RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CCDC87Q9NVE4 849 aa12.74□□□□□ -0.37
HDAC3-208ENST00000476739 RTCBQ9Y3I0 505 aaKnown RBP12.74□□□□□ -0.37
HDAC3-208ENST00000476739 USP16Q9Y5T5 823 aa12.74□□□□□ -0.37
HDAC3-208ENST00000476739 TRAPPC3LQ5T215 181 aa12.73□□□□□ -0.37
HDAC3-208ENST00000476739 DIEXFQ68CQ4 756 aaKnown RBP12.73□□□□□ -0.37
HDAC3-208ENST00000476739 FLAD1Q8NFF5 587 aa12.73□□□□□ -0.37
HDAC3-208ENST00000476739 C4AP0C0L4 1744 aa12.73□□□□□ -0.37
HDAC3-208ENST00000476739 A1BGP04217 495 aa12.72□□□□□ -0.37
HDAC3-208ENST00000476739 CANXP27824 592 aaKnown RBP12.72□□□□□ -0.37
HDAC3-208ENST00000476739 PIP4K2AP48426 406 aaPredicted RBP12.72□□□□□ -0.37
HDAC3-208ENST00000476739 EIF4A1P60842 406 aaKnown RBP12.72□□□□□ -0.37
HDAC3-208ENST00000476739 TSPYL4Q9UJ04 414 aa12.72□□□□□ -0.37
HDAC3-208ENST00000476739 LAS1LQ9Y4W2 734 aaKnown RBP12.72□□□□□ -0.37
HDAC3-208ENST00000476739 SOS1Q07889 1333 aaPredicted RBP12.71□□□□□ -0.37
HDAC3-208ENST00000476739 CHL1O00533 1208 aa12.71□□□□□ -0.37
HDAC3-208ENST00000476739 SNRPA1P09661 255 aaKnown RBP12.71□□□□□ -0.37
HDAC3-208ENST00000476739 MIER1Q8N108 512 aa12.71□□□□□ -0.37
HDAC3-208ENST00000476739 SRP68Q9UHB9 627 aaKnown RBP12.71□□□□□ -0.37
HDAC3-208ENST00000476739 GIGYF1O75420 1035 aaPredicted RBP12.7□□□□□ -0.38
HDAC3-208ENST00000476739 STARD3NLO95772 234 aa12.7□□□□□ -0.38
HDAC3-208ENST00000476739 ADRA2BP18089 450 aa12.7□□□□□ -0.38
HDAC3-208ENST00000476739 KRT24Q2M2I5 525 aa12.7□□□□□ -0.38
HDAC3-208ENST00000476739 TEX13AQ9BXU3 409 aaPredicted RBP12.7□□□□□ -0.38
HDAC3-208ENST00000476739 SALL2Q9Y467 1007 aaPredicted RBP12.7□□□□□ -0.38
HDAC3-208ENST00000476739 ZNF853P0CG23 659 aa12.69□□□□□ -0.38
HDAC3-208ENST00000476739 GYS1P13807 737 aa12.69□□□□□ -0.38
HDAC3-208ENST00000476739 RFC4P35249 363 aa12.69□□□□□ -0.38
HDAC3-208ENST00000476739 EIF5P55010 431 aaKnown RBP12.69□□□□□ -0.38
HDAC3-208ENST00000476739 COL15A1P39059 1388 aa12.69□□□□□ -0.38
HDAC3-208ENST00000476739 NBPF26B4DH59 902 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 CCER2I3L3R5 266 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 NBPF10Q6P3W6 841 aaKnown RBP12.68□□□□□ -0.38
HDAC3-208ENST00000476739 WWC1Q8IX03 1113 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 NBPF15Q8N660 670 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 CFAP44Q96MT7 982 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 ARXQ96QS3 562 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 MBIPQ9NS73 344 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 BABAM1Q9NWV8 329 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 PPP1R1BQ9UD71 204 aaPredicted RBP12.68□□□□□ -0.38
HDAC3-208ENST00000476739 ZNF330Q9Y3S2 320 aaPredicted RBP12.68□□□□□ -0.38
HDAC3-208ENST00000476739 LAMB4A4D0S4 1761 aa12.68□□□□□ -0.38
HDAC3-208ENST00000476739 USP42Q9H9J4 1324 aaKnown RBP12.67□□□□□ -0.38
HDAC3-208ENST00000476739 POLD1P28340 1107 aa12.67□□□□□ -0.38
HDAC3-208ENST00000476739 CCDC27Q2M243 656 aa12.67□□□□□ -0.38
HDAC3-208ENST00000476739 USPL1Q5W0Q7 1092 aa12.67□□□□□ -0.38
HDAC3-208ENST00000476739 FHDC1Q9C0D6 1143 aaPredicted RBP12.67□□□□□ -0.38
HDAC3-208ENST00000476739 BCL2L12Q9HB09 334 aa12.67□□□□□ -0.38
HDAC3-208ENST00000476739 IL6STP40189 918 aaPredicted RBP12.66□□□□□ -0.38
HDAC3-208ENST00000476739 FKBP8Q14318 412 aa12.66□□□□□ -0.38
HDAC3-208ENST00000476739 NARFQ9UHQ1 456 aa12.66□□□□□ -0.38
HDAC3-208ENST00000476739 TBC1D2BQ9UPU7 963 aa12.66□□□□□ -0.38
HDAC3-208ENST00000476739 IFT57Q9NWB7 429 aa12.65□□□□□ -0.38
HDAC3-208ENST00000476739 ZPR1O75312 459 aa12.64□□□□□ -0.39
HDAC3-208ENST00000476739 MMP10P09238 476 aa12.64□□□□□ -0.39
HDAC3-208ENST00000476739 EIF2S2P20042 333 aaKnown RBP12.64□□□□□ -0.39
HDAC3-208ENST00000476739 KLHL34Q8N239 644 aa12.64□□□□□ -0.39
HDAC3-208ENST00000476739 NLGN1Q8N2Q7 840 aa12.64□□□□□ -0.39
HDAC3-208ENST00000476739 TSR2Q969E8 191 aaKnown RBP12.64□□□□□ -0.39
HDAC3-208ENST00000476739 SYT17Q9BSW7 474 aa12.64□□□□□ -0.39
HDAC3-208ENST00000476739 ANXA1P04083 346 aa12.63□□□□□ -0.39
HDAC3-208ENST00000476739 MYL6BP14649 208 aa12.63□□□□□ -0.39
HDAC3-208ENST00000476739 GNAI1P63096 354 aa12.63□□□□□ -0.39
HDAC3-208ENST00000476739 DDR1Q08345 913 aa12.63□□□□□ -0.39
HDAC3-208ENST00000476739 PDIA6Q15084 440 aa12.63□□□□□ -0.39
HDAC3-208ENST00000476739 PROSER3Q2NL68 480 aa12.63□□□□□ -0.39
HDAC3-208ENST00000476739 NCBP3Q53F19 620 aaKnown RBP12.63□□□□□ -0.39
HDAC3-208ENST00000476739 NGEFQ8N5V2 710 aa12.63□□□□□ -0.39
HDAC3-208ENST00000476739 NECTIN2Q92692 538 aa12.63□□□□□ -0.39
HDAC3-208ENST00000476739 SPINK5Q9NQ38 1064 aaPredicted RBP12.63□□□□□ -0.39
HDAC3-208ENST00000476739 SCN7AQ01118 1682 aa12.62□□□□□ -0.39
HDAC3-208ENST00000476739 A0A087WZG4 1122 aa12.62□□□□□ -0.39
HDAC3-208ENST00000476739 CAMTA2O94983 1202 aa12.62□□□□□ -0.39
HDAC3-208ENST00000476739 TM4SF1P30408 202 aa12.62□□□□□ -0.39
HDAC3-208ENST00000476739 CALD1Q05682 793 aaKnown RBP12.62□□□□□ -0.39
HDAC3-208ENST00000476739 LRP10Q7Z4F1 713 aa12.62□□□□□ -0.39
HDAC3-208ENST00000476739 DZIP3Q86Y13 1208 aaKnown RBP12.62□□□□□ -0.39
HDAC3-208ENST00000476739 C8orf58Q8NAV2 365 aa12.62□□□□□ -0.39
HDAC3-208ENST00000476739 NLGN2Q8NFZ4 835 aa12.62□□□□□ -0.39
HDAC3-208ENST00000476739 BCORQ6W2J9 1755 aa12.61□□□□□ -0.39
HDAC3-208ENST00000476739 ELL2O00472 640 aaPredicted RBP12.61□□□□□ -0.39
HDAC3-208ENST00000476739 NFIXQ14938 502 aa12.61□□□□□ -0.39
HDAC3-208ENST00000476739 DUSP27Q5VZP5 1158 aa12.61□□□□□ -0.39
HDAC3-208ENST00000476739 TBC1D9BQ66K14 1250 aa12.61□□□□□ -0.39
HDAC3-208ENST00000476739 TSPYL6Q8N831 410 aa12.61□□□□□ -0.39
HDAC3-208ENST00000476739 POLRMTO00411 1230 aaKnown RBP12.6□□□□□ -0.39
HDAC3-208ENST00000476739 BICDL1Q6ZP65 573 aa12.6□□□□□ -0.39
HDAC3-208ENST00000476739 TTLL7Q6ZT98 887 aa12.6□□□□□ -0.39
HDAC3-208ENST00000476739 WDR63Q8IWG1 891 aa12.6□□□□□ -0.39
HDAC3-208ENST00000476739 IL16Q14005 1332 aa12.6□□□□□ -0.39
HDAC3-208ENST00000476739 ZNF521Q96K83 1311 aa12.6□□□□□ -0.39
HDAC3-208ENST00000476739 HLFQ16534 295 aa12.59□□□□□ -0.39
HDAC3-208ENST00000476739 NPM2Q86SE8 214 aaKnown RBP12.59□□□□□ -0.39
HDAC3-208ENST00000476739 CHPF2Q9P2E5 772 aa12.59□□□□□ -0.39
HDAC3-208ENST00000476739 PARP3Q9Y6F1 533 aa12.59□□□□□ -0.39
HDAC3-208ENST00000476739 AFDNP55196 1824 aaKnown RBP12.59□□□□□ -0.39
HDAC3-208ENST00000476739 ERBB4Q15303 1308 aa12.59□□□□□ -0.39
HDAC3-208ENST00000476739 FANCIQ9NVI1 1328 aa12.59□□□□□ -0.39
HDAC3-208ENST00000476739 HOXB7P09629 217 aa12.58□□□□□ -0.4
HDAC3-208ENST00000476739 HDGFL1Q5TGJ6 251 aa12.58□□□□□ -0.4
HDAC3-208ENST00000476739 KIF13BQ9NQT8 1826 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms