RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 SOS1Q07889 1333 aaPredicted RBP24.97■■□□□ 1.59
PTCD3-210ENST00000473829 PRAMEF22A3QJZ6 481 aa24.96■■□□□ 1.59
PTCD3-210ENST00000473829 NEUROD2Q15784 382 aa24.96■■□□□ 1.59
PTCD3-210ENST00000473829 LAMB4A4D0S4 1761 aa24.95■■□□□ 1.58
PTCD3-210ENST00000473829 SYT17Q9BSW7 474 aa24.94■■□□□ 1.58
PTCD3-210ENST00000473829 TRIM35Q9UPQ4 493 aa24.94■■□□□ 1.58
PTCD3-210ENST00000473829 RFC4P35249 363 aa24.93■■□□□ 1.58
PTCD3-210ENST00000473829 MRS2Q9HD23 443 aa24.93■■□□□ 1.58
PTCD3-210ENST00000473829 SRP68Q9UHB9 627 aaKnown RBP24.93■■□□□ 1.58
PTCD3-210ENST00000473829 COL15A1P39059 1388 aa24.93■■□□□ 1.58
PTCD3-210ENST00000473829 STARD3NLO95772 234 aa24.92■■□□□ 1.58
PTCD3-210ENST00000473829 GYS1P13807 737 aa24.92■■□□□ 1.58
PTCD3-210ENST00000473829 LMOD3Q0VAK6 560 aa24.92■■□□□ 1.58
PTCD3-210ENST00000473829 USP42Q9H9J4 1324 aaKnown RBP24.91■■□□□ 1.58
PTCD3-210ENST00000473829 CANXP27824 592 aaKnown RBP24.91■■□□□ 1.58
PTCD3-210ENST00000473829 PNISRQ8TF01 805 aaKnown RBP24.91■■□□□ 1.58
PTCD3-210ENST00000473829 TEX13AQ9BXU3 409 aaPredicted RBP24.91■■□□□ 1.58
PTCD3-210ENST00000473829 USP16Q9Y5T5 823 aa24.91■■□□□ 1.58
PTCD3-210ENST00000473829 APAF1O14727 1248 aa24.9■■□□□ 1.58
PTCD3-210ENST00000473829 KLHL34Q8N239 644 aa24.9■■□□□ 1.58
PTCD3-210ENST00000473829 A1BGP04217 495 aa24.89■■□□□ 1.58
PTCD3-210ENST00000473829 SNRPA1P09661 255 aaKnown RBP24.89■■□□□ 1.58
PTCD3-210ENST00000473829 EIF5P55010 431 aaKnown RBP24.88■■□□□ 1.57
PTCD3-210ENST00000473829 EIF4A1P60842 406 aaKnown RBP24.88■■□□□ 1.57
PTCD3-210ENST00000473829 SCN7AQ01118 1682 aa24.88■■□□□ 1.57
PTCD3-210ENST00000473829 MMP10P09238 476 aa24.87■■□□□ 1.57
PTCD3-210ENST00000473829 PIP4K2AP48426 406 aaPredicted RBP24.87■■□□□ 1.57
PTCD3-210ENST00000473829 FKBP8Q14318 412 aa24.86■■□□□ 1.57
PTCD3-210ENST00000473829 NLGN1Q8N2Q7 840 aa24.86■■□□□ 1.57
PTCD3-210ENST00000473829 NLGN2Q8NFZ4 835 aa24.86■■□□□ 1.57
PTCD3-210ENST00000473829 TSPYL4Q9UJ04 414 aa24.86■■□□□ 1.57
PTCD3-210ENST00000473829 USPL1Q5W0Q7 1092 aa24.85■■□□□ 1.57
PTCD3-210ENST00000473829 GIGYF1O75420 1035 aaPredicted RBP24.84■■□□□ 1.57
PTCD3-210ENST00000473829 NARFQ9UHQ1 456 aa24.84■■□□□ 1.57
PTCD3-210ENST00000473829 BCORQ6W2J9 1755 aa24.84■■□□□ 1.57
PTCD3-210ENST00000473829 GOLGB1Q14789 3259 aaKnown RBP24.83■■□□□ 1.57
PTCD3-210ENST00000473829 SENP3-EIF4A1A0A087X0R7 540 aa24.83■■□□□ 1.57
PTCD3-210ENST00000473829 IL6STP40189 918 aaPredicted RBP24.83■■□□□ 1.57
PTCD3-210ENST00000473829 BCL2L12Q9HB09 334 aa24.83■■□□□ 1.57
PTCD3-210ENST00000473829 ZNF330Q9Y3S2 320 aaPredicted RBP24.83■■□□□ 1.57
PTCD3-210ENST00000473829 KIF13BQ9NQT8 1826 aa24.83■■□□□ 1.57
PTCD3-210ENST00000473829 NBPF26B4DH59 902 aa24.82■■□□□ 1.56
PTCD3-210ENST00000473829 ZPR1O75312 459 aa24.82■■□□□ 1.56
PTCD3-210ENST00000473829 NBPF10Q6P3W6 841 aaKnown RBP24.82■■□□□ 1.56
PTCD3-210ENST00000473829 NBPF15Q8N660 670 aa24.82■■□□□ 1.56
PTCD3-210ENST00000473829 KIAA1551Q9HCM1 1747 aa24.81■■□□□ 1.56
PTCD3-210ENST00000473829 UTRNP46939 3433 aa24.81■■□□□ 1.56
PTCD3-210ENST00000473829 BABAM1Q9NWV8 329 aa24.81■■□□□ 1.56
PTCD3-210ENST00000473829 CHL1O00533 1208 aa24.8■■□□□ 1.56
PTCD3-210ENST00000473829 DDR1Q08345 913 aa24.8■■□□□ 1.56
PTCD3-210ENST00000473829 TBC1D2BQ9UPU7 963 aa24.79■■□□□ 1.56
PTCD3-210ENST00000473829 LAS1LQ9Y4W2 734 aaKnown RBP24.79■■□□□ 1.56
PTCD3-210ENST00000473829 CD2APQ9Y5K6 639 aa24.79■■□□□ 1.56
PTCD3-210ENST00000473829 C10orf71Q711Q0 1435 aa24.78■■□□□ 1.56
PTCD3-210ENST00000473829 AFDNP55196 1824 aaKnown RBP24.78■■□□□ 1.56
PTCD3-210ENST00000473829 A0A087WZG4 1122 aa24.78■■□□□ 1.56
PTCD3-210ENST00000473829 TM4SF1P30408 202 aa24.77■■□□□ 1.56
PTCD3-210ENST00000473829 KRT24Q2M2I5 525 aa24.77■■□□□ 1.56
PTCD3-210ENST00000473829 NRXN2Q9P2S2 1712 aa24.77■■□□□ 1.56
PTCD3-210ENST00000473829 POLRMTO00411 1230 aaKnown RBP24.76■■□□□ 1.55
PTCD3-210ENST00000473829 PARP3Q9Y6F1 533 aa24.76■■□□□ 1.55
PTCD3-210ENST00000473829 CAMTA2O94983 1202 aa24.75■■□□□ 1.55
PTCD3-210ENST00000473829 NFIXQ14938 502 aa24.75■■□□□ 1.55
PTCD3-210ENST00000473829 N4BP2Q86UW6 1770 aaPredicted RBP24.75■■□□□ 1.55
PTCD3-210ENST00000473829 ZNF853P0CG23 659 aa24.74■■□□□ 1.55
PTCD3-210ENST00000473829 DZIP3Q86Y13 1208 aaKnown RBP24.74■■□□□ 1.55
PTCD3-210ENST00000473829 CFAP44Q96MT7 982 aa24.74■■□□□ 1.55
PTCD3-210ENST00000473829 PXDNLA1KZ92 1463 aa24.73■■□□□ 1.55
PTCD3-210ENST00000473829 FAM9BQ8IZU0 186 aa24.73■■□□□ 1.55
PTCD3-210ENST00000473829 MBIPQ9NS73 344 aa24.73■■□□□ 1.55
PTCD3-210ENST00000473829 TBC1D9BQ66K14 1250 aa24.71■■□□□ 1.55
PTCD3-210ENST00000473829 IFT57Q9NWB7 429 aa24.71■■□□□ 1.55
PTCD3-210ENST00000473829 BICDL1Q6ZP65 573 aa24.7■■□□□ 1.54
PTCD3-210ENST00000473829 NPM2Q86SE8 214 aaKnown RBP24.7■■□□□ 1.54
PTCD3-210ENST00000473829 MYL6BP14649 208 aa24.69■■□□□ 1.54
PTCD3-210ENST00000473829 EIF2S2P20042 333 aaKnown RBP24.69■■□□□ 1.54
PTCD3-210ENST00000473829 CCDC27Q2M243 656 aa24.69■■□□□ 1.54
PTCD3-210ENST00000473829 WWC1Q8IX03 1113 aa24.69■■□□□ 1.54
PTCD3-210ENST00000473829 BRCA1P38398 1863 aaKnown RBP24.68■■□□□ 1.54
PTCD3-210ENST00000473829 YBX3P16989 372 aaKnown RBP eCLIP24.68■■□□□ 1.54
PTCD3-210ENST00000473829 CALD1Q05682 793 aaKnown RBP24.68■■□□□ 1.54
PTCD3-210ENST00000473829 PDIA6Q15084 440 aa24.68■■□□□ 1.54
PTCD3-210ENST00000473829 PELP1Q8IZL8 1130 aaKnown RBP24.68■■□□□ 1.54
PTCD3-210ENST00000473829 NGEFQ8N5V2 710 aa24.68■■□□□ 1.54
PTCD3-210ENST00000473829 ERBB4Q15303 1308 aa24.67■■□□□ 1.54
PTCD3-210ENST00000473829 DCAF8L1A6NGE4 600 aa24.67■■□□□ 1.54
PTCD3-210ENST00000473829 GNAI1P63096 354 aa24.67■■□□□ 1.54
PTCD3-210ENST00000473829 PROSER3Q2NL68 480 aa24.67■■□□□ 1.54
PTCD3-210ENST00000473829 LRP10Q7Z4F1 713 aa24.67■■□□□ 1.54
PTCD3-210ENST00000473829 NECTIN2Q92692 538 aa24.67■■□□□ 1.54
PTCD3-210ENST00000473829 WWC3Q9ULE0 1092 aa24.67■■□□□ 1.54
PTCD3-210ENST00000473829 CARMIL3Q8ND23 1372 aa24.67■■□□□ 1.54
PTCD3-210ENST00000473829 ANXA1P04083 346 aa24.66■■□□□ 1.54
PTCD3-210ENST00000473829 SERPINB2P05120 415 aa24.66■■□□□ 1.54
PTCD3-210ENST00000473829 GPR162Q16538 588 aa24.66■■□□□ 1.54
PTCD3-210ENST00000473829 TTLL7Q6ZT98 887 aa24.66■■□□□ 1.54
PTCD3-210ENST00000473829 SALL2Q9Y467 1007 aaPredicted RBP24.66■■□□□ 1.54
PTCD3-210ENST00000473829 NUP98P52948 1817 aa24.65■■□□□ 1.54
PTCD3-210ENST00000473829 ANKRD31Q8N7Z5 1873 aa24.65■■□□□ 1.54
PTCD3-210ENST00000473829 HLFQ16534 295 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms