RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	DBN1	Q16643	649 aa		11.53	□□□□□ -0.56
SF3B1-212	ENST00000496458	AIDA	Q96BJ3	306 aa		11.53	□□□□□ -0.56
SF3B1-212	ENST00000496458	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	11.53	□□□□□ -0.56
SF3B1-212	ENST00000496458	WIPF1	O43516	503 aa		11.52	□□□□□ -0.57
SF3B1-212	ENST00000496458	MSX1	P28360	303 aa		11.52	□□□□□ -0.57
SF3B1-212	ENST00000496458	PARP3	Q9Y6F1	533 aa		11.52	□□□□□ -0.57
SF3B1-212	ENST00000496458		H7C1W4	665 aa		11.51	□□□□□ -0.57
SF3B1-212	ENST00000496458	RUBCNL	Q9H714	662 aa		11.51	□□□□□ -0.57
SF3B1-212	ENST00000496458	NBPF1	Q3BBV0	1214 aa		11.5	□□□□□ -0.57
SF3B1-212	ENST00000496458	ZDHHC1	Q8WTX9	485 aa		11.5	□□□□□ -0.57
SF3B1-212	ENST00000496458	GMCL1	Q96IK5	515 aa		11.5	□□□□□ -0.57
SF3B1-212	ENST00000496458	ARX	Q96QS3	562 aa		11.5	□□□□□ -0.57
SF3B1-212	ENST00000496458	NUCKS1	Q9H1E3	243 aa	Known RBP	11.5	□□□□□ -0.57
SF3B1-212	ENST00000496458	LGR5	O75473	907 aa		11.49	□□□□□ -0.57
SF3B1-212	ENST00000496458	CSB-PGBD3	P0DP91	1061 aa		11.49	□□□□□ -0.57
SF3B1-212	ENST00000496458	PGBD3	Q8N328	593 aa		11.49	□□□□□ -0.57
SF3B1-212	ENST00000496458	NOVA2	Q9UNW9	492 aa	Known RBP	11.49	□□□□□ -0.57
SF3B1-212	ENST00000496458	GPR25	O00155	361 aa		11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	ATP4A	P20648	1035 aa		11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	SRPK2	P78362	688 aa	Known RBP	11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	TEAD4	Q15561	434 aa		11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	L3MBTL2	Q969R5	705 aa		11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	GTPBP3	Q969Y2	492 aa	Known RBP	11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	HINFP	Q9BQA5	517 aa		11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	ZNF232	Q9UNY5	417 aa		11.48	□□□□□ -0.57
SF3B1-212	ENST00000496458	THBS1	P07996	1170 aa		11.47	□□□□□ -0.57
SF3B1-212	ENST00000496458	NOS2	P35228	1153 aa		11.47	□□□□□ -0.57
SF3B1-212	ENST00000496458	PSMA6	P60900	246 aa	Known RBP	11.47	□□□□□ -0.57
SF3B1-212	ENST00000496458	FAM200A	Q8TCP9	573 aa		11.47	□□□□□ -0.57
SF3B1-212	ENST00000496458	PBXIP1	Q96AQ6	731 aa		11.47	□□□□□ -0.57
SF3B1-212	ENST00000496458	SERTM1	A2A2V5	107 aa		11.46	□□□□□ -0.57
SF3B1-212	ENST00000496458	TAT	P17735	454 aa	Predicted RBP	11.46	□□□□□ -0.57
SF3B1-212	ENST00000496458	TXLNA	P40222	546 aa		11.46	□□□□□ -0.57
SF3B1-212	ENST00000496458	KRT76	Q01546	638 aa		11.46	□□□□□ -0.57
SF3B1-212	ENST00000496458	RNFT1	Q5M7Z0	435 aa		11.46	□□□□□ -0.57
SF3B1-212	ENST00000496458	SH3PXD2A	Q5TCZ1	1133 aa		11.46	□□□□□ -0.57
SF3B1-212	ENST00000496458	C1orf216	Q8TAB5	229 aa		11.46	□□□□□ -0.57
SF3B1-212	ENST00000496458	ZDHHC3	Q9NYG2	299 aa		11.46	□□□□□ -0.57
SF3B1-212	ENST00000496458	SUPT5H	O00267	1087 aa	Known RBP	11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	PPP1R12B	O60237	982 aa	Predicted RBP	11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	EFHC2	Q5JST6	749 aa		11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	FOXR1	Q6PIV2	292 aa		11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	SCG3	Q8WXD2	468 aa	Known RBP	11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	CNTNAP3B	Q96NU0	1288 aa		11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	CNTNAP3	Q9BZ76	1288 aa		11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	CRISPLD1	Q9H336	500 aa		11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	CHMP3	Q9Y3E7	222 aa		11.45	□□□□□ -0.58
SF3B1-212	ENST00000496458	EML1	O00423	815 aa		11.44	□□□□□ -0.58
SF3B1-212	ENST00000496458	C21orf2	O43822	256 aa		11.44	□□□□□ -0.58
SF3B1-212	ENST00000496458	ARSJ	Q5FYB0	599 aa	Predicted RBP	11.44	□□□□□ -0.58
SF3B1-212	ENST00000496458	ZMIZ1	Q9ULJ6	1067 aa		11.44	□□□□□ -0.58
SF3B1-212	ENST00000496458	ATAD2	Q6PL18	1390 aa		11.43	□□□□□ -0.58
SF3B1-212	ENST00000496458	LBR	Q14739	615 aa	Known RBP	11.43	□□□□□ -0.58
SF3B1-212	ENST00000496458	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.43	□□□□□ -0.58
SF3B1-212	ENST00000496458	TRERF1	Q96PN7	1200 aa		11.43	□□□□□ -0.58
SF3B1-212	ENST00000496458	ATG7	O95352	703 aa		11.42	□□□□□ -0.58
SF3B1-212	ENST00000496458	GAS6	Q14393	721 aa		11.42	□□□□□ -0.58
SF3B1-212	ENST00000496458	STK32A	Q8WU08	396 aa		11.42	□□□□□ -0.58
SF3B1-212	ENST00000496458	INSM1	Q01101	510 aa	Predicted RBP	11.41	□□□□□ -0.58
SF3B1-212	ENST00000496458	ELOA	Q14241	798 aa	Known RBP	11.41	□□□□□ -0.58
SF3B1-212	ENST00000496458	BICDL1	Q6ZP65	573 aa		11.41	□□□□□ -0.58
SF3B1-212	ENST00000496458	GAS2L2	Q8NHY3	880 aa		11.41	□□□□□ -0.58
SF3B1-212	ENST00000496458		A0A1W2PNR3	127 aa		11.4	□□□□□ -0.58
SF3B1-212	ENST00000496458	UBAP2L	Q14157	1087 aa	Known RBP	11.4	□□□□□ -0.58
SF3B1-212	ENST00000496458	ZIC5	Q96T25	663 aa		11.4	□□□□□ -0.58
SF3B1-212	ENST00000496458	HCN4	Q9Y3Q4	1203 aa		11.4	□□□□□ -0.58
SF3B1-212	ENST00000496458	HIRA	P54198	1017 aa	Predicted RBP	11.39	□□□□□ -0.59
SF3B1-212	ENST00000496458	IGFBP4	P22692	258 aa		11.38	□□□□□ -0.59
SF3B1-212	ENST00000496458	POTEA	Q6S8J7	498 aa		11.38	□□□□□ -0.59
SF3B1-212	ENST00000496458	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.38	□□□□□ -0.59
SF3B1-212	ENST00000496458	PHACTR1	Q9C0D0	580 aa		11.38	□□□□□ -0.59
SF3B1-212	ENST00000496458	GJA3	Q9Y6H8	435 aa		11.38	□□□□□ -0.59
SF3B1-212	ENST00000496458	ACIN1	Q9UKV3	1341 aa	Known RBP	11.37	□□□□□ -0.59
SF3B1-212	ENST00000496458	NLRP8	Q86W28	1048 aa		11.37	□□□□□ -0.59
SF3B1-212	ENST00000496458	STAG2	Q8N3U4	1231 aa		11.37	□□□□□ -0.59
SF3B1-212	ENST00000496458	RHPN1	Q8TCX5	695 aa		11.37	□□□□□ -0.59
SF3B1-212	ENST00000496458	SWI5	Q1ZZU3	235 aa		11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	TMEM164	Q5U3C3	297 aa		11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	FIGNL1	Q6PIW4	674 aa		11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	ABHD17A	Q96GS6	310 aa		11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	NGLY1	Q96IV0	654 aa		11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	ARID3A	Q99856	593 aa		11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	ZCCHC2	Q9C0B9	1178 aa	Known RBP	11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	MBIP	Q9NS73	344 aa		11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	PHF24	Q9UPV7	400 aa		11.36	□□□□□ -0.59
SF3B1-212	ENST00000496458	LOR	P23490	312 aa	Predicted RBP	11.35	□□□□□ -0.59
SF3B1-212	ENST00000496458	WEE1	P30291	646 aa		11.35	□□□□□ -0.59
SF3B1-212	ENST00000496458	ZSCAN1	Q8NBB4	408 aa		11.35	□□□□□ -0.59
SF3B1-212	ENST00000496458	CFHR5	Q9BXR6	569 aa		11.35	□□□□□ -0.59
SF3B1-212	ENST00000496458	BNIP3L	O60238	219 aa		11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	MX2	P20592	715 aa		11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	FAM69C	Q0P6D2	419 aa		11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	C1orf53	Q5VUE5	145 aa		11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	LRRC69	Q6ZNQ3	347 aa		11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	ALDH16A1	Q8IZ83	802 aa		11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	KLRG1	Q96E93	195 aa		11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	PRIMPOL	Q96LW4	560 aa		11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.34	□□□□□ -0.59
SF3B1-212	ENST00000496458	PCDHGC4	Q9Y5F7	938 aa		11.34	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms