RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	MMTAG2	Q9BU76	263 aa	Known RBP	4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	AS3MT	Q9HBK9	375 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	GOPC	Q9HD26	462 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	COMMD8	Q9NX08	183 aa		4.2	□□□□□ -1.74
UBR3-208	ENST00000474426	TMEM238L	A0A1B0GVL6	79 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	KIAA2012	Q0VF49	1180 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	MYSM1	Q5VVJ2	828 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	LMBRD2	Q68DH5	695 aa	Predicted RBP	4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	NDUFAF2	Q8N183	169 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	FAM184A	Q8NB25	1140 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	VMP1	Q96GC9	406 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	IPO9	Q96P70	1041 aa	Known RBP	4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	KMT5A	Q9NQR1	393 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	TMEM88B	A6NKF7	163 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	TNNT1	P13805	278 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	GTF2A1	P52655	376 aa	Predicted RBP	4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	POU5F1B	Q06416	359 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	C9orf131	Q5VYM1	1079 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	IQCE	Q6IPM2	695 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	TMC2	Q8TDI7	906 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	CENPT	Q96BT3	561 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	IFT57	Q9NWB7	429 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	CLIC5	Q9NZA1	410 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	TMOD4	Q9NZQ9	345 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	TCEAL9	Q9UHQ7	104 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	TMEM110-MUSTN1	A8MSY1	372 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	CCDC175	P0C221	793 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	HOXC13	P31276	330 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	GPSM2	P81274	684 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	SEPT2	Q15019	361 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	ANKRD45	Q5TZF3	282 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	CCBE1	Q6UXH8	406 aa	Predicted RBP	4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	CCDC73	Q6ZRK6	1079 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	OTUD6A	Q7L8S5	288 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	TATDN2	Q93075	761 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	TMEM87B	Q96K49	555 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	YIPF2	Q9BWQ6	316 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	ZHX3	Q9H4I2	956 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	BRMS1	Q9HCU9	246 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	USP25	Q9UHP3	1055 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	BLOC1S6	Q9UL45	172 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	MAFF	Q9ULX9	164 aa		4.19	□□□□□ -1.74
UBR3-208	ENST00000474426	IFRD1	O00458	451 aa	Predicted RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	CHL1	O00533	1208 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	GUCY2C	P25092	1073 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	SYCP2L	Q5T4T6	812 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	RC3H1	Q5TC82	1133 aa	Known RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	FILIP1	Q7Z7B0	1213 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	C17orf50	Q8WW18	174 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	TEKT1	Q969V4	418 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	NELL2	Q99435	816 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	CENPO	Q9BU64	300 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	CUEDC1	Q9NWM3	386 aa	Predicted RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	TRMT1	Q9NXH9	659 aa	Known RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	LZTS1	Q9Y250	596 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	RAD50	Q92878	1312 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	SHTN1	A0MZ66	631 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	CBLB	Q13191	982 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	TOMM20	Q15388	145 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	DDB1	Q16531	1140 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	AGAP9	Q5VTM2	703 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	ARHGEF25	Q86VW2	580 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	MIGA1	Q8NAN2	632 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	CCDC102A	Q96A19	550 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	TBC1D20	Q96BZ9	403 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	RUNDC1	Q96C34	613 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	CDHR1	Q96JP9	859 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	IRAK4	Q9NWZ3	460 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426		U3KPZ7	1027 aa	Predicted RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	S100B	P04271	92 aa	Predicted RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	JAKMIP3	Q5VZ66	844 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	PODN	Q7Z5L7	613 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	JARID2	Q92833	1246 aa	Predicted RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	SMARCC1	Q92922	1105 aa	Predicted RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	FAM212A	Q96EL1	285 aa		4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	GNE	Q9Y223	722 aa	Known RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	MRPL42	Q9Y6G3	142 aa	Known RBP	4.18	□□□□□ -1.74
UBR3-208	ENST00000474426	PABPN1L	A6NDY0	278 aa	Known RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	PIK3CA	P42336	1068 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	ENOX2	Q16206	610 aa	Known RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	PKN1	Q16512	942 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	PREPL	Q4J6C6	727 aa	Predicted RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	SAPCD2	Q86UD0	394 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	APPL2	Q8NEU8	664 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	KIF2C	Q99661	725 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	DHX36	Q9H2U1	1008 aa	Known RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	ZNF330	Q9Y3S2	320 aa	Predicted RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	KNSTRN	Q9Y448	316 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	C19orf81	C9J6K1	198 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	MME	P08473	750 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	VAMP1	P23763	118 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	ITGAE	P38570	1179 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	RAD51AP2	Q09MP3	1159 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	SAMD14	Q8IZD0	417 aa	Predicted RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	CCDC34	Q96HJ3	373 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	BRINP2	Q9C0B6	783 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	BIN2	Q9UBW5	565 aa	Predicted RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	ASAP1	Q9ULH1	1129 aa		4.17	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms