RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 MSL1Q68DK7 614 aa23.69■■□□□ 1.38
HDAC6-225ENST00000483506 ZBTB1Q9Y2K1 713 aa23.69■■□□□ 1.38
HDAC6-225ENST00000483506 BABAM1Q9NWV8 329 aa23.68■■□□□ 1.38
HDAC6-225ENST00000483506 TRIM35Q9UPQ4 493 aa23.68■■□□□ 1.38
HDAC6-225ENST00000483506 RRP7AQ9Y3A4 280 aaKnown RBP23.68■■□□□ 1.38
HDAC6-225ENST00000483506 RFC4P35249 363 aa23.67■■□□□ 1.38
HDAC6-225ENST00000483506 FHDC1Q9C0D6 1143 aaPredicted RBP23.67■■□□□ 1.38
HDAC6-225ENST00000483506 MRS2Q9HD23 443 aa23.67■■□□□ 1.38
HDAC6-225ENST00000483506 LAMB4A4D0S4 1761 aa23.67■■□□□ 1.38
HDAC6-225ENST00000483506 USP42Q9H9J4 1324 aaKnown RBP23.66■■□□□ 1.38
HDAC6-225ENST00000483506 SNRPA1P09661 255 aaKnown RBP23.66■■□□□ 1.38
HDAC6-225ENST00000483506 MIS18AQ9NYP9 233 aa23.66■■□□□ 1.38
HDAC6-225ENST00000483506 COL15A1P39059 1388 aa23.65■■□□□ 1.38
HDAC6-225ENST00000483506 GYS1P13807 737 aa23.65■■□□□ 1.38
HDAC6-225ENST00000483506 SYT17Q9BSW7 474 aa23.65■■□□□ 1.38
HDAC6-225ENST00000483506 EIF5P55010 431 aaKnown RBP23.64■■□□□ 1.37
HDAC6-225ENST00000483506 NEUROD2Q15784 382 aa23.64■■□□□ 1.37
HDAC6-225ENST00000483506 NLGN1Q8N2Q7 840 aa23.64■■□□□ 1.37
HDAC6-225ENST00000483506 APAF1O14727 1248 aa23.63■■□□□ 1.37
HDAC6-225ENST00000483506 EIF4A1P60842 406 aaKnown RBP23.63■■□□□ 1.37
HDAC6-225ENST00000483506 PRAMEF22A3QJZ6 481 aa23.62■■□□□ 1.37
HDAC6-225ENST00000483506 IL6STP40189 918 aaPredicted RBP23.62■■□□□ 1.37
HDAC6-225ENST00000483506 USP16Q9Y5T5 823 aa23.62■■□□□ 1.37
HDAC6-225ENST00000483506 NARFQ9UHQ1 456 aa23.61■■□□□ 1.37
HDAC6-225ENST00000483506 GIGYF1O75420 1035 aaPredicted RBP23.6■■□□□ 1.37
HDAC6-225ENST00000483506 CANXP27824 592 aaKnown RBP23.6■■□□□ 1.37
HDAC6-225ENST00000483506 SRP68Q9UHB9 627 aaKnown RBP23.6■■□□□ 1.37
HDAC6-225ENST00000483506 TSPYL4Q9UJ04 414 aa23.6■■□□□ 1.37
HDAC6-225ENST00000483506 SCN7AQ01118 1682 aa23.6■■□□□ 1.37
HDAC6-225ENST00000483506 A0A087WZG4 1122 aa23.59■■□□□ 1.37
HDAC6-225ENST00000483506 CHL1O00533 1208 aa23.59■■□□□ 1.37
HDAC6-225ENST00000483506 A1BGP04217 495 aa23.59■■□□□ 1.37
HDAC6-225ENST00000483506 MMP10P09238 476 aa23.59■■□□□ 1.37
HDAC6-225ENST00000483506 NCBP3Q53F19 620 aaKnown RBP23.58■■□□□ 1.37
HDAC6-225ENST00000483506 KIF13BQ9NQT8 1826 aa23.57■■□□□ 1.36
HDAC6-225ENST00000483506 ZPR1O75312 459 aa23.57■■□□□ 1.36
HDAC6-225ENST00000483506 FKBP8Q14318 412 aa23.57■■□□□ 1.36
HDAC6-225ENST00000483506 CD2APQ9Y5K6 639 aa23.57■■□□□ 1.36
HDAC6-225ENST00000483506 USPL1Q5W0Q7 1092 aa23.56■■□□□ 1.36
HDAC6-225ENST00000483506 BCORQ6W2J9 1755 aa23.55■■□□□ 1.36
HDAC6-225ENST00000483506 CFAP44Q96MT7 982 aa23.55■■□□□ 1.36
HDAC6-225ENST00000483506 BCL2L12Q9HB09 334 aa23.55■■□□□ 1.36
HDAC6-225ENST00000483506 NBPF26B4DH59 902 aa23.54■■□□□ 1.36
HDAC6-225ENST00000483506 ZNF853P0CG23 659 aa23.54■■□□□ 1.36
HDAC6-225ENST00000483506 CCDC27Q2M243 656 aa23.54■■□□□ 1.36
HDAC6-225ENST00000483506 NBPF10Q6P3W6 841 aaKnown RBP23.54■■□□□ 1.36
HDAC6-225ENST00000483506 NBPF15Q8N660 670 aa23.54■■□□□ 1.36
HDAC6-225ENST00000483506 C10orf71Q711Q0 1435 aa23.53■■□□□ 1.36
HDAC6-225ENST00000483506 TM4SF1P30408 202 aa23.53■■□□□ 1.36
HDAC6-225ENST00000483506 CALD1Q05682 793 aaKnown RBP23.53■■□□□ 1.36
HDAC6-225ENST00000483506 NLGN2Q8NFZ4 835 aa23.52■■□□□ 1.36
HDAC6-225ENST00000483506 ERBB4Q15303 1308 aa23.52■■□□□ 1.36
HDAC6-225ENST00000483506 NRXN2Q9P2S2 1712 aa23.51■■□□□ 1.35
HDAC6-225ENST00000483506 DDR1Q08345 913 aa23.51■■□□□ 1.35
HDAC6-225ENST00000483506 KLHL34Q8N239 644 aa23.51■■□□□ 1.35
HDAC6-225ENST00000483506 IFT57Q9NWB7 429 aa23.51■■□□□ 1.35
HDAC6-225ENST00000483506 RGL2O15211 777 aa23.5■■□□□ 1.35
HDAC6-225ENST00000483506 PARP3Q9Y6F1 533 aa23.5■■□□□ 1.35
HDAC6-225ENST00000483506 KIAA1551Q9HCM1 1747 aa23.5■■□□□ 1.35
HDAC6-225ENST00000483506 POLRMTO00411 1230 aaKnown RBP23.49■■□□□ 1.35
HDAC6-225ENST00000483506 CAMTA2O94983 1202 aa23.49■■□□□ 1.35
HDAC6-225ENST00000483506 PIP4K2AP48426 406 aaPredicted RBP23.49■■□□□ 1.35
HDAC6-225ENST00000483506 TBC1D2BQ9UPU7 963 aa23.49■■□□□ 1.35
HDAC6-225ENST00000483506 GNAI1P63096 354 aa23.48■■□□□ 1.35
HDAC6-225ENST00000483506 NFIXQ14938 502 aa23.48■■□□□ 1.35
HDAC6-225ENST00000483506 NPM2Q86SE8 214 aaKnown RBP23.48■■□□□ 1.35
HDAC6-225ENST00000483506 DZIP3Q86Y13 1208 aaKnown RBP23.48■■□□□ 1.35
HDAC6-225ENST00000483506 MBIPQ9NS73 344 aa23.48■■□□□ 1.35
HDAC6-225ENST00000483506 ZNF330Q9Y3S2 320 aaPredicted RBP23.48■■□□□ 1.35
HDAC6-225ENST00000483506 AFDNP55196 1824 aaKnown RBP23.47■■□□□ 1.35
HDAC6-225ENST00000483506 HOXB7P09629 217 aa23.47■■□□□ 1.35
HDAC6-225ENST00000483506 LAS1LQ9Y4W2 734 aaKnown RBP23.47■■□□□ 1.35
HDAC6-225ENST00000483506 WWC1Q8IX03 1113 aa23.46■■□□□ 1.35
HDAC6-225ENST00000483506 GOLGB1Q14789 3259 aaKnown RBP23.45■■□□□ 1.34
HDAC6-225ENST00000483506 DCAF8L1A6NGE4 600 aa23.45■■□□□ 1.34
HDAC6-225ENST00000483506 CLEC4GQ6UXB4 293 aa23.45■■□□□ 1.34
HDAC6-225ENST00000483506 UTRNP46939 3433 aa23.45■■□□□ 1.34
HDAC6-225ENST00000483506 PXDNLA1KZ92 1463 aa23.44■■□□□ 1.34
HDAC6-225ENST00000483506 IL16Q14005 1332 aa23.44■■□□□ 1.34
HDAC6-225ENST00000483506 CCER2I3L3R5 266 aa23.44■■□□□ 1.34
HDAC6-225ENST00000483506 KRT24Q2M2I5 525 aa23.44■■□□□ 1.34
HDAC6-225ENST00000483506 LRP10Q7Z4F1 713 aa23.44■■□□□ 1.34
HDAC6-225ENST00000483506 FAM9BQ8IZU0 186 aa23.44■■□□□ 1.34
HDAC6-225ENST00000483506 TGFB2P61812 414 aa23.43■■□□□ 1.34
HDAC6-225ENST00000483506 PDIA6Q15084 440 aa23.43■■□□□ 1.34
HDAC6-225ENST00000483506 TBC1D9BQ66K14 1250 aa23.43■■□□□ 1.34
HDAC6-225ENST00000483506 NGEFQ8N5V2 710 aa23.43■■□□□ 1.34
HDAC6-225ENST00000483506 CARMIL3Q8ND23 1372 aa23.41■■□□□ 1.34
HDAC6-225ENST00000483506 BRCA1P38398 1863 aaKnown RBP23.41■■□□□ 1.34
HDAC6-225ENST00000483506 ERVV-1B6SEH8 477 aa23.4■■□□□ 1.34
HDAC6-225ENST00000483506 SERPINB2P05120 415 aa23.4■■□□□ 1.34
HDAC6-225ENST00000483506 EIF2S2P20042 333 aaKnown RBP23.4■■□□□ 1.34
HDAC6-225ENST00000483506 ZNF652Q9Y2D9 606 aa23.4■■□□□ 1.34
HDAC6-225ENST00000483506 N4BP2Q86UW6 1770 aaPredicted RBP23.4■■□□□ 1.34
HDAC6-225ENST00000483506 DUSP27Q5VZP5 1158 aa23.39■■□□□ 1.33
HDAC6-225ENST00000483506 NUP98P52948 1817 aa23.38■■□□□ 1.33
HDAC6-225ENST00000483506 MAP3K15Q6ZN16 1313 aa23.38■■□□□ 1.33
HDAC6-225ENST00000483506 MYL6BP14649 208 aa23.38■■□□□ 1.33
HDAC6-225ENST00000483506 PROSER3Q2NL68 480 aa23.38■■□□□ 1.33
HDAC6-225ENST00000483506 WDR63Q8IWG1 891 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms