RNA–Protein interactions for RNA: ENST00000505937.2

PCDH1-205, Transcript of protocadherin 1, humanhuman

TSL 5

Gene PCDH1, Length 825 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-205ENST00000505937 TJP1Q07157 1748 aa20.33■□□□□ 0.84
PCDH1-205ENST00000505937 SNRPA1P09661 255 aaKnown RBP20.32■□□□□ 0.84
PCDH1-205ENST00000505937 NLGN1Q8N2Q7 840 aa20.32■□□□□ 0.84
PCDH1-205ENST00000505937 UBR2Q8IWV8 1755 aa20.31■□□□□ 0.84
PCDH1-205ENST00000505937 MIS18AQ9NYP9 233 aa20.31■□□□□ 0.84
PCDH1-205ENST00000505937 ZBTB1Q9Y2K1 713 aa20.31■□□□□ 0.84
PCDH1-205ENST00000505937 SOS1Q07889 1333 aaPredicted RBP20.3■□□□□ 0.84
PCDH1-205ENST00000505937 ZPR1O75312 459 aa20.3■□□□□ 0.84
PCDH1-205ENST00000505937 CANXP27824 592 aaKnown RBP20.3■□□□□ 0.84
PCDH1-205ENST00000505937 SYT17Q9BSW7 474 aa20.3■□□□□ 0.84
PCDH1-205ENST00000505937 TSPYL4Q9UJ04 414 aa20.29■□□□□ 0.84
PCDH1-205ENST00000505937 DLG5Q8TDM6 1919 aa20.28■□□□□ 0.84
PCDH1-205ENST00000505937 A0A087WZG4 1122 aa20.28■□□□□ 0.84
PCDH1-205ENST00000505937 CCDC184Q52MB2 194 aa20.28■□□□□ 0.84
PCDH1-205ENST00000505937 BABAM1Q9NWV8 329 aa20.28■□□□□ 0.84
PCDH1-205ENST00000505937 MYH14Q7Z406 1995 aaKnown RBP20.28■□□□□ 0.84
PCDH1-205ENST00000505937 COL15A1P39059 1388 aa20.27■□□□□ 0.84
PCDH1-205ENST00000505937 APAF1O14727 1248 aa20.27■□□□□ 0.84
PCDH1-205ENST00000505937 ZNF330Q9Y3S2 320 aaPredicted RBP20.27■□□□□ 0.84
PCDH1-205ENST00000505937 USP42Q9H9J4 1324 aaKnown RBP20.27■□□□□ 0.83
PCDH1-205ENST00000505937 MMP10P09238 476 aa20.26■□□□□ 0.83
PCDH1-205ENST00000505937 GYS1P13807 737 aa20.26■□□□□ 0.83
PCDH1-205ENST00000505937 COL24A1Q17RW2 1714 aa20.25■□□□□ 0.83
PCDH1-205ENST00000505937 IL6STP40189 918 aaPredicted RBP20.25■□□□□ 0.83
PCDH1-205ENST00000505937 EIF5P55010 431 aaKnown RBP20.25■□□□□ 0.83
PCDH1-205ENST00000505937 SRP68Q9UHB9 627 aaKnown RBP20.25■□□□□ 0.83
PCDH1-205ENST00000505937 NARFQ9UHQ1 456 aa20.25■□□□□ 0.83
PCDH1-205ENST00000505937 USP16Q9Y5T5 823 aa20.25■□□□□ 0.83
PCDH1-205ENST00000505937 A1BGP04217 495 aa20.24■□□□□ 0.83
PCDH1-205ENST00000505937 EIF4A1P60842 406 aaKnown RBP20.24■□□□□ 0.83
PCDH1-205ENST00000505937 CALD1Q05682 793 aaKnown RBP20.24■□□□□ 0.83
PCDH1-205ENST00000505937 TRIM35Q9UPQ4 493 aa20.24■□□□□ 0.83
PCDH1-205ENST00000505937 CD2APQ9Y5K6 639 aa20.24■□□□□ 0.83
PCDH1-205ENST00000505937 PARP3Q9Y6F1 533 aa20.24■□□□□ 0.83
PCDH1-205ENST00000505937 USPL1Q5W0Q7 1092 aa20.23■□□□□ 0.83
PCDH1-205ENST00000505937 PRAMEF22A3QJZ6 481 aa20.22■□□□□ 0.83
PCDH1-205ENST00000505937 GIGYF1O75420 1035 aaPredicted RBP20.22■□□□□ 0.83
PCDH1-205ENST00000505937 LAS1LQ9Y4W2 734 aaKnown RBP20.22■□□□□ 0.83
PCDH1-205ENST00000505937 FKBP8Q14318 412 aa20.21■□□□□ 0.83
PCDH1-205ENST00000505937 CHL1O00533 1208 aa20.19■□□□□ 0.82
PCDH1-205ENST00000505937 C4AP0C0L4 1744 aa20.19■□□□□ 0.82
PCDH1-205ENST00000505937 CFAP44Q96MT7 982 aa20.18■□□□□ 0.82
PCDH1-205ENST00000505937 TBC1D2BQ9UPU7 963 aa20.18■□□□□ 0.82
PCDH1-205ENST00000505937 KDM3BQ7LBC6 1761 aa20.18■□□□□ 0.82
PCDH1-205ENST00000505937 DZIP3Q86Y13 1208 aaKnown RBP20.17■□□□□ 0.82
PCDH1-205ENST00000505937 NLGN2Q8NFZ4 835 aa20.17■□□□□ 0.82
PCDH1-205ENST00000505937 PIP4K2AP48426 406 aaPredicted RBP20.16■□□□□ 0.82
PCDH1-205ENST00000505937 GNAI1P63096 354 aa20.16■□□□□ 0.82
PCDH1-205ENST00000505937 GPR162Q16538 588 aa20.16■□□□□ 0.82
PCDH1-205ENST00000505937 FAM9BQ8IZU0 186 aa20.16■□□□□ 0.82
PCDH1-205ENST00000505937 TM4SF1P30408 202 aa20.15■□□□□ 0.82
PCDH1-205ENST00000505937 PELP1Q8IZL8 1130 aaKnown RBP20.15■□□□□ 0.82
PCDH1-205ENST00000505937 IFT57Q9NWB7 429 aa20.15■□□□□ 0.82
PCDH1-205ENST00000505937 ZNF652Q9Y2D9 606 aa20.15■□□□□ 0.82
PCDH1-205ENST00000505937 ERBB4Q15303 1308 aa20.15■□□□□ 0.82
PCDH1-205ENST00000505937 NBPF26B4DH59 902 aa20.14■□□□□ 0.81
PCDH1-205ENST00000505937 DDR1Q08345 913 aa20.14■□□□□ 0.81
PCDH1-205ENST00000505937 NFIXQ14938 502 aa20.14■□□□□ 0.81
PCDH1-205ENST00000505937 NBPF10Q6P3W6 841 aaKnown RBP20.14■□□□□ 0.81
PCDH1-205ENST00000505937 NBPF15Q8N660 670 aa20.14■□□□□ 0.81
PCDH1-205ENST00000505937 BCL2L12Q9HB09 334 aa20.14■□□□□ 0.81
PCDH1-205ENST00000505937 EIF2S2P20042 333 aaKnown RBP20.13■□□□□ 0.81
PCDH1-205ENST00000505937 CCDC27Q2M243 656 aa20.13■□□□□ 0.81
PCDH1-205ENST00000505937 NCBP3Q53F19 620 aaKnown RBP20.13■□□□□ 0.81
PCDH1-205ENST00000505937 POLRMTO00411 1230 aaKnown RBP20.12■□□□□ 0.81
PCDH1-205ENST00000505937 CAMTA2O94983 1202 aa20.12■□□□□ 0.81
PCDH1-205ENST00000505937 BICDL1Q6ZP65 573 aa20.12■□□□□ 0.81
PCDH1-205ENST00000505937 MBIPQ9NS73 344 aa20.12■□□□□ 0.81
PCDH1-205ENST00000505937 C10orf71Q711Q0 1435 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 RGL2O15211 777 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 HOXB7P09629 217 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 TGFB2P61812 414 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 CLEC4GQ6UXB4 293 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 KIF6Q6ZMV9 814 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 NGEFQ8N5V2 710 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 SETDB2Q96T68 719 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 LAMB4A4D0S4 1761 aa20.11■□□□□ 0.81
PCDH1-205ENST00000505937 NPHP1O15259 732 aa20.1■□□□□ 0.81
PCDH1-205ENST00000505937 SERPINB2P05120 415 aa20.1■□□□□ 0.81
PCDH1-205ENST00000505937 ZNF853P0CG23 659 aa20.1■□□□□ 0.81
PCDH1-205ENST00000505937 MYL6BP14649 208 aa20.1■□□□□ 0.81
PCDH1-205ENST00000505937 TBC1D9BQ66K14 1250 aa20.09■□□□□ 0.81
PCDH1-205ENST00000505937 WWC1Q8IX03 1113 aa20.09■□□□□ 0.81
PCDH1-205ENST00000505937 CARMIL3Q8ND23 1372 aa20.08■□□□□ 0.81
PCDH1-205ENST00000505937 SENP3-EIF4A1A0A087X0R7 540 aa20.08■□□□□ 0.81
PCDH1-205ENST00000505937 GRIN3BO60391 1043 aa20.08■□□□□ 0.81
PCDH1-205ENST00000505937 CHMP4AQ9BY43 222 aa20.08■□□□□ 0.81
PCDH1-205ENST00000505937 CCER2I3L3R5 266 aa20.07■□□□□ 0.8
PCDH1-205ENST00000505937 KRT24Q2M2I5 525 aa20.07■□□□□ 0.8
PCDH1-205ENST00000505937 HDGFL1Q5TGJ6 251 aa20.07■□□□□ 0.8
PCDH1-205ENST00000505937 DUSP27Q5VZP5 1158 aa20.07■□□□□ 0.8
PCDH1-205ENST00000505937 NECTIN2Q92692 538 aa20.07■□□□□ 0.8
PCDH1-205ENST00000505937 SCN7AQ01118 1682 aa20.07■□□□□ 0.8
PCDH1-205ENST00000505937 IL16Q14005 1332 aa20.06■□□□□ 0.8
PCDH1-205ENST00000505937 ERVV-1B6SEH8 477 aa20.06■□□□□ 0.8
PCDH1-205ENST00000505937 SALL2Q9Y467 1007 aaPredicted RBP20.06■□□□□ 0.8
PCDH1-205ENST00000505937 MAP3K15Q6ZN16 1313 aa20.05■□□□□ 0.8
PCDH1-205ENST00000505937 PXDNLA1KZ92 1463 aa20.05■□□□□ 0.8
PCDH1-205ENST00000505937 A0A0G2JLW4 131 aa20.04■□□□□ 0.8
PCDH1-205ENST00000505937 DPEP1P16444 411 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms