RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 MPHOSPH10O00566 681 aaKnown RBP23.33■■□□□ 1.33
RNF40-203ENST00000493683 MAP3K12Q12852 859 aa23.33■■□□□ 1.33
RNF40-203ENST00000493683 CAVIN4Q5BKX8 364 aa23.33■■□□□ 1.33
RNF40-203ENST00000493683 BMP2KLQ5H9B9 411 aa23.33■■□□□ 1.33
RNF40-203ENST00000493683 TNPO1Q92973 898 aaKnown RBP23.33■■□□□ 1.33
RNF40-203ENST00000493683 RBM5P52756 815 aaKnown RBP eCLIP23.33■■□□□ 1.32
RNF40-203ENST00000493683 TMOD2Q9NZR1 351 aa23.33■■□□□ 1.32
RNF40-203ENST00000493683 ERICH4A6NGS2 130 aa23.32■■□□□ 1.32
RNF40-203ENST00000493683 NAIPQ13075 1403 aa23.32■■□□□ 1.32
RNF40-203ENST00000493683 TNNT1P13805 278 aa23.32■■□□□ 1.32
RNF40-203ENST00000493683 EVI5LQ96CN4 794 aa23.32■■□□□ 1.32
RNF40-203ENST00000493683 NEBLO76041 1014 aa23.32■■□□□ 1.32
RNF40-203ENST00000493683 IQCA1Q86XH1 822 aa23.32■■□□□ 1.32
RNF40-203ENST00000493683 TBC1D2Q9BYX2 928 aa23.32■■□□□ 1.32
RNF40-203ENST00000493683 SMC1AQ14683 1233 aaKnown RBP23.32■■□□□ 1.32
RNF40-203ENST00000493683 ZSCAN29Q8IWY8 852 aaPredicted RBP23.32■■□□□ 1.32
RNF40-203ENST00000493683 GIMAP7Q8NHV1 300 aa23.32■■□□□ 1.32
RNF40-203ENST00000493683 KANK3Q6NY19 840 aa23.31■■□□□ 1.32
RNF40-203ENST00000493683 SYNJ1O43426 1573 aa23.31■■□□□ 1.32
RNF40-203ENST00000493683 GOLGA6L10A0A0M3HER8 536 aa23.31■■□□□ 1.32
RNF40-203ENST00000493683 SLC12A7Q9Y666 1083 aa23.31■■□□□ 1.32
RNF40-203ENST00000493683 ALS2CR12Q96Q35 445 aa23.3■■□□□ 1.32
RNF40-203ENST00000493683 SSRP1Q08945 709 aaKnown RBP23.3■■□□□ 1.32
RNF40-203ENST00000493683 CNNM3Q8NE01 707 aa23.3■■□□□ 1.32
RNF40-203ENST00000493683 TAOK3Q9H2K8 898 aa23.3■■□□□ 1.32
RNF40-203ENST00000493683 ZNF213O14771 459 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 MATR3P43243 847 aaKnown RBP eCLIP23.29■■□□□ 1.32
RNF40-203ENST00000493683 USP5P45974 858 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 HYPKQ9NX55 129 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 HMG20BQ9P0W2 317 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 TOP2BQ02880 1626 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 SSFA2P28290 1259 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 CCDC150Q8NCX0 1101 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 PRIMPOLQ96LW4 560 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 FAM114A1Q8IWE2 563 aa23.29■■□□□ 1.32
RNF40-203ENST00000493683 SSR1P43307 286 aaKnown RBP23.28■■□□□ 1.32
RNF40-203ENST00000493683 IFFO1Q0D2I5 559 aa23.28■■□□□ 1.32
RNF40-203ENST00000493683 DNAAF4Q8WXU2 420 aa23.28■■□□□ 1.32
RNF40-203ENST00000493683 BOLA2Q9H3K6 86 aa23.28■■□□□ 1.32
RNF40-203ENST00000493683 AMPD3Q01432 767 aa23.28■■□□□ 1.32
RNF40-203ENST00000493683 NUP88Q99567 741 aaPredicted RBP23.28■■□□□ 1.32
RNF40-203ENST00000493683 PAXBP1Q9Y5B6 917 aa23.28■■□□□ 1.32
RNF40-203ENST00000493683 A0A087WZG4 1122 aa23.28■■□□□ 1.32
RNF40-203ENST00000493683 ABCF2Q9UG63 623 aa23.28■■□□□ 1.32
RNF40-203ENST00000493683 KLHL40Q2TBA0 621 aa23.27■■□□□ 1.32
RNF40-203ENST00000493683 MKNK2Q9HBH9 465 aa23.27■■□□□ 1.32
RNF40-203ENST00000493683 FSIP1Q8NA03 581 aa23.27■■□□□ 1.32
RNF40-203ENST00000493683 EHBP1Q8NDI1 1231 aa23.27■■□□□ 1.32
RNF40-203ENST00000493683 CCDC12Q8WUD4 166 aaPredicted RBP23.27■■□□□ 1.32
RNF40-203ENST00000493683 IL16Q14005 1332 aa23.27■■□□□ 1.32
RNF40-203ENST00000493683 MRC2Q9UBG0 1479 aa23.27■■□□□ 1.32
RNF40-203ENST00000493683 SMARCA5O60264 1052 aaPredicted RBP23.27■■□□□ 1.31
RNF40-203ENST00000493683 UBE2HP62256 183 aa23.27■■□□□ 1.31
RNF40-203ENST00000493683 PPP4R3AQ6IN85 833 aa23.27■■□□□ 1.31
RNF40-203ENST00000493683 KLHL10Q6JEL2 608 aa23.27■■□□□ 1.31
RNF40-203ENST00000493683 STX6O43752 255 aa23.26■■□□□ 1.31
RNF40-203ENST00000493683 USP25Q9UHP3 1055 aa23.26■■□□□ 1.31
RNF40-203ENST00000493683 SLC5A1P13866 664 aa23.26■■□□□ 1.31
RNF40-203ENST00000493683 EHMT1Q9H9B1 1298 aa23.26■■□□□ 1.31
RNF40-203ENST00000493683 POLR3DP05423 398 aaPredicted RBP23.26■■□□□ 1.31
RNF40-203ENST00000493683 DBF4Q9UBU7 674 aaPredicted RBP23.26■■□□□ 1.31
RNF40-203ENST00000493683 CCDC194A0A1B0GVG4 234 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 SLF2Q8IX21 1173 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 ECHDC1Q9NTX5 307 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 GOLGA8AA7E2F4 631 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 GOLGA8BA8MQT2 603 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 IFIT5Q13325 482 aaKnown RBP23.25■■□□□ 1.31
RNF40-203ENST00000493683 TTF1Q15361 905 aaPredicted RBP23.25■■□□□ 1.31
RNF40-203ENST00000493683 DYNC1I1O14576 645 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 CETN1Q12798 172 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 MCM10Q7L590 875 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 LRRC27Q9C0I9 530 aa23.25■■□□□ 1.31
RNF40-203ENST00000493683 ZSCAN16Q9H4T2 348 aaPredicted RBP23.24■■□□□ 1.31
RNF40-203ENST00000493683 STAMBPO95630 424 aa23.24■■□□□ 1.31
RNF40-203ENST00000493683 CCDC178Q5BJE1 867 aa23.24■■□□□ 1.31
RNF40-203ENST00000493683 SMARCC1Q92922 1105 aaPredicted RBP23.24■■□□□ 1.31
RNF40-203ENST00000493683 CATIPQ7Z7H3 387 aa23.23■■□□□ 1.31
RNF40-203ENST00000493683 MYD88Q99836 296 aa23.23■■□□□ 1.31
RNF40-203ENST00000493683 BMS1Q14692 1282 aaKnown RBP23.23■■□□□ 1.31
RNF40-203ENST00000493683 CCDC171Q6TFL3 1326 aa23.23■■□□□ 1.31
RNF40-203ENST00000493683 XPCQ01831 940 aaPredicted RBP23.23■■□□□ 1.31
RNF40-203ENST00000493683 NUTM2BA6NNL0 878 aaPredicted RBP23.23■■□□□ 1.31
RNF40-203ENST00000493683 NUTM2EB1AL46 878 aaPredicted RBP23.23■■□□□ 1.31
RNF40-203ENST00000493683 TUBB4AP04350 444 aa23.23■■□□□ 1.31
RNF40-203ENST00000493683 NUTM2AQ8IVF1 878 aaPredicted RBP23.23■■□□□ 1.31
RNF40-203ENST00000493683 TTC21BQ7Z4L5 1316 aa23.23■■□□□ 1.31
RNF40-203ENST00000493683 MINDY4BA8MYZ0 360 aa23.23■■□□□ 1.31
RNF40-203ENST00000493683 CUL5Q93034 780 aa23.23■■□□□ 1.31
RNF40-203ENST00000493683 GSTTP1A0A1W2PQM5 241 aa23.22■■□□□ 1.31
RNF40-203ENST00000493683 GIGYF2Q6Y7W6 1299 aaKnown RBP23.22■■□□□ 1.31
RNF40-203ENST00000493683 ADCY5O95622 1261 aa23.22■■□□□ 1.31
RNF40-203ENST00000493683 GJB2P29033 226 aa23.22■■□□□ 1.31
RNF40-203ENST00000493683 SNW1Q13573 536 aaKnown RBP23.22■■□□□ 1.31
RNF40-203ENST00000493683 ANAPC15P60006 121 aa23.22■■□□□ 1.31
RNF40-203ENST00000493683 CBX1P83916 185 aa23.22■■□□□ 1.31
RNF40-203ENST00000493683 HOOK3Q86VS8 718 aa23.22■■□□□ 1.31
RNF40-203ENST00000493683 PPP1R1BQ9UD71 204 aaPredicted RBP23.22■■□□□ 1.31
RNF40-203ENST00000493683 EPRSP07814 1512 aaKnown RBP23.22■■□□□ 1.31
RNF40-203ENST00000493683 BAG4O95429 457 aaKnown RBP23.21■■□□□ 1.31
RNF40-203ENST00000493683 ZNF444Q8N0Y2 327 aaPredicted RBP23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms