RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 USP16Q9Y5T5 823 aa38.34■■■■□ 3.73
LIMCH1-211ENST00000509638 STARD3NLO95772 234 aa38.33■■■■□ 3.73
LIMCH1-211ENST00000509638 CRKLP46109 303 aaKnown RBP38.33■■■■□ 3.73
LIMCH1-211ENST00000509638 HMGB2P26583 209 aaKnown RBP38.32■■■■□ 3.73
LIMCH1-211ENST00000509638 ZNF827Q17R98 1081 aa38.32■■■■□ 3.73
LIMCH1-211ENST00000509638 ELL2O00472 640 aaPredicted RBP38.31■■■■□ 3.72
LIMCH1-211ENST00000509638 HOXB7P09629 217 aa38.31■■■■□ 3.72
LIMCH1-211ENST00000509638 EXOSC9Q06265 439 aaKnown RBP38.31■■■■□ 3.72
LIMCH1-211ENST00000509638 TRMT2AQ8IZ69 625 aaKnown RBP38.31■■■■□ 3.72
LIMCH1-211ENST00000509638 TSPYL6Q8N831 410 aa38.31■■■■□ 3.72
LIMCH1-211ENST00000509638 QSER1Q2KHR3 1735 aa38.3■■■■□ 3.72
LIMCH1-211ENST00000509638 AK7Q96M32 723 aa38.3■■■■□ 3.72
LIMCH1-211ENST00000509638 AKT1S1Q96B36 256 aa38.29■■■■□ 3.72
LIMCH1-211ENST00000509638 CCDC87Q9NVE4 849 aa38.28■■■■□ 3.72
LIMCH1-211ENST00000509638 TWISTNBQ3B726 338 aaPredicted RBP38.27■■■■□ 3.72
LIMCH1-211ENST00000509638 STK32BQ9NY57 414 aa38.27■■■■□ 3.72
LIMCH1-211ENST00000509638 ZBTB1Q9Y2K1 713 aa38.27■■■■□ 3.72
LIMCH1-211ENST00000509638 GNPATO15228 680 aa38.26■■■■□ 3.72
LIMCH1-211ENST00000509638 EIF2S2P20042 333 aaKnown RBP38.26■■■■□ 3.72
LIMCH1-211ENST00000509638 RC3H1Q5TC82 1133 aaKnown RBP38.26■■■■□ 3.72
LIMCH1-211ENST00000509638 NBPF14Q5TI25 921 aa38.26■■■■□ 3.72
LIMCH1-211ENST00000509638 INTS5Q6P9B9 1019 aaKnown RBP38.26■■■■□ 3.72
LIMCH1-211ENST00000509638 SOS1Q07889 1333 aaPredicted RBP38.26■■■■□ 3.71
LIMCH1-211ENST00000509638 HDGFL1Q5TGJ6 251 aa38.25■■■■□ 3.71
LIMCH1-211ENST00000509638 A1BGP04217 495 aa38.24■■■■□ 3.71
LIMCH1-211ENST00000509638 NECTIN2Q92692 538 aa38.24■■■■□ 3.71
LIMCH1-211ENST00000509638 C4AP0C0L4 1744 aa38.23■■■■□ 3.71
LIMCH1-211ENST00000509638 SLC15A2Q16348 729 aa38.23■■■■□ 3.71
LIMCH1-211ENST00000509638 PIP4K2AP48426 406 aaPredicted RBP38.22■■■■□ 3.71
LIMCH1-211ENST00000509638 TFCP2L1Q9NZI6 479 aa38.22■■■■□ 3.71
LIMCH1-211ENST00000509638 AMIGO3Q86WK7 504 aa38.21■■■■□ 3.71
LIMCH1-211ENST00000509638 CANXP27824 592 aaKnown RBP38.2■■■■□ 3.71
LIMCH1-211ENST00000509638 ERBB4Q15303 1308 aa38.18■■■■□ 3.7
LIMCH1-211ENST00000509638 RTCBQ9Y3I0 505 aaKnown RBP38.18■■■■□ 3.7
LIMCH1-211ENST00000509638 NBPF26B4DH59 902 aa38.17■■■■□ 3.7
LIMCH1-211ENST00000509638 PHF14O94880 888 aa38.17■■■■□ 3.7
LIMCH1-211ENST00000509638 NBPF10Q6P3W6 841 aaKnown RBP38.17■■■■□ 3.7
LIMCH1-211ENST00000509638 SMIM5Q71RC9 77 aa38.17■■■■□ 3.7
LIMCH1-211ENST00000509638 NBPF15Q8N660 670 aa38.17■■■■□ 3.7
LIMCH1-211ENST00000509638 VAMP4O75379 141 aa38.16■■■■□ 3.7
LIMCH1-211ENST00000509638 RPS6KA4O75676 772 aa38.16■■■■□ 3.7
LIMCH1-211ENST00000509638 COL15A1P39059 1388 aa38.16■■■■□ 3.7
LIMCH1-211ENST00000509638 CHPF2Q9P2E5 772 aa38.15■■■■□ 3.7
LIMCH1-211ENST00000509638 ZNF330Q9Y3S2 320 aaPredicted RBP38.15■■■■□ 3.7
LIMCH1-211ENST00000509638 PNPLA7Q6ZV29 1317 aa38.14■■■■□ 3.7
LIMCH1-211ENST00000509638 SSFA2P28290 1259 aa38.14■■■■□ 3.7
LIMCH1-211ENST00000509638 CACNA1FO60840 1977 aa38.13■■■■□ 3.69
LIMCH1-211ENST00000509638 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP38.13■■■■□ 3.69
LIMCH1-211ENST00000509638 MYL6BP14649 208 aa38.13■■■■□ 3.69
LIMCH1-211ENST00000509638 IL6STP40189 918 aaPredicted RBP38.13■■■■□ 3.69
LIMCH1-211ENST00000509638 R3HDM1Q15032 1099 aaKnown RBP38.13■■■■□ 3.69
LIMCH1-211ENST00000509638 PROSER3Q2NL68 480 aa38.13■■■■□ 3.69
LIMCH1-211ENST00000509638 CCDC30Q5VVM6 783 aa38.13■■■■□ 3.69
LIMCH1-211ENST00000509638 CASZ1Q86V15 1759 aa38.12■■■■□ 3.69
LIMCH1-211ENST00000509638 PDIA6Q15084 440 aa38.12■■■■□ 3.69
LIMCH1-211ENST00000509638 CHMP4AQ9BY43 222 aa38.12■■■■□ 3.69
LIMCH1-211ENST00000509638 ANXA1P04083 346 aa38.11■■■■□ 3.69
LIMCH1-211ENST00000509638 EIF5P55010 431 aaKnown RBP38.1■■■■□ 3.69
LIMCH1-211ENST00000509638 DBF4Q9UBU7 674 aaPredicted RBP38.1■■■■□ 3.69
LIMCH1-211ENST00000509638 SCN7AQ01118 1682 aa38.1■■■■□ 3.69
LIMCH1-211ENST00000509638 TCERG1O14776 1098 aaKnown RBP38.1■■■■□ 3.69
LIMCH1-211ENST00000509638 DDX21Q9NR30 783 aaKnown RBP eCLIP38.1■■■■□ 3.69
LIMCH1-211ENST00000509638 ADRA2BP18089 450 aa38.09■■■■□ 3.69
LIMCH1-211ENST00000509638 BCORQ6W2J9 1755 aa38.08■■■■□ 3.69
LIMCH1-211ENST00000509638 PSDA5PKW4 1024 aaPredicted RBP38.08■■■■□ 3.69
LIMCH1-211ENST00000509638 CT47B1P0C2W7 299 aaPredicted RBP38.07■■■■□ 3.69
LIMCH1-211ENST00000509638 STK31Q9BXU1 1019 aa38.07■■■■□ 3.69
LIMCH1-211ENST00000509638 TRAPPC3LQ5T215 181 aa38.06■■■■□ 3.68
LIMCH1-211ENST00000509638 LRP10Q7Z4F1 713 aa38.06■■■■□ 3.68
LIMCH1-211ENST00000509638 FLAD1Q8NFF5 587 aa38.06■■■■□ 3.68
LIMCH1-211ENST00000509638 NPM2Q86SE8 214 aaKnown RBP38.06■■■■□ 3.68
LIMCH1-211ENST00000509638 COL23A1Q86Y22 540 aaPredicted RBP38.05■■■■□ 3.68
LIMCH1-211ENST00000509638 ARHGEF1Q92888 912 aaKnown RBP38.05■■■■□ 3.68
LIMCH1-211ENST00000509638 PDGFDQ9GZP0 370 aaPredicted RBP38.03■■■■□ 3.68
LIMCH1-211ENST00000509638 MSH5O43196 834 aa38.02■■■■□ 3.68
LIMCH1-211ENST00000509638 ZNF428Q96B54 188 aa38.02■■■■□ 3.68
LIMCH1-211ENST00000509638 HYPKQ9NX55 129 aa38.02■■■■□ 3.68
LIMCH1-211ENST00000509638 A0A087WZG4 1122 aa38.01■■■■□ 3.67
LIMCH1-211ENST00000509638 RFC4P35249 363 aa38.01■■■■□ 3.67
LIMCH1-211ENST00000509638 DZIP3Q86Y13 1208 aaKnown RBP37.99■■■■□ 3.67
LIMCH1-211ENST00000509638 ARXQ96QS3 562 aa37.99■■■■□ 3.67
LIMCH1-211ENST00000509638 USP42Q9H9J4 1324 aaKnown RBP37.99■■■■□ 3.67
LIMCH1-211ENST00000509638 SLC4A2P04920 1241 aa37.98■■■■□ 3.67
LIMCH1-211ENST00000509638 XAGE3Q8WTP9 111 aa37.98■■■■□ 3.67
LIMCH1-211ENST00000509638 TBC1D2BQ9UPU7 963 aa37.98■■■■□ 3.67
LIMCH1-211ENST00000509638 SSH1Q8WYL5 1049 aa37.97■■■■□ 3.67
LIMCH1-211ENST00000509638 BCL2L13Q9BXK5 485 aa37.97■■■■□ 3.67
LIMCH1-211ENST00000509638 SRP68Q9UHB9 627 aaKnown RBP37.97■■■■□ 3.67
LIMCH1-211ENST00000509638 AIMP1Q12904 312 aaKnown RBP37.97■■■■□ 3.67
LIMCH1-211ENST00000509638 TTLL7Q6ZT98 887 aa37.97■■■■□ 3.67
LIMCH1-211ENST00000509638 PHAXQ9H814 394 aaKnown RBP37.97■■■■□ 3.67
LIMCH1-211ENST00000509638 ARFGEF2Q9Y6D5 1785 aa37.96■■■■□ 3.67
LIMCH1-211ENST00000509638 COPS6Q7L5N1 327 aa37.95■■■■□ 3.67
LIMCH1-211ENST00000509638 NARFQ9UHQ1 456 aa37.95■■■■□ 3.67
LIMCH1-211ENST00000509638 ZPR1O75312 459 aa37.94■■■■□ 3.66
LIMCH1-211ENST00000509638 ALDH1L2Q3SY69 923 aa37.94■■■■□ 3.66
LIMCH1-211ENST00000509638 KIF6Q6ZMV9 814 aa37.94■■■■□ 3.66
LIMCH1-211ENST00000509638 SMC4Q9NTJ3 1288 aa37.94■■■■□ 3.66
LIMCH1-211ENST00000509638 NUP98P52948 1817 aa37.94■■■■□ 3.66
LIMCH1-211ENST00000509638 RARSP54136 660 aaKnown RBP37.93■■■■□ 3.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms