ14938 502 aa17.53■□□□□ 0.4
RNF4-215ENST00000511843 CCDC184Q52MB2 194 aa17.53■□□□□ 0.4
RNF4-215ENST00000511843 BICDL1Q6ZP65 573 aa17.52■□□□□ 0.4
RNF4-215ENST00000511843 IL6STP40189 918 aaPredicted RBP17.51■□□□□ 0.39
RNF4-215ENST00000511843 ANKRD31Q8N7Z5 1873 aa17.51■□□□□ 0.39
RNF4-215ENST00000511843 RUNDC1Q96C34 613 aa17.51■□□□□ 0.39
RNF4-215ENST00000511843 NBPF26B4DH59 902 aa17.5■□□□□ 0.39
RNF4-215ENST00000511843 DPEP1P16444 411 aa17.5■□□□□ 0.39
RNF4-215ENST00000511843 NBPF10Q6P3W6 841 aaKnown RBP17.5■□□□□ 0.39
RNF4-215ENST00000511843 NBPF15Q8N660 670 aa17.5■□□□□ 0.39
RNF4-215ENST00000511843 ARFGEF1Q9Y6D6 1849 aa17.49■□□□□ 0.39
RNF4-215ENST00000511843 DLEC1Q9Y238 1755 aa17.49■□□□□ 0.39
RNF4-215ENST00000511843 A0A087WZG4 1122 aa17.49■□□□□ 0.39
RNF4-215ENST00000511843 EIF4A1P60842 406 aaKnown RBP17.49■□□□□ 0.39
RNF4-215ENST00000511843 TBC1D9BQ66K14 1250 aa17.49■□□□□ 0.39
RNF4-215ENST00000511843 PNISRQ8TF01 805 aaKnown RBP17.49■□□□□ 0.39
RNF4-215ENST00000511843 CAMTA2O94983 1202 aa17.48■□□□□ 0.39
RNF4-215ENST00000511843 DZIP3Q86Y13 1208 aaKnown RBP17.48■□□□□ 0.39
RNF4-215ENST00000511843 TSPYL4Q9UJ04 414 aa17.48■□□□□ 0.39
RNF4-215ENST00000511843 TRIM35Q9UPQ4 493 aa17.48■□□□□ 0.39
RNF4-215ENST00000511843 CARMIL3Q8ND23 1372 aa17.48■□□□□ 0.39
RNF4-215ENST00000511843 NUP98P52948 1817 aa17.47■□□□□ 0.39
RNF4-215ENST00000511843 GRIN3BO60391 1043 aa17.47■□□□□ 0.39
RNF4-215ENST00000511843 GIGYF1O75420 1035 aaPredicted RBP17.47■□□□□ 0.39
RNF4-215ENST00000511843 SERPINB2P05120 415 aa17.47■□□□□ 0.39
RNF4-215ENST00000511843 TGFB2P61812 414 aa17.47■□□□□ 0.39
RNF4-215ENST00000511843 NPM2Q86SE8 214 aaKnown RBP17.47■□□□□ 0.39
RNF4-215ENST00000511843 CACNA1SQ13698 1873 aa17.47■□□□□ 0.39
RNF4-215ENST00000511843 SENP3-EIF4A1A0A087X0R7 540 aa17.46■□□□□ 0.39
RNF4-215ENST00000511843 KCNA3P22001 575 aa17.46■□□□□ 0.39
RNF4-215ENST00000511843 CHRNA5P30532 468 aa17.46■□□□□ 0.39
RNF4-215ENST00000511843 LMOD3Q0VAK6 560 aa17.46■□□□□ 0.39
RNF4-215ENST00000511843 CCDC24Q8N4L8 307 aa17.46■□□□□ 0.39
RNF4-215ENST00000511843 BCS1LQ9Y276 419 aa17.46■□□□□ 0.39
RNF4-215ENST00000511843 COL11A2P13942 1736 aaPredicted RBP17.46■□□□□ 0.39
RNF4-215ENST00000511843 NGEFQ8N5V2 710 aa17.45■□□□□ 0.38
RNF4-215ENST00000511843 ZNF784Q8NCA9 323 aaPredicted RBP17.45■□□□□ 0.38
RNF4-215ENST00000511843 LAS1LQ9Y4W2 734 aaKnown RBP17.45■□□□□ 0.38
RNF4-215ENST00000511843 APAF1O14727 1248 aa17.43■□□□□ 0.38
RNF4-215ENST00000511843 MYL6BP14649 208 aa17.43■□□□□ 0.38
RNF4-215ENST00000511843 KRT24Q2M2I5 525 aa17.43■□□□□ 0.38
RNF4-215ENST00000511843 NECTIN2Q92692 538 aa17.41■□□□□ 0.38
RNF4-215ENST00000511843 ANP32CO43423 234 aa17.4■□□□□ 0.38
RNF4-215ENST00000511843 EIF2S2P20042 333 aaKnown RBP17.4■□□□□ 0.38
RNF4-215ENST00000511843 HLFQ16534 295 aa17.4■□□□□ 0.38
RNF4-215ENST00000511843 PRR5LQ6MZQ0 368 aa17.4■□□□□ 0.38
RNF4-215ENST00000511843 TTLL7Q6ZT98 887 aa17.4■□□□□ 0.38
RNF4-215ENST00000511843 SETDB2Q96T68 719 aa17.4■□□□□ 0.38
RNF4-215ENST00000511843 PIM2Q9P1W9 311 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms