RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	CANX	P27824	592 aa	Known RBP	12.87	□□□□□ -0.35
CALD1-223	ENST00000496024	SLC16A10	Q8TF71	515 aa		12.87	□□□□□ -0.35
CALD1-223	ENST00000496024	ZNF330	Q9Y3S2	320 aa	Predicted RBP	12.87	□□□□□ -0.35
CALD1-223	ENST00000496024	SALL2	Q9Y467	1007 aa	Predicted RBP	12.87	□□□□□ -0.35
CALD1-223	ENST00000496024	PTGER2	P43116	358 aa		12.86	□□□□□ -0.35
CALD1-223	ENST00000496024	ARHGEF1	Q92888	912 aa	Known RBP	12.86	□□□□□ -0.35
CALD1-223	ENST00000496024	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.86	□□□□□ -0.35
CALD1-223	ENST00000496024	ZBTB1	Q9Y2K1	713 aa		12.86	□□□□□ -0.35
CALD1-223	ENST00000496024	USP16	Q9Y5T5	823 aa		12.86	□□□□□ -0.35
CALD1-223	ENST00000496024	KDM3B	Q7LBC6	1761 aa		12.86	□□□□□ -0.35
CALD1-223	ENST00000496024	CIC	Q96RK0	1608 aa	Predicted RBP	12.85	□□□□□ -0.35
CALD1-223	ENST00000496024	A1BG	P04217	495 aa		12.85	□□□□□ -0.35
CALD1-223	ENST00000496024	SNRPA1	P09661	255 aa	Known RBP	12.85	□□□□□ -0.35
CALD1-223	ENST00000496024	RFC4	P35249	363 aa		12.85	□□□□□ -0.35
CALD1-223	ENST00000496024	PIP4K2A	P48426	406 aa	Predicted RBP	12.85	□□□□□ -0.35
CALD1-223	ENST00000496024	POLD1	P28340	1107 aa		12.84	□□□□□ -0.35
CALD1-223	ENST00000496024	EIF4A1	P60842	406 aa	Known RBP	12.84	□□□□□ -0.35
CALD1-223	ENST00000496024	KLHL34	Q8N239	644 aa		12.84	□□□□□ -0.35
CALD1-223	ENST00000496024	SRP68	Q9UHB9	627 aa	Known RBP	12.84	□□□□□ -0.35
CALD1-223	ENST00000496024	ADRA2B	P18089	450 aa		12.83	□□□□□ -0.36
CALD1-223	ENST00000496024	MIER1	Q8N108	512 aa		12.83	□□□□□ -0.36
CALD1-223	ENST00000496024	ARX	Q96QS3	562 aa		12.83	□□□□□ -0.36
CALD1-223	ENST00000496024	SOS1	Q07889	1333 aa	Predicted RBP	12.83	□□□□□ -0.36
CALD1-223	ENST00000496024	CCER2	I3L3R5	266 aa		12.82	□□□□□ -0.36
CALD1-223	ENST00000496024	CHL1	O00533	1208 aa		12.82	□□□□□ -0.36
CALD1-223	ENST00000496024	NPM2	Q86SE8	214 aa	Known RBP	12.82	□□□□□ -0.36
CALD1-223	ENST00000496024	SGIP1	Q9BQI5	828 aa		12.82	□□□□□ -0.36
CALD1-223	ENST00000496024	C4A	P0C0L4	1744 aa		12.82	□□□□□ -0.36
CALD1-223	ENST00000496024	COL15A1	P39059	1388 aa		12.81	□□□□□ -0.36
CALD1-223	ENST00000496024	ZPR1	O75312	459 aa		12.81	□□□□□ -0.36
CALD1-223	ENST00000496024	GIGYF1	O75420	1035 aa	Predicted RBP	12.81	□□□□□ -0.36
CALD1-223	ENST00000496024	KRT24	Q2M2I5	525 aa		12.81	□□□□□ -0.36
CALD1-223	ENST00000496024	USPL1	Q5W0Q7	1092 aa		12.81	□□□□□ -0.36
CALD1-223	ENST00000496024	BABAM1	Q9NWV8	329 aa		12.81	□□□□□ -0.36
CALD1-223	ENST00000496024	GYS1	P13807	737 aa		12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	EIF2S2	P20042	333 aa	Known RBP	12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	EIF5	P55010	431 aa	Known RBP	12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	CALD1	Q05682	793 aa	Known RBP	12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	WWC1	Q8IX03	1113 aa		12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	NGEF	Q8N5V2	710 aa		12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	NECTIN2	Q92692	538 aa		12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	CFAP44	Q96MT7	982 aa		12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	MBIP	Q9NS73	344 aa		12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	TBC1D2B	Q9UPU7	963 aa		12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	USP42	Q9H9J4	1324 aa	Known RBP	12.8	□□□□□ -0.36
CALD1-223	ENST00000496024	NBPF26	B4DH59	902 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	MMP10	P09238	476 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	IL6ST	P40189	918 aa	Predicted RBP	12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	GNAI1	P63096	354 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	FKBP8	Q14318	412 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	NBPF10	Q6P3W6	841 aa	Known RBP	12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	NLGN1	Q8N2Q7	840 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	NBPF15	Q8N660	670 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	IFT57	Q9NWB7	429 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	COL24A1	Q17RW2	1714 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024	LAMB4	A4D0S4	1761 aa		12.79	□□□□□ -0.36
CALD1-223	ENST00000496024		A0A087WZG4	1122 aa		12.78	□□□□□ -0.36
CALD1-223	ENST00000496024	MYL6B	P14649	208 aa		12.78	□□□□□ -0.36
CALD1-223	ENST00000496024	CCDC27	Q2M243	656 aa		12.78	□□□□□ -0.36
CALD1-223	ENST00000496024	NARF	Q9UHQ1	456 aa		12.78	□□□□□ -0.36
CALD1-223	ENST00000496024	ELL2	O00472	640 aa	Predicted RBP	12.77	□□□□□ -0.37
CALD1-223	ENST00000496024	ZNF853	P0CG23	659 aa		12.77	□□□□□ -0.37
CALD1-223	ENST00000496024	DZIP3	Q86Y13	1208 aa	Known RBP	12.77	□□□□□ -0.37
CALD1-223	ENST00000496024	TSR2	Q969E8	191 aa	Known RBP	12.77	□□□□□ -0.37
CALD1-223	ENST00000496024	ANXA1	P04083	346 aa		12.76	□□□□□ -0.37
CALD1-223	ENST00000496024	BICDL1	Q6ZP65	573 aa		12.76	□□□□□ -0.37
CALD1-223	ENST00000496024	SYT17	Q9BSW7	474 aa		12.76	□□□□□ -0.37
CALD1-223	ENST00000496024	BCL2L12	Q9HB09	334 aa		12.76	□□□□□ -0.37
CALD1-223	ENST00000496024	PARP3	Q9Y6F1	533 aa		12.76	□□□□□ -0.37
CALD1-223	ENST00000496024	DUSP27	Q5VZP5	1158 aa		12.75	□□□□□ -0.37
CALD1-223	ENST00000496024	DDR1	Q08345	913 aa		12.74	□□□□□ -0.37
CALD1-223	ENST00000496024	PROSER3	Q2NL68	480 aa		12.74	□□□□□ -0.37
CALD1-223	ENST00000496024	HDGFL1	Q5TGJ6	251 aa		12.74	□□□□□ -0.37
CALD1-223	ENST00000496024	NLGN2	Q8NFZ4	835 aa		12.74	□□□□□ -0.37
CALD1-223	ENST00000496024	CAMTA2	O94983	1202 aa		12.73	□□□□□ -0.37
CALD1-223	ENST00000496024	NFIX	Q14938	502 aa		12.73	□□□□□ -0.37
CALD1-223	ENST00000496024	NCBP3	Q53F19	620 aa	Known RBP	12.73	□□□□□ -0.37
CALD1-223	ENST00000496024	TBC1D9B	Q66K14	1250 aa		12.73	□□□□□ -0.37
CALD1-223	ENST00000496024	TTLL7	Q6ZT98	887 aa		12.73	□□□□□ -0.37
CALD1-223	ENST00000496024	WDR63	Q8IWG1	891 aa		12.73	□□□□□ -0.37
CALD1-223	ENST00000496024	C8orf58	Q8NAV2	365 aa		12.73	□□□□□ -0.37
CALD1-223	ENST00000496024	IL16	Q14005	1332 aa		12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	TM4SF1	P30408	202 aa		12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	AIMP1	Q12904	312 aa	Known RBP	12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	PDIA6	Q15084	440 aa		12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	KIF6	Q6ZMV9	814 aa		12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	PELP1	Q8IZL8	1130 aa	Known RBP	12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	TSPYL6	Q8N831	410 aa		12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	CHPF2	Q9P2E5	772 aa		12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	WWC3	Q9ULE0	1092 aa		12.72	□□□□□ -0.37
CALD1-223	ENST00000496024	SCN7A	Q01118	1682 aa		12.71	□□□□□ -0.37
CALD1-223	ENST00000496024	ERBB4	Q15303	1308 aa		12.71	□□□□□ -0.37
CALD1-223	ENST00000496024	POLRMT	O00411	1230 aa	Known RBP	12.71	□□□□□ -0.37
CALD1-223	ENST00000496024	HLF	Q16534	295 aa		12.71	□□□□□ -0.37
CALD1-223	ENST00000496024	ZBTB3	Q9H5J0	574 aa		12.71	□□□□□ -0.37
CALD1-223	ENST00000496024	BCOR	Q6W2J9	1755 aa		12.71	□□□□□ -0.38
CALD1-223	ENST00000496024	FANCI	Q9NVI1	1328 aa		12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	AFDN	P55196	1824 aa	Known RBP	12.7	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms