RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 ACDQ96AP0 544 aa9.73□□□□□ -0.85
VPS50-213ENST00000477572 BNIP3LO60238 219 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 ARHGEF15O94989 841 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 RASA1P20936 1047 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 TXLNAP40222 546 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 EPHA4P54764 986 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 MAP3K10Q02779 954 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 PPP1R12CQ9BZL4 782 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 ZCCHC2Q9C0B9 1178 aaKnown RBP9.72□□□□□ -0.85
VPS50-213ENST00000477572 CRISPLD1Q9H336 500 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 ZNF232Q9UNY5 417 aa9.72□□□□□ -0.85
VPS50-213ENST00000477572 A0A1W2PNR3 127 aa9.71□□□□□ -0.86
VPS50-213ENST00000477572 LGR5O75473 907 aa9.71□□□□□ -0.86
VPS50-213ENST00000477572 SH3PXD2AQ5TCZ1 1133 aa9.71□□□□□ -0.86
VPS50-213ENST00000477572 TSEN2Q8NCE0 465 aaKnown RBP9.71□□□□□ -0.86
VPS50-213ENST00000477572 L3MBTL2Q969R5 705 aa9.71□□□□□ -0.86
VPS50-213ENST00000477572 CFHR5Q9BXR6 569 aa9.71□□□□□ -0.86
VPS50-213ENST00000477572 PHF24Q9UPV7 400 aa9.71□□□□□ -0.86
VPS50-213ENST00000477572 TATP17735 454 aaPredicted RBP9.7□□□□□ -0.86
VPS50-213ENST00000477572 LMOD1P29536 600 aaPredicted RBP9.7□□□□□ -0.86
VPS50-213ENST00000477572 FOXK2Q01167 660 aa9.7□□□□□ -0.86
VPS50-213ENST00000477572 CTBSQ01459 385 aa9.7□□□□□ -0.86
VPS50-213ENST00000477572 LBRQ14739 615 aaKnown RBP9.7□□□□□ -0.86
VPS50-213ENST00000477572 BICDL1Q6ZP65 573 aa9.7□□□□□ -0.86
VPS50-213ENST00000477572 LARGE2Q8N3Y3 721 aa9.7□□□□□ -0.86
VPS50-213ENST00000477572 TSPAN10Q9H1Z9 355 aaPredicted RBP9.7□□□□□ -0.86
VPS50-213ENST00000477572 DCDC2BA2VCK2 349 aa9.69□□□□□ -0.86
VPS50-213ENST00000477572 NOS2P35228 1153 aa9.69□□□□□ -0.86
VPS50-213ENST00000477572 C1orf216Q8TAB5 229 aa9.69□□□□□ -0.86
VPS50-213ENST00000477572 ZIC5Q96T25 663 aa9.69□□□□□ -0.86
VPS50-213ENST00000477572 NSFL1CQ9UNZ2 370 aaKnown RBP9.69□□□□□ -0.86
VPS50-213ENST00000477572 C2CD2LO14523 706 aa9.68□□□□□ -0.86
VPS50-213ENST00000477572 MARSP56192 900 aaKnown RBP9.68□□□□□ -0.86
VPS50-213ENST00000477572 KLRG1Q96E93 195 aa9.68□□□□□ -0.86
VPS50-213ENST00000477572 NDFIP2Q9NV92 336 aa9.68□□□□□ -0.86
VPS50-213ENST00000477572 ATXN7L1Q9ULK2 861 aaPredicted RBP9.68□□□□□ -0.86
VPS50-213ENST00000477572 RBM19Q9Y4C8 960 aaKnown RBP9.68□□□□□ -0.86
VPS50-213ENST00000477572 GJA3Q9Y6H8 435 aa9.68□□□□□ -0.86
VPS50-213ENST00000477572 DKK1O94907 266 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 BCRP11274 1271 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 BMP4P12644 408 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 FGFR3P22607 806 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 TEAD4Q15561 434 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 CRTC2Q53ET0 693 aaPredicted RBP9.67□□□□□ -0.86
VPS50-213ENST00000477572 SIX5Q8N196 739 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 GAS2L2Q8NHY3 880 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 OXCT2Q9BYC2 517 aaPredicted RBP9.67□□□□□ -0.86
VPS50-213ENST00000477572 ZDHHC3Q9NYG2 299 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 PCDHGC4Q9Y5F7 938 aa9.67□□□□□ -0.86
VPS50-213ENST00000477572 SERTM1A2A2V5 107 aa9.66□□□□□ -0.86
VPS50-213ENST00000477572 KHNYNO15037 678 aaKnown RBP9.66□□□□□ -0.86
VPS50-213ENST00000477572 ATXN7O15265 892 aaPredicted RBP9.66□□□□□ -0.86
VPS50-213ENST00000477572 CDCA8Q53HL2 280 aa9.66□□□□□ -0.86
VPS50-213ENST00000477572 KANK4Q5T7N3 995 aaPredicted RBP9.66□□□□□ -0.86
VPS50-213ENST00000477572 FIGNL1Q6PIW4 674 aa9.66□□□□□ -0.86
VPS50-213ENST00000477572 LARP1Q6PKG0 1096 aaKnown RBP9.66□□□□□ -0.86
VPS50-213ENST00000477572 NEDD1Q8NHV4 660 aa9.66□□□□□ -0.86
VPS50-213ENST00000477572 HCN2Q9UL51 889 aa9.66□□□□□ -0.86
VPS50-213ENST00000477572 HCN4Q9Y3Q4 1203 aa9.66□□□□□ -0.86
VPS50-213ENST00000477572 CD33P20138 364 aa9.65□□□□□ -0.86
VPS50-213ENST00000477572 MAP2K3P46734 347 aa9.65□□□□□ -0.86
VPS50-213ENST00000477572 LRRC69Q6ZNQ3 347 aa9.65□□□□□ -0.86
VPS50-213ENST00000477572 NLRP8Q86W28 1048 aa9.65□□□□□ -0.86
VPS50-213ENST00000477572 MAPTP10636 758 aaKnown RBP9.64□□□□□ -0.87
VPS50-213ENST00000477572 RFX1P22670 979 aa9.64□□□□□ -0.87
VPS50-213ENST00000477572 IRS1P35568 1242 aa9.64□□□□□ -0.87
VPS50-213ENST00000477572 GSK3AP49840 483 aa9.64□□□□□ -0.87
VPS50-213ENST00000477572 DPYDQ12882 1025 aa9.64□□□□□ -0.87
VPS50-213ENST00000477572 CHMP7Q8WUX9 453 aaPredicted RBP9.64□□□□□ -0.87
VPS50-213ENST00000477572 ENAMQ9NRM1 1142 aa9.64□□□□□ -0.87
VPS50-213ENST00000477572 EML1O00423 815 aa9.63□□□□□ -0.87
VPS50-213ENST00000477572 PPP1R12BO60237 982 aaPredicted RBP9.63□□□□□ -0.87
VPS50-213ENST00000477572 SEC13P55735 322 aa9.63□□□□□ -0.87
VPS50-213ENST00000477572 PSMA6P60900 246 aaKnown RBP9.63□□□□□ -0.87
VPS50-213ENST00000477572 TNP2Q05952 138 aa9.63□□□□□ -0.87
VPS50-213ENST00000477572 C1orf229Q6ZS94 237 aaPredicted RBP9.63□□□□□ -0.87
VPS50-213ENST00000477572 HINFPQ9BQA5 517 aa9.63□□□□□ -0.87
VPS50-213ENST00000477572 VRTNQ9H8Y1 702 aa9.63□□□□□ -0.87
VPS50-213ENST00000477572 OIP5O43482 229 aa9.62□□□□□ -0.87
VPS50-213ENST00000477572 C21orf2O43822 256 aa9.62□□□□□ -0.87
VPS50-213ENST00000477572 KCNMA1Q12791 1236 aa9.62□□□□□ -0.87
VPS50-213ENST00000477572 PTK7Q13308 1070 aa9.62□□□□□ -0.87
VPS50-213ENST00000477572 GALNT6Q8NCL4 622 aa9.62□□□□□ -0.87
VPS50-213ENST00000477572 SCG3Q8WXD2 468 aaKnown RBP9.62□□□□□ -0.87
VPS50-213ENST00000477572 SHISA8B8ZZ34 492 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L15C9J2P7 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L10C9JJH3 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L13C9JLJ4 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L12C9JPN9 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L11C9JVI0 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L21D6R901 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L18D6R9N7 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L22D6RA61 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L17D6RBQ6 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L19D6RCP7 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L20D6RJB6 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 M0R2N6 131 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 RASSF7Q02833 373 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 USP17L24Q0WX57 530 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 CFAP70Q5T0N1 1121 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms