RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 CRKLP46109 303 aaKnown RBP12.27□□□□□ -0.45
BRCA1-219ENST00000491747 RC3H1Q5TC82 1133 aaKnown RBP12.27□□□□□ -0.45
BRCA1-219ENST00000491747 TTC5Q8N0Z6 440 aa12.27□□□□□ -0.45
BRCA1-219ENST00000491747 TAF7Q15545 349 aaPredicted RBP12.26□□□□□ -0.45
BRCA1-219ENST00000491747 INTS5Q6P9B9 1019 aaKnown RBP12.26□□□□□ -0.45
BRCA1-219ENST00000491747 TRIM35Q9UPQ4 493 aa12.26□□□□□ -0.45
BRCA1-219ENST00000491747 CYP19A1P11511 503 aaPredicted RBP12.26□□□□□ -0.45
BRCA1-219ENST00000491747 HEG1Q9ULI3 1381 aa12.26□□□□□ -0.45
BRCA1-219ENST00000491747 PRAMEF22A3QJZ6 481 aa12.25□□□□□ -0.45
BRCA1-219ENST00000491747 HMGB2P26583 209 aaKnown RBP12.25□□□□□ -0.45
BRCA1-219ENST00000491747 SSFA2P28290 1259 aa12.25□□□□□ -0.45
BRCA1-219ENST00000491747 VSIG10Q8N0Z9 540 aa12.25□□□□□ -0.45
BRCA1-219ENST00000491747 SLC16A10Q8TF71 515 aa12.25□□□□□ -0.45
BRCA1-219ENST00000491747 SENP3-EIF4A1A0A087X0R7 540 aa12.25□□□□□ -0.45
BRCA1-219ENST00000491747 RPS6KA4O75676 772 aa12.25□□□□□ -0.45
BRCA1-219ENST00000491747 APAF1O14727 1248 aa12.24□□□□□ -0.45
BRCA1-219ENST00000491747 MSL1Q68DK7 614 aa12.24□□□□□ -0.45
BRCA1-219ENST00000491747 FLAD1Q8NFF5 587 aa12.24□□□□□ -0.45
BRCA1-219ENST00000491747 RTCBQ9Y3I0 505 aaKnown RBP12.24□□□□□ -0.45
BRCA1-219ENST00000491747 ARHGEF1Q92888 912 aaKnown RBP12.23□□□□□ -0.45
BRCA1-219ENST00000491747 FMNL2Q96PY5 1086 aa12.23□□□□□ -0.45
BRCA1-219ENST00000491747 CCDC87Q9NVE4 849 aa12.23□□□□□ -0.45
BRCA1-219ENST00000491747 TRAPPC3LQ5T215 181 aa12.22□□□□□ -0.45
BRCA1-219ENST00000491747 ZBTB1Q9Y2K1 713 aa12.22□□□□□ -0.45
BRCA1-219ENST00000491747 USP16Q9Y5T5 823 aa12.22□□□□□ -0.45
BRCA1-219ENST00000491747 LAMB4A4D0S4 1761 aa12.22□□□□□ -0.45
BRCA1-219ENST00000491747 LMOD3Q0VAK6 560 aa12.21□□□□□ -0.46
BRCA1-219ENST00000491747 B4GALNT3Q6L9W6 998 aa12.21□□□□□ -0.46
BRCA1-219ENST00000491747 PPP1R1BQ9UD71 204 aaPredicted RBP12.21□□□□□ -0.46
BRCA1-219ENST00000491747 SOS1Q07889 1333 aaPredicted RBP12.21□□□□□ -0.46
BRCA1-219ENST00000491747 A1BGP04217 495 aa12.2□□□□□ -0.46
BRCA1-219ENST00000491747 EIF4A1P60842 406 aaKnown RBP12.2□□□□□ -0.46
BRCA1-219ENST00000491747 ADRA2BP18089 450 aa12.2□□□□□ -0.46
BRCA1-219ENST00000491747 CANXP27824 592 aaKnown RBP12.2□□□□□ -0.46
BRCA1-219ENST00000491747 ARXQ96QS3 562 aa12.2□□□□□ -0.46
BRCA1-219ENST00000491747 SRP68Q9UHB9 627 aaKnown RBP12.2□□□□□ -0.46
BRCA1-219ENST00000491747 STARD3NLO95772 234 aa12.19□□□□□ -0.46
BRCA1-219ENST00000491747 SNRPA1P09661 255 aaKnown RBP12.19□□□□□ -0.46
BRCA1-219ENST00000491747 PIP4K2AP48426 406 aaPredicted RBP12.19□□□□□ -0.46
BRCA1-219ENST00000491747 TEX13AQ9BXU3 409 aaPredicted RBP12.19□□□□□ -0.46
BRCA1-219ENST00000491747 TSPYL4Q9UJ04 414 aa12.19□□□□□ -0.46
BRCA1-219ENST00000491747 GYS1P13807 737 aa12.19□□□□□ -0.46
BRCA1-219ENST00000491747 RFC4P35249 363 aa12.19□□□□□ -0.46
BRCA1-219ENST00000491747 COL15A1P39059 1388 aa12.18□□□□□ -0.46
BRCA1-219ENST00000491747 GIGYF1O75420 1035 aaPredicted RBP12.18□□□□□ -0.46
BRCA1-219ENST00000491747 FHDC1Q9C0D6 1143 aaPredicted RBP12.18□□□□□ -0.46
BRCA1-219ENST00000491747 USP42Q9H9J4 1324 aaKnown RBP12.18□□□□□ -0.46
BRCA1-219ENST00000491747 CHL1O00533 1208 aa12.18□□□□□ -0.46
BRCA1-219ENST00000491747 POLD1P28340 1107 aa12.18□□□□□ -0.46
BRCA1-219ENST00000491747 EIF5P55010 431 aaKnown RBP12.18□□□□□ -0.46
BRCA1-219ENST00000491747 LAS1LQ9Y4W2 734 aaKnown RBP12.18□□□□□ -0.46
BRCA1-219ENST00000491747 NBPF26B4DH59 902 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 KRT24Q2M2I5 525 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 USPL1Q5W0Q7 1092 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 NBPF10Q6P3W6 841 aaKnown RBP12.16□□□□□ -0.46
BRCA1-219ENST00000491747 NBPF15Q8N660 670 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 BABAM1Q9NWV8 329 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 ZNF853P0CG23 659 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 SYT17Q9BSW7 474 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 BCL2L12Q9HB09 334 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 BCORQ6W2J9 1755 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 SCN7AQ01118 1682 aa12.16□□□□□ -0.46
BRCA1-219ENST00000491747 MMP10P09238 476 aa12.15□□□□□ -0.46
BRCA1-219ENST00000491747 IL6STP40189 918 aaPredicted RBP12.15□□□□□ -0.46
BRCA1-219ENST00000491747 CFAP44Q96MT7 982 aa12.15□□□□□ -0.46
BRCA1-219ENST00000491747 NARFQ9UHQ1 456 aa12.15□□□□□ -0.46
BRCA1-219ENST00000491747 ZNF330Q9Y3S2 320 aaPredicted RBP12.15□□□□□ -0.46
BRCA1-219ENST00000491747 NLGN1Q8N2Q7 840 aa12.14□□□□□ -0.47
BRCA1-219ENST00000491747 MBIPQ9NS73 344 aa12.14□□□□□ -0.47
BRCA1-219ENST00000491747 TBC1D2BQ9UPU7 963 aa12.14□□□□□ -0.47
BRCA1-219ENST00000491747 SALL2Q9Y467 1007 aaPredicted RBP12.14□□□□□ -0.47
BRCA1-219ENST00000491747 AFDNP55196 1824 aaKnown RBP12.14□□□□□ -0.47
BRCA1-219ENST00000491747 WWC1Q8IX03 1113 aa12.14□□□□□ -0.47
BRCA1-219ENST00000491747 KLHL34Q8N239 644 aa12.14□□□□□ -0.47
BRCA1-219ENST00000491747 KIF13BQ9NQT8 1826 aa12.14□□□□□ -0.47
BRCA1-219ENST00000491747 ZPR1O75312 459 aa12.13□□□□□ -0.47
BRCA1-219ENST00000491747 CCDC27Q2M243 656 aa12.13□□□□□ -0.47
BRCA1-219ENST00000491747 NLGN2Q8NFZ4 835 aa12.13□□□□□ -0.47
BRCA1-219ENST00000491747 TM4SF1P30408 202 aa12.13□□□□□ -0.47
BRCA1-219ENST00000491747 DDR1Q08345 913 aa12.13□□□□□ -0.47
BRCA1-219ENST00000491747 KIAA1551Q9HCM1 1747 aa12.13□□□□□ -0.47
BRCA1-219ENST00000491747 RNF123Q5XPI4 1314 aa12.12□□□□□ -0.47
BRCA1-219ENST00000491747 IFT57Q9NWB7 429 aa12.12□□□□□ -0.47
BRCA1-219ENST00000491747 A0A087WZG4 1122 aa12.12□□□□□ -0.47
BRCA1-219ENST00000491747 CAMTA2O94983 1202 aa12.12□□□□□ -0.47
BRCA1-219ENST00000491747 EIF2S2P20042 333 aaKnown RBP12.12□□□□□ -0.47
BRCA1-219ENST00000491747 NRXN2Q9P2S2 1712 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 N4BP2Q86UW6 1770 aaPredicted RBP12.11□□□□□ -0.47
BRCA1-219ENST00000491747 GNAI1P63096 354 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 PDIA6Q15084 440 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 NCBP3Q53F19 620 aaKnown RBP12.11□□□□□ -0.47
BRCA1-219ENST00000491747 DZIP3Q86Y13 1208 aaKnown RBP12.11□□□□□ -0.47
BRCA1-219ENST00000491747 NECTIN2Q92692 538 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 NOP58Q9Y2X3 529 aaKnown RBP12.11□□□□□ -0.47
BRCA1-219ENST00000491747 NUP98P52948 1817 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 MYL6BP14649 208 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 NFIXQ14938 502 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 LRP10Q7Z4F1 713 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 NGEFQ8N5V2 710 aa12.11□□□□□ -0.47
BRCA1-219ENST00000491747 CCDC136Q96JN2 1154 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms