RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 GGA1Q9UJY5 639 aa7.21□□□□□ -1.26
VPS50-216ENST00000484954 C2CD2LO14523 706 aa7.2□□□□□ -1.26
VPS50-216ENST00000484954 GNB5O14775 395 aa7.2□□□□□ -1.26
VPS50-216ENST00000484954 SCNN1DP51172 638 aa7.2□□□□□ -1.26
VPS50-216ENST00000484954 MAP7D1Q3KQU3 841 aa7.2□□□□□ -1.26
VPS50-216ENST00000484954 PROSER2Q86WR7 435 aaPredicted RBP7.2□□□□□ -1.26
VPS50-216ENST00000484954 DEPDC4Q8N2C3 294 aa7.2□□□□□ -1.26
VPS50-216ENST00000484954 XAGE2Q96GT9 111 aa7.2□□□□□ -1.26
VPS50-216ENST00000484954 FHDC1Q9C0D6 1143 aaPredicted RBP7.2□□□□□ -1.26
VPS50-216ENST00000484954 WDR44Q5JSH3 913 aa7.19□□□□□ -1.26
VPS50-216ENST00000484954 WWC1Q8IX03 1113 aa7.19□□□□□ -1.26
VPS50-216ENST00000484954 ABHD17AQ96GS6 310 aa7.19□□□□□ -1.26
VPS50-216ENST00000484954 BTBD6Q96KE9 485 aa7.19□□□□□ -1.26
VPS50-216ENST00000484954 RUBCNLQ9H714 662 aa7.19□□□□□ -1.26
VPS50-216ENST00000484954 NCOA4Q13772 614 aa7.18□□□□□ -1.26
VPS50-216ENST00000484954 TBC1D9Q6ZT07 1266 aa7.18□□□□□ -1.26
VPS50-216ENST00000484954 PCDHGA11Q9Y5H2 935 aa7.18□□□□□ -1.26
VPS50-216ENST00000484954 USP17L5A8MUK1 530 aa7.17□□□□□ -1.26
VPS50-216ENST00000484954 TMEM229AB2RXF0 380 aa7.17□□□□□ -1.26
VPS50-216ENST00000484954 PIK3R2O00459 728 aa7.17□□□□□ -1.26
VPS50-216ENST00000484954 GDF10P55107 478 aa7.17□□□□□ -1.26
VPS50-216ENST00000484954 CTBSQ01459 385 aa7.17□□□□□ -1.26
VPS50-216ENST00000484954 SLCO4C1Q6ZQN7 724 aa7.17□□□□□ -1.26
VPS50-216ENST00000484954 UBAP2LQ14157 1087 aaKnown RBP7.16□□□□□ -1.26
VPS50-216ENST00000484954 NFATC2IPQ8NCF5 419 aa7.16□□□□□ -1.26
VPS50-216ENST00000484954 GLMNQ92990 594 aa7.16□□□□□ -1.26
VPS50-216ENST00000484954 SIRT1Q96EB6 747 aa7.16□□□□□ -1.26
VPS50-216ENST00000484954 ZSCAN10Q96SZ4 725 aaPredicted RBP7.16□□□□□ -1.26
VPS50-216ENST00000484954 NOP53Q9NZM5 478 aaKnown RBP7.16□□□□□ -1.26
VPS50-216ENST00000484954 NEURL1BA8MQ27 555 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 INHAP05111 366 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 CSB-PGBD3P0DP91 1061 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 EPXP11678 715 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 FGFR3P22607 806 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 GATA4P43694 442 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 DGKGP49619 791 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 TLR1Q15399 786 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 EML3Q32P44 896 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 FOXD4L6Q3SYB3 417 aaPredicted RBP7.15□□□□□ -1.26
VPS50-216ENST00000484954 C4orf17Q53FE4 359 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 ESCO1Q5FWF5 840 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 FOXD4L3Q6VB84 417 aaPredicted RBP7.15□□□□□ -1.26
VPS50-216ENST00000484954 PGBD3Q8N328 593 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 GOLGA2P5Q9HBQ8 144 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 SERTAD1Q9UHV2 236 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 ATXN7L1Q9ULK2 861 aaPredicted RBP7.15□□□□□ -1.26
VPS50-216ENST00000484954 USP3Q9Y6I4 520 aa7.15□□□□□ -1.26
VPS50-216ENST00000484954 A0A1B0GTH6 734 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 USP17L3A6NCW0 530 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 USP17L4A6NCW7 530 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 A6NJR5 290 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 GTF2IP78347 998 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 USP17L2Q6R6M4 530 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 USP17L1Q7RTZ2 530 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 KIAA1024Q9UPX6 916 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 NOD1Q9Y239 953 aa7.14□□□□□ -1.27
VPS50-216ENST00000484954 BNIP3LO60238 219 aa7.13□□□□□ -1.27
VPS50-216ENST00000484954 MSX1P28360 303 aa7.13□□□□□ -1.27
VPS50-216ENST00000484954 TMEM214Q6NUQ4 689 aaKnown RBP7.13□□□□□ -1.27
VPS50-216ENST00000484954 PPARGC1BQ86YN6 1023 aaKnown RBP7.13□□□□□ -1.27
VPS50-216ENST00000484954 ATP9BO43861 1147 aa7.12□□□□□ -1.27
VPS50-216ENST00000484954 EFHC2Q5JST6 749 aa7.12□□□□□ -1.27
VPS50-216ENST00000484954 ZNF295-AS1Q8N0V1 137 aa7.12□□□□□ -1.27
VPS50-216ENST00000484954 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS50-216ENST00000484954 KRTAP4-2Q9BYR5 136 aa7.12□□□□□ -1.27
VPS50-216ENST00000484954 ZBTB7BO15156 539 aaPredicted RBP7.11□□□□□ -1.27
VPS50-216ENST00000484954 SMTNP53814 917 aa7.11□□□□□ -1.27
VPS50-216ENST00000484954 CLDN10P78369 228 aa7.11□□□□□ -1.27
VPS50-216ENST00000484954 RSPO4Q2I0M5 234 aaPredicted RBP7.11□□□□□ -1.27
VPS50-216ENST00000484954 GNASQ5JWF2 1037 aa7.11□□□□□ -1.27
VPS50-216ENST00000484954 CHSY3Q70JA7 882 aa7.11□□□□□ -1.27
VPS50-216ENST00000484954 PLEKHM2Q8IWE5 1019 aa7.11□□□□□ -1.27
VPS50-216ENST00000484954 RHBDD1Q8TEB9 315 aa7.11□□□□□ -1.27
VPS50-216ENST00000484954 KRTAP4-9Q9BYQ8 210 aa7.11□□□□□ -1.27
VPS50-216ENST00000484954 ZNF358Q9NW07 568 aa7.11□□□□□ -1.27
VPS50-216ENST00000484954 TFIP11Q9UBB9 837 aaKnown RBP7.11□□□□□ -1.27
VPS50-216ENST00000484954 IQSEC3Q9UPP2 1182 aaPredicted RBP7.11□□□□□ -1.27
VPS50-216ENST00000484954 PLA2G4AP47712 749 aa7.1□□□□□ -1.27
VPS50-216ENST00000484954 PSME1Q06323 249 aa7.1□□□□□ -1.27
VPS50-216ENST00000484954 LBRQ14739 615 aaKnown RBP7.1□□□□□ -1.27
VPS50-216ENST00000484954 SLC4A9Q96Q91 983 aa7.1□□□□□ -1.27
VPS50-216ENST00000484954 NDFIP2Q9NV92 336 aa7.1□□□□□ -1.27
VPS50-216ENST00000484954 A6NJY4 79 aa7.09□□□□□ -1.27
VPS50-216ENST00000484954 LZTS3O60299 673 aaPredicted RBP7.09□□□□□ -1.27
VPS50-216ENST00000484954 ARAFP10398 606 aa7.09□□□□□ -1.27
VPS50-216ENST00000484954 GTF2E1P29083 439 aaPredicted RBP7.09□□□□□ -1.27
VPS50-216ENST00000484954 MTFR1Q15390 333 aa7.09□□□□□ -1.27
VPS50-216ENST00000484954 TRIM11Q96F44 468 aa7.09□□□□□ -1.27
VPS50-216ENST00000484954 CALR3Q96L12 384 aaKnown RBP7.09□□□□□ -1.27
VPS50-216ENST00000484954 PLVAPQ9BX97 442 aa7.09□□□□□ -1.27
VPS50-216ENST00000484954 ZFP64Q9NPA5 681 aa7.09□□□□□ -1.27
VPS50-216ENST00000484954 MKRN1Q9UHC7 482 aaKnown RBP7.09□□□□□ -1.27
VPS50-216ENST00000484954 ZNF777Q9ULD5 760 aaPredicted RBP7.09□□□□□ -1.27
VPS50-216ENST00000484954 PALM3A6NDB9 673 aaPredicted RBP7.08□□□□□ -1.28
VPS50-216ENST00000484954 EPHA4P54764 986 aa7.08□□□□□ -1.28
VPS50-216ENST00000484954 TBCELQ5QJ74 424 aa7.08□□□□□ -1.28
VPS50-216ENST00000484954 NBPF11Q86T75 865 aa7.08□□□□□ -1.28
VPS50-216ENST00000484954 TPCN2Q8NHX9 752 aa7.08□□□□□ -1.28
VPS50-216ENST00000484954 MAFBQ9Y5Q3 323 aaPredicted RBP7.08□□□□□ -1.28
VPS50-216ENST00000484954 ATP4AP20648 1035 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms