RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 ANO8Q9HCE9 1232 aaPredicted RBP25■■□□□ 1.59
CCM2-216ENST00000488727 SLFN5Q08AF3 891 aa25■■□□□ 1.59
CCM2-216ENST00000488727 USP16Q9Y5T5 823 aa24.99■■□□□ 1.59
CCM2-216ENST00000488727 E9PSI1 815 aa24.98■■□□□ 1.59
CCM2-216ENST00000488727 CYP19A1P11511 503 aaPredicted RBP24.98■■□□□ 1.59
CCM2-216ENST00000488727 ZNF827Q17R98 1081 aa24.98■■□□□ 1.59
CCM2-216ENST00000488727 MYH16Q9H6N6 1097 aa24.98■■□□□ 1.59
CCM2-216ENST00000488727 TUBGCP6Q96RT7 1819 aa24.98■■□□□ 1.59
CCM2-216ENST00000488727 C8orf58Q8NAV2 365 aa24.98■■□□□ 1.59
CCM2-216ENST00000488727 UBR3Q6ZT12 1888 aa24.96■■□□□ 1.59
CCM2-216ENST00000488727 CRKLP46109 303 aaKnown RBP24.96■■□□□ 1.59
CCM2-216ENST00000488727 AKT1S1Q96B36 256 aa24.96■■□□□ 1.59
CCM2-216ENST00000488727 TEX13AQ9BXU3 409 aaPredicted RBP24.96■■□□□ 1.59
CCM2-216ENST00000488727 TRMT2AQ8IZ69 625 aaKnown RBP24.95■■□□□ 1.59
CCM2-216ENST00000488727 TSPYL6Q8N831 410 aa24.95■■□□□ 1.59
CCM2-216ENST00000488727 CNTNAP4Q9C0A0 1308 aa24.95■■□□□ 1.58
CCM2-216ENST00000488727 ELL2O00472 640 aaPredicted RBP24.95■■□□□ 1.58
CCM2-216ENST00000488727 DUSP27Q5VZP5 1158 aa24.95■■□□□ 1.58
CCM2-216ENST00000488727 STARD3NLO95772 234 aa24.94■■□□□ 1.58
CCM2-216ENST00000488727 EXOSC9Q06265 439 aaKnown RBP24.94■■□□□ 1.58
CCM2-216ENST00000488727 INTS5Q6P9B9 1019 aaKnown RBP24.93■■□□□ 1.58
CCM2-216ENST00000488727 AMIGO3Q86WK7 504 aa24.93■■□□□ 1.58
CCM2-216ENST00000488727 SLC15A2Q16348 729 aa24.92■■□□□ 1.58
CCM2-216ENST00000488727 RC3H1Q5TC82 1133 aaKnown RBP24.92■■□□□ 1.58
CCM2-216ENST00000488727 CCDC87Q9NVE4 849 aa24.92■■□□□ 1.58
CCM2-216ENST00000488727 AK7Q96M32 723 aa24.92■■□□□ 1.58
CCM2-216ENST00000488727 ZBTB1Q9Y2K1 713 aa24.92■■□□□ 1.58
CCM2-216ENST00000488727 QSER1Q2KHR3 1735 aa24.91■■□□□ 1.58
CCM2-216ENST00000488727 A1BGP04217 495 aa24.91■■□□□ 1.58
CCM2-216ENST00000488727 HOXB7P09629 217 aa24.91■■□□□ 1.58
CCM2-216ENST00000488727 HMGB2P26583 209 aaKnown RBP24.91■■□□□ 1.58
CCM2-216ENST00000488727 NBPF14Q5TI25 921 aa24.91■■□□□ 1.58
CCM2-216ENST00000488727 STK32BQ9NY57 414 aa24.91■■□□□ 1.58
CCM2-216ENST00000488727 GNPATO15228 680 aa24.9■■□□□ 1.58
CCM2-216ENST00000488727 EIF2S2P20042 333 aaKnown RBP24.9■■□□□ 1.58
CCM2-216ENST00000488727 SMIM5Q71RC9 77 aa24.9■■□□□ 1.58
CCM2-216ENST00000488727 PIP4K2AP48426 406 aaPredicted RBP24.89■■□□□ 1.58
CCM2-216ENST00000488727 TWISTNBQ3B726 338 aaPredicted RBP24.89■■□□□ 1.58
CCM2-216ENST00000488727 NECTIN2Q92692 538 aa24.89■■□□□ 1.58
CCM2-216ENST00000488727 TFCP2L1Q9NZI6 479 aa24.88■■□□□ 1.57
CCM2-216ENST00000488727 NBPF26B4DH59 902 aa24.87■■□□□ 1.57
CCM2-216ENST00000488727 CANXP27824 592 aaKnown RBP24.87■■□□□ 1.57
CCM2-216ENST00000488727 HDGFL1Q5TGJ6 251 aa24.87■■□□□ 1.57
CCM2-216ENST00000488727 NBPF10Q6P3W6 841 aaKnown RBP24.87■■□□□ 1.57
CCM2-216ENST00000488727 NBPF15Q8N660 670 aa24.87■■□□□ 1.57
CCM2-216ENST00000488727 SOS1Q07889 1333 aaPredicted RBP24.86■■□□□ 1.57
CCM2-216ENST00000488727 RPS6KA4O75676 772 aa24.86■■□□□ 1.57
CCM2-216ENST00000488727 PNPLA7Q6ZV29 1317 aa24.86■■□□□ 1.57
CCM2-216ENST00000488727 C4AP0C0L4 1744 aa24.86■■□□□ 1.57
CCM2-216ENST00000488727 R3HDM1Q15032 1099 aaKnown RBP24.86■■□□□ 1.57
CCM2-216ENST00000488727 RCAN3Q9UKA8 241 aa24.86■■□□□ 1.57
CCM2-216ENST00000488727 VAMP4O75379 141 aa24.85■■□□□ 1.57
CCM2-216ENST00000488727 RRP1P56182 461 aaKnown RBP24.85■■□□□ 1.57
CCM2-216ENST00000488727 RTCBQ9Y3I0 505 aaKnown RBP24.85■■□□□ 1.57
CCM2-216ENST00000488727 PHF14O94880 888 aa24.84■■□□□ 1.57
CCM2-216ENST00000488727 PDIA6Q15084 440 aa24.84■■□□□ 1.57
CCM2-216ENST00000488727 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.83■■□□□ 1.57
CCM2-216ENST00000488727 PROSER3Q2NL68 480 aa24.83■■□□□ 1.57
CCM2-216ENST00000488727 ERBB4Q15303 1308 aa24.83■■□□□ 1.57
CCM2-216ENST00000488727 PSDA5PKW4 1024 aaPredicted RBP24.83■■□□□ 1.57
CCM2-216ENST00000488727 SSFA2P28290 1259 aa24.83■■□□□ 1.57
CCM2-216ENST00000488727 EIF5P55010 431 aaKnown RBP24.83■■□□□ 1.57
CCM2-216ENST00000488727 B4GALNT3Q6L9W6 998 aa24.83■■□□□ 1.57
CCM2-216ENST00000488727 CHPF2Q9P2E5 772 aa24.83■■□□□ 1.57
CCM2-216ENST00000488727 CASZ1Q86V15 1759 aa24.82■■□□□ 1.56
CCM2-216ENST00000488727 ANXA1P04083 346 aa24.82■■□□□ 1.56
CCM2-216ENST00000488727 IL6STP40189 918 aaPredicted RBP24.82■■□□□ 1.56
CCM2-216ENST00000488727 PDGFDQ9GZP0 370 aaPredicted RBP24.82■■□□□ 1.56
CCM2-216ENST00000488727 COL15A1P39059 1388 aa24.82■■□□□ 1.56
CCM2-216ENST00000488727 LRP10Q7Z4F1 713 aa24.81■■□□□ 1.56
CCM2-216ENST00000488727 COL23A1Q86Y22 540 aaPredicted RBP24.81■■□□□ 1.56
CCM2-216ENST00000488727 ZNF330Q9Y3S2 320 aaPredicted RBP24.81■■□□□ 1.56
CCM2-216ENST00000488727 MYL6BP14649 208 aa24.81■■□□□ 1.56
CCM2-216ENST00000488727 TCERG1O14776 1098 aaKnown RBP24.8■■□□□ 1.56
CCM2-216ENST00000488727 CCDC30Q5VVM6 783 aa24.8■■□□□ 1.56
CCM2-216ENST00000488727 ARHGEF1Q92888 912 aaKnown RBP24.8■■□□□ 1.56
CCM2-216ENST00000488727 DDX21Q9NR30 783 aaKnown RBP eCLIP24.79■■□□□ 1.56
CCM2-216ENST00000488727 DBF4Q9UBU7 674 aaPredicted RBP24.79■■□□□ 1.56
CCM2-216ENST00000488727 ADRA2BP18089 450 aa24.78■■□□□ 1.56
CCM2-216ENST00000488727 TRAPPC3LQ5T215 181 aa24.78■■□□□ 1.56
CCM2-216ENST00000488727 FLAD1Q8NFF5 587 aa24.77■■□□□ 1.56
CCM2-216ENST00000488727 CACNA1FO60840 1977 aa24.76■■□□□ 1.55
CCM2-216ENST00000488727 RBM19Q9Y4C8 960 aaKnown RBP24.76■■□□□ 1.55
CCM2-216ENST00000488727 CHMP4AQ9BY43 222 aa24.75■■□□□ 1.55
CCM2-216ENST00000488727 BCORQ6W2J9 1755 aa24.75■■□□□ 1.55
CCM2-216ENST00000488727 SCN7AQ01118 1682 aa24.75■■□□□ 1.55
CCM2-216ENST00000488727 TBC1D2BQ9UPU7 963 aa24.75■■□□□ 1.55
CCM2-216ENST00000488727 MSH5O43196 834 aa24.74■■□□□ 1.55
CCM2-216ENST00000488727 CT47B1P0C2W7 299 aaPredicted RBP24.74■■□□□ 1.55
CCM2-216ENST00000488727 RFC4P35249 363 aa24.74■■□□□ 1.55
CCM2-216ENST00000488727 STK31Q9BXU1 1019 aa24.74■■□□□ 1.55
CCM2-216ENST00000488727 SRP68Q9UHB9 627 aaKnown RBP24.74■■□□□ 1.55
CCM2-216ENST00000488727 TTLL7Q6ZT98 887 aa24.73■■□□□ 1.55
CCM2-216ENST00000488727 PHAXQ9H814 394 aaKnown RBP24.73■■□□□ 1.55
CCM2-216ENST00000488727 USP42Q9H9J4 1324 aaKnown RBP24.73■■□□□ 1.55
CCM2-216ENST00000488727 DZIP3Q86Y13 1208 aaKnown RBP24.72■■□□□ 1.55
CCM2-216ENST00000488727 HYPKQ9NX55 129 aa24.72■■□□□ 1.55
CCM2-216ENST00000488727 A0A087WZG4 1122 aa24.72■■□□□ 1.55
CCM2-216ENST00000488727 SLC4A2P04920 1241 aa24.72■■□□□ 1.55
CCM2-216ENST00000488727 COPS6Q7L5N1 327 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms