RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 ZNF853P0CG23 659 aa24.45■■□□□ 1.5
PTCD3-217ENST00000488801 ADRA2BP18089 450 aa24.45■■□□□ 1.5
PTCD3-217ENST00000488801 EIF4A1P60842 406 aaKnown RBP24.45■■□□□ 1.5
PTCD3-217ENST00000488801 FAM9BQ8IZU0 186 aa24.45■■□□□ 1.5
PTCD3-217ENST00000488801 TEX13AQ9BXU3 409 aaPredicted RBP24.45■■□□□ 1.5
PTCD3-217ENST00000488801 MTFR1LQ9H019 292 aa24.45■■□□□ 1.5
PTCD3-217ENST00000488801 AFDNP55196 1824 aaKnown RBP24.44■■□□□ 1.5
PTCD3-217ENST00000488801 NUP98P52948 1817 aa24.43■■□□□ 1.5
PTCD3-217ENST00000488801 PRAMEF22A3QJZ6 481 aa24.43■■□□□ 1.5
PTCD3-217ENST00000488801 PTGER2P43116 358 aa24.43■■□□□ 1.5
PTCD3-217ENST00000488801 SMIM5Q71RC9 77 aa24.43■■□□□ 1.5
PTCD3-217ENST00000488801 MIER1Q8N108 512 aa24.43■■□□□ 1.5
PTCD3-217ENST00000488801 TSPYL4Q9UJ04 414 aa24.43■■□□□ 1.5
PTCD3-217ENST00000488801 ZBTB1Q9Y2K1 713 aa24.43■■□□□ 1.5
PTCD3-217ENST00000488801 RTCBQ9Y3I0 505 aaKnown RBP24.43■■□□□ 1.5
PTCD3-217ENST00000488801 ZBTB7AO95365 584 aa24.42■■□□□ 1.5
PTCD3-217ENST00000488801 SNRPA1P09661 255 aaKnown RBP24.42■■□□□ 1.5
PTCD3-217ENST00000488801 CFAP44Q96MT7 982 aa24.42■■□□□ 1.5
PTCD3-217ENST00000488801 COL15A1P39059 1388 aa24.42■■□□□ 1.5
PTCD3-217ENST00000488801 NRXN2Q9P2S2 1712 aa24.41■■□□□ 1.5
PTCD3-217ENST00000488801 GIGYF1O75420 1035 aaPredicted RBP24.41■■□□□ 1.5
PTCD3-217ENST00000488801 WWC1Q8IX03 1113 aa24.41■■□□□ 1.5
PTCD3-217ENST00000488801 SPON1Q9HCB6 807 aa24.41■■□□□ 1.5
PTCD3-217ENST00000488801 PHF14O94880 888 aa24.4■■□□□ 1.5
PTCD3-217ENST00000488801 STARD3NLO95772 234 aa24.4■■□□□ 1.5
PTCD3-217ENST00000488801 IFT57Q9NWB7 429 aa24.4■■□□□ 1.5
PTCD3-217ENST00000488801 USP16Q9Y5T5 823 aa24.4■■□□□ 1.5
PTCD3-217ENST00000488801 NGEFQ8N5V2 710 aa24.39■■□□□ 1.49
PTCD3-217ENST00000488801 CALD1Q05682 793 aaKnown RBP24.38■■□□□ 1.49
PTCD3-217ENST00000488801 ARHGEF1Q92888 912 aaKnown RBP24.38■■□□□ 1.49
PTCD3-217ENST00000488801 ANKRD36CQ5JPF3 1778 aa24.38■■□□□ 1.49
PTCD3-217ENST00000488801 KIAA1551Q9HCM1 1747 aa24.38■■□□□ 1.49
PTCD3-217ENST00000488801 EIF5P55010 431 aaKnown RBP24.37■■□□□ 1.49
PTCD3-217ENST00000488801 IL16Q14005 1332 aa24.36■■□□□ 1.49
PTCD3-217ENST00000488801 ZNF521Q96K83 1311 aa24.36■■□□□ 1.49
PTCD3-217ENST00000488801 TRAPPC3LQ5T215 181 aa24.36■■□□□ 1.49
PTCD3-217ENST00000488801 MBIPQ9NS73 344 aa24.36■■□□□ 1.49
PTCD3-217ENST00000488801 USP42Q9H9J4 1324 aaKnown RBP24.35■■□□□ 1.49
PTCD3-217ENST00000488801 GNAI1P63096 354 aa24.35■■□□□ 1.49
PTCD3-217ENST00000488801 ATF5Q9Y2D1 282 aaPredicted RBP24.35■■□□□ 1.49
PTCD3-217ENST00000488801 SENP3-EIF4A1A0A087X0R7 540 aa24.34■■□□□ 1.49
PTCD3-217ENST00000488801 A1BGP04217 495 aa24.34■■□□□ 1.49
PTCD3-217ENST00000488801 IL6STP40189 918 aaPredicted RBP24.34■■□□□ 1.49
PTCD3-217ENST00000488801 BRCA1P38398 1863 aaKnown RBP24.33■■□□□ 1.49
PTCD3-217ENST00000488801 NBPF26B4DH59 902 aa24.33■■□□□ 1.49
PTCD3-217ENST00000488801 NBPF10Q6P3W6 841 aaKnown RBP24.33■■□□□ 1.49
PTCD3-217ENST00000488801 NBPF15Q8N660 670 aa24.33■■□□□ 1.49
PTCD3-217ENST00000488801 GYS1P13807 737 aa24.32■■□□□ 1.48
PTCD3-217ENST00000488801 ERBB4Q15303 1308 aa24.32■■□□□ 1.48
PTCD3-217ENST00000488801 MSH5O43196 834 aa24.31■■□□□ 1.48
PTCD3-217ENST00000488801 HOXB7P09629 217 aa24.31■■□□□ 1.48
PTCD3-217ENST00000488801 CANXP27824 592 aaKnown RBP24.31■■□□□ 1.48
PTCD3-217ENST00000488801 KRT24Q2M2I5 525 aa24.31■■□□□ 1.48
PTCD3-217ENST00000488801 WDR63Q8IWG1 891 aa24.31■■□□□ 1.48
PTCD3-217ENST00000488801 ARFGEF2Q9Y6D5 1785 aa24.3■■□□□ 1.48
PTCD3-217ENST00000488801 LAS1LQ9Y4W2 734 aaKnown RBP24.3■■□□□ 1.48
PTCD3-217ENST00000488801 RFC4P35249 363 aa24.29■■□□□ 1.48
PTCD3-217ENST00000488801 MSL1Q68DK7 614 aa24.29■■□□□ 1.48
PTCD3-217ENST00000488801 SRP68Q9UHB9 627 aaKnown RBP24.29■■□□□ 1.48
PTCD3-217ENST00000488801 NARFQ9UHQ1 456 aa24.29■■□□□ 1.48
PTCD3-217ENST00000488801 ANKRD31Q8N7Z5 1873 aa24.29■■□□□ 1.48
PTCD3-217ENST00000488801 DLEC1Q9Y238 1755 aa24.29■■□□□ 1.48
PTCD3-217ENST00000488801 LRP10Q7Z4F1 713 aa24.28■■□□□ 1.48
PTCD3-217ENST00000488801 PIP4K2AP48426 406 aaPredicted RBP24.27■■□□□ 1.48
PTCD3-217ENST00000488801 BCL2L12Q9HB09 334 aa24.27■■□□□ 1.48
PTCD3-217ENST00000488801 A0A087WZG4 1122 aa24.26■■□□□ 1.47
PTCD3-217ENST00000488801 PDIA6Q15084 440 aa24.26■■□□□ 1.47
PTCD3-217ENST00000488801 N4BP2Q86UW6 1770 aaPredicted RBP24.25■■□□□ 1.47
PTCD3-217ENST00000488801 POLD1P28340 1107 aa24.25■■□□□ 1.47
PTCD3-217ENST00000488801 FANCIQ9NVI1 1328 aa24.25■■□□□ 1.47
PTCD3-217ENST00000488801 USPL1Q5W0Q7 1092 aa24.24■■□□□ 1.47
PTCD3-217ENST00000488801 NLGN1Q8N2Q7 840 aa24.24■■□□□ 1.47
PTCD3-217ENST00000488801 TSR2Q969E8 191 aaKnown RBP24.24■■□□□ 1.47
PTCD3-217ENST00000488801 ARXQ96QS3 562 aa24.24■■□□□ 1.47
PTCD3-217ENST00000488801 SPINK5Q9NQ38 1064 aaPredicted RBP24.24■■□□□ 1.47
PTCD3-217ENST00000488801 SALL2Q9Y467 1007 aaPredicted RBP24.24■■□□□ 1.47
PTCD3-217ENST00000488801 RGL2O15211 777 aa24.23■■□□□ 1.47
PTCD3-217ENST00000488801 CAMTA2O94983 1202 aa24.23■■□□□ 1.47
PTCD3-217ENST00000488801 FKBP8Q14318 412 aa24.23■■□□□ 1.47
PTCD3-217ENST00000488801 DUSP27Q5VZP5 1158 aa24.23■■□□□ 1.47
PTCD3-217ENST00000488801 C10orf71Q711Q0 1435 aa24.23■■□□□ 1.47
PTCD3-217ENST00000488801 ZPR1O75312 459 aa24.22■■□□□ 1.47
PTCD3-217ENST00000488801 C8orf58Q8NAV2 365 aa24.21■■□□□ 1.47
PTCD3-217ENST00000488801 MMP10P09238 476 aa24.2■■□□□ 1.46
PTCD3-217ENST00000488801 TM4SF1P30408 202 aa24.2■■□□□ 1.46
PTCD3-217ENST00000488801 PROSER3Q2NL68 480 aa24.2■■□□□ 1.46
PTCD3-217ENST00000488801 DZIP3Q86Y13 1208 aaKnown RBP24.2■■□□□ 1.46
PTCD3-217ENST00000488801 TBC1D2BQ9UPU7 963 aa24.2■■□□□ 1.46
PTCD3-217ENST00000488801 COL11A2P13942 1736 aaPredicted RBP24.19■■□□□ 1.46
PTCD3-217ENST00000488801 DDR1Q08345 913 aa24.19■■□□□ 1.46
PTCD3-217ENST00000488801 ZNF330Q9Y3S2 320 aaPredicted RBP24.19■■□□□ 1.46
PTCD3-217ENST00000488801 EIF2S2P20042 333 aaKnown RBP24.18■■□□□ 1.46
PTCD3-217ENST00000488801 HDGFL1Q5TGJ6 251 aa24.18■■□□□ 1.46
PTCD3-217ENST00000488801 TSPYL6Q8N831 410 aa24.18■■□□□ 1.46
PTCD3-217ENST00000488801 DDX21Q9NR30 783 aaKnown RBP eCLIP24.18■■□□□ 1.46
PTCD3-217ENST00000488801 PPP1R1BQ9UD71 204 aaPredicted RBP24.18■■□□□ 1.46
PTCD3-217ENST00000488801 ARFGEF1Q9Y6D6 1849 aa24.17■■□□□ 1.46
PTCD3-217ENST00000488801 FHDC1Q9C0D6 1143 aaPredicted RBP24.17■■□□□ 1.46
PTCD3-217ENST00000488801 ATP10DQ9P241 1426 aa24.17■■□□□ 1.46
PTCD3-217ENST00000488801 POLRMTO00411 1230 aaKnown RBP24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms