RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 RPS6KA4O75676 772 aa10.96□□□□□ -0.65
PDGFC-205ENST00000506880 CYP19A1P11511 503 aaPredicted RBP10.96□□□□□ -0.65
PDGFC-205ENST00000506880 IL6STP40189 918 aaPredicted RBP10.96□□□□□ -0.65
PDGFC-205ENST00000506880 NEUROD2Q15784 382 aa10.96□□□□□ -0.65
PDGFC-205ENST00000506880 PTF1AQ7RTS3 328 aa10.96□□□□□ -0.65
PDGFC-205ENST00000506880 NPM2Q86SE8 214 aaKnown RBP10.96□□□□□ -0.65
PDGFC-205ENST00000506880 AK7Q96M32 723 aa10.96□□□□□ -0.65
PDGFC-205ENST00000506880 RBM42Q9BTD8 480 aaKnown RBP10.96□□□□□ -0.65
PDGFC-205ENST00000506880 LRRC4BQ9NT99 713 aa10.96□□□□□ -0.65
PDGFC-205ENST00000506880 CCDC87Q9NVE4 849 aa10.96□□□□□ -0.65
PDGFC-205ENST00000506880 RTCBQ9Y3I0 505 aaKnown RBP10.96□□□□□ -0.65
PDGFC-205ENST00000506880 DCTN1Q14203 1278 aa10.95□□□□□ -0.66
PDGFC-205ENST00000506880 CASZ1Q86V15 1759 aa10.95□□□□□ -0.66
PDGFC-205ENST00000506880 TUBGCP6Q96RT7 1819 aa10.94□□□□□ -0.66
PDGFC-205ENST00000506880 PTCD1O75127 700 aaKnown RBP10.94□□□□□ -0.66
PDGFC-205ENST00000506880 MBIPQ9NS73 344 aa10.94□□□□□ -0.66
PDGFC-205ENST00000506880 RRP7AQ9Y3A4 280 aaKnown RBP10.94□□□□□ -0.66
PDGFC-205ENST00000506880 CRKLP46109 303 aaKnown RBP10.93□□□□□ -0.66
PDGFC-205ENST00000506880 SLC39A6Q13433 755 aa10.93□□□□□ -0.66
PDGFC-205ENST00000506880 ITPK1Q13572 414 aa10.93□□□□□ -0.66
PDGFC-205ENST00000506880 CLEC4GQ6UXB4 293 aa10.93□□□□□ -0.66
PDGFC-205ENST00000506880 TRMT2AQ8IZ69 625 aaKnown RBP10.93□□□□□ -0.66
PDGFC-205ENST00000506880 SLC4A9Q96Q91 983 aa10.93□□□□□ -0.66
PDGFC-205ENST00000506880 TFCP2L1Q9NZI6 479 aa10.93□□□□□ -0.66
PDGFC-205ENST00000506880 LRP5O75197 1615 aa10.92□□□□□ -0.66
PDGFC-205ENST00000506880 EIF5P55010 431 aaKnown RBP10.92□□□□□ -0.66
PDGFC-205ENST00000506880 TRAPPC3LQ5T215 181 aa10.92□□□□□ -0.66
PDGFC-205ENST00000506880 CCDC30Q5VVM6 783 aa10.92□□□□□ -0.66
PDGFC-205ENST00000506880 LINC00116Q8NCU8 138 aa10.92□□□□□ -0.66
PDGFC-205ENST00000506880 HYPKQ9NX55 129 aa10.92□□□□□ -0.66
PDGFC-205ENST00000506880 DBF4Q9UBU7 674 aaPredicted RBP10.92□□□□□ -0.66
PDGFC-205ENST00000506880 IBTKQ9P2D0 1353 aaPredicted RBP10.91□□□□□ -0.66
PDGFC-205ENST00000506880 ERVV-1B6SEH8 477 aa10.91□□□□□ -0.66
PDGFC-205ENST00000506880 SLFN5Q08AF3 891 aa10.91□□□□□ -0.66
PDGFC-205ENST00000506880 INTS5Q6P9B9 1019 aaKnown RBP10.91□□□□□ -0.66
PDGFC-205ENST00000506880 DNAJC10Q8IXB1 793 aa10.91□□□□□ -0.66
PDGFC-205ENST00000506880 NLGN1Q8N2Q7 840 aa10.91□□□□□ -0.66
PDGFC-205ENST00000506880 THUMPD2Q9BTF0 503 aaKnown RBP10.91□□□□□ -0.66
PDGFC-205ENST00000506880 MTFR1LQ9H019 292 aa10.91□□□□□ -0.66
PDGFC-205ENST00000506880 DDX21Q9NR30 783 aaKnown RBP eCLIP10.91□□□□□ -0.66
PDGFC-205ENST00000506880 ZNF652Q9Y2D9 606 aa10.91□□□□□ -0.66
PDGFC-205ENST00000506880 C4AP0C0L4 1744 aa10.91□□□□□ -0.66
PDGFC-205ENST00000506880 COL15A1P39059 1388 aa10.9□□□□□ -0.66
PDGFC-205ENST00000506880 BCORQ6W2J9 1755 aa10.9□□□□□ -0.66
PDGFC-205ENST00000506880 FANCIQ9NVI1 1328 aa10.9□□□□□ -0.66
PDGFC-205ENST00000506880 SCN7AQ01118 1682 aa10.9□□□□□ -0.66
PDGFC-205ENST00000506880 GNPATO15228 680 aa10.9□□□□□ -0.66
PDGFC-205ENST00000506880 BRPF1P55201 1214 aaPredicted RBP10.9□□□□□ -0.66
PDGFC-205ENST00000506880 DUSP27Q5VZP5 1158 aa10.9□□□□□ -0.66
PDGFC-205ENST00000506880 NARFQ9UHQ1 456 aa10.9□□□□□ -0.66
PDGFC-205ENST00000506880 RNF123Q5XPI4 1314 aa10.89□□□□□ -0.67
PDGFC-205ENST00000506880 PNPLA7Q6ZV29 1317 aa10.89□□□□□ -0.67
PDGFC-205ENST00000506880 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.89□□□□□ -0.67
PDGFC-205ENST00000506880 RFC4P35249 363 aa10.89□□□□□ -0.67
PDGFC-205ENST00000506880 ALDH1L2Q3SY69 923 aa10.89□□□□□ -0.67
PDGFC-205ENST00000506880 HSP90AB3PQ58FF7 597 aa10.89□□□□□ -0.67
PDGFC-205ENST00000506880 STK31Q9BXU1 1019 aa10.89□□□□□ -0.67
PDGFC-205ENST00000506880 ANO8Q9HCE9 1232 aaPredicted RBP10.89□□□□□ -0.67
PDGFC-205ENST00000506880 PDZRN3Q9UPQ7 1066 aa10.89□□□□□ -0.67
PDGFC-205ENST00000506880 USP42Q9H9J4 1324 aaKnown RBP10.88□□□□□ -0.67
PDGFC-205ENST00000506880 KCNQ3O43525 872 aa10.88□□□□□ -0.67
PDGFC-205ENST00000506880 ZPR1O75312 459 aa10.88□□□□□ -0.67
PDGFC-205ENST00000506880 HNRNPUQ00839 825 aaKnown RBP eCLIP10.88□□□□□ -0.67
PDGFC-205ENST00000506880 ZNF827Q17R98 1081 aa10.88□□□□□ -0.67
PDGFC-205ENST00000506880 TWISTNBQ3B726 338 aaPredicted RBP10.88□□□□□ -0.67
PDGFC-205ENST00000506880 HDGFL1Q5TGJ6 251 aa10.88□□□□□ -0.67
PDGFC-205ENST00000506880 SPON1Q9HCB6 807 aa10.88□□□□□ -0.67
PDGFC-205ENST00000506880 LAS1LQ9Y4W2 734 aaKnown RBP10.88□□□□□ -0.67
PDGFC-205ENST00000506880 USP16Q9Y5T5 823 aa10.88□□□□□ -0.67
PDGFC-205ENST00000506880 DDX58O95786 925 aaKnown RBP10.87□□□□□ -0.67
PDGFC-205ENST00000506880 HSP90B1P14625 803 aaKnown RBP10.87□□□□□ -0.67
PDGFC-205ENST00000506880 ZBTB1Q9Y2K1 713 aa10.87□□□□□ -0.67
PDGFC-205ENST00000506880 NUP98P52948 1817 aa10.86□□□□□ -0.67
PDGFC-205ENST00000506880 ATP10DQ9P241 1426 aa10.86□□□□□ -0.67
PDGFC-205ENST00000506880 VAMP4O75379 141 aa10.86□□□□□ -0.67
PDGFC-205ENST00000506880 POLD1P28340 1107 aa10.86□□□□□ -0.67
PDGFC-205ENST00000506880 KIF6Q6ZMV9 814 aa10.86□□□□□ -0.67
PDGFC-205ENST00000506880 ARHGEF1Q92888 912 aaKnown RBP10.86□□□□□ -0.67
PDGFC-205ENST00000506880 MIS18AQ9NYP9 233 aa10.86□□□□□ -0.67
PDGFC-205ENST00000506880 ANKRD36CQ5JPF3 1778 aa10.85□□□□□ -0.67
PDGFC-205ENST00000506880 NRXN2Q9P2S2 1712 aa10.85□□□□□ -0.67
PDGFC-205ENST00000506880 TRIM28Q13263 835 aaKnown RBP10.85□□□□□ -0.67
PDGFC-205ENST00000506880 R3HDM1Q15032 1099 aaKnown RBP10.85□□□□□ -0.67
PDGFC-205ENST00000506880 LRP10Q7Z4F1 713 aa10.85□□□□□ -0.67
PDGFC-205ENST00000506880 COL23A1Q86Y22 540 aaPredicted RBP10.85□□□□□ -0.67
PDGFC-205ENST00000506880 KIF13BQ9NQT8 1826 aa10.85□□□□□ -0.67
PDGFC-205ENST00000506880 PTPRCP08575 1304 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 MAP3K15Q6ZN16 1313 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 RIC1Q4ADV7 1423 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 A1BGP04217 495 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 PDIA6Q15084 440 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 PARP10Q53GL7 1025 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 DZIP3Q86Y13 1208 aaKnown RBP10.84□□□□□ -0.67
PDGFC-205ENST00000506880 C8orf58Q8NAV2 365 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 PLBD2Q8NHP8 589 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 KIF16BQ96L93 1317 aa10.84□□□□□ -0.67
PDGFC-205ENST00000506880 CARMIL3Q8ND23 1372 aa10.83□□□□□ -0.68
PDGFC-205ENST00000506880 NBPF26B4DH59 902 aa10.83□□□□□ -0.68
PDGFC-205ENST00000506880 GYS1P13807 737 aa10.83□□□□□ -0.68
PDGFC-205ENST00000506880 CANXP27824 592 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms