RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 ATF5Q9Y2D1 282 aaPredicted RBP18.55■□□□□ 0.56
BRCA1-211ENST00000472490 TAF1LQ8IZX4 1826 aa18.55■□□□□ 0.56
BRCA1-211ENST00000472490 VIRMAQ69YN4 1812 aaKnown RBP18.54■□□□□ 0.56
BRCA1-211ENST00000472490 POLD1P28340 1107 aa18.54■□□□□ 0.56
BRCA1-211ENST00000472490 NGEFQ8N5V2 710 aa18.54■□□□□ 0.56
BRCA1-211ENST00000472490 CASZ1Q86V15 1759 aa18.54■□□□□ 0.56
BRCA1-211ENST00000472490 QSER1Q2KHR3 1735 aa18.54■□□□□ 0.56
BRCA1-211ENST00000472490 UBR2Q8IWV8 1755 aa18.53■□□□□ 0.56
BRCA1-211ENST00000472490 EIF4A1P60842 406 aaKnown RBP18.53■□□□□ 0.56
BRCA1-211ENST00000472490 CFAP44Q96MT7 982 aa18.53■□□□□ 0.56
BRCA1-211ENST00000472490 LAS1LQ9Y4W2 734 aaKnown RBP18.53■□□□□ 0.56
BRCA1-211ENST00000472490 LRP5O75197 1615 aa18.52■□□□□ 0.56
BRCA1-211ENST00000472490 CHL1O00533 1208 aa18.52■□□□□ 0.56
BRCA1-211ENST00000472490 AMIGO3Q86WK7 504 aa18.52■□□□□ 0.56
BRCA1-211ENST00000472490 ARHGEF1Q92888 912 aaKnown RBP18.52■□□□□ 0.56
BRCA1-211ENST00000472490 DLG5Q8TDM6 1919 aa18.52■□□□□ 0.56
BRCA1-211ENST00000472490 GIGYF1O75420 1035 aaPredicted RBP18.51■□□□□ 0.55
BRCA1-211ENST00000472490 IFT57Q9NWB7 429 aa18.51■□□□□ 0.55
BRCA1-211ENST00000472490 ZBTB1Q9Y2K1 713 aa18.51■□□□□ 0.55
BRCA1-211ENST00000472490 COL5A3P25940 1745 aaPredicted RBP18.51■□□□□ 0.55
BRCA1-211ENST00000472490 TJP1Q07157 1748 aa18.51■□□□□ 0.55
BRCA1-211ENST00000472490 SOS1Q07889 1333 aaPredicted RBP18.5■□□□□ 0.55
BRCA1-211ENST00000472490 A0A087WZG4 1122 aa18.5■□□□□ 0.55
BRCA1-211ENST00000472490 CANXP27824 592 aaKnown RBP18.5■□□□□ 0.55
BRCA1-211ENST00000472490 PTGER2P43116 358 aa18.5■□□□□ 0.55
BRCA1-211ENST00000472490 GNAI1P63096 354 aa18.5■□□□□ 0.55
BRCA1-211ENST00000472490 USP16Q9Y5T5 823 aa18.5■□□□□ 0.55
BRCA1-211ENST00000472490 ZPR1O75312 459 aa18.49■□□□□ 0.55
BRCA1-211ENST00000472490 IL6STP40189 918 aaPredicted RBP18.49■□□□□ 0.55
BRCA1-211ENST00000472490 SMIM5Q71RC9 77 aa18.49■□□□□ 0.55
BRCA1-211ENST00000472490 WWC1Q8IX03 1113 aa18.49■□□□□ 0.55
BRCA1-211ENST00000472490 NLGN1Q8N2Q7 840 aa18.49■□□□□ 0.55
BRCA1-211ENST00000472490 A1BGP04217 495 aa18.48■□□□□ 0.55
BRCA1-211ENST00000472490 ARXQ96QS3 562 aa18.48■□□□□ 0.55
BRCA1-211ENST00000472490 SGIP1Q9BQI5 828 aa18.48■□□□□ 0.55
BRCA1-211ENST00000472490 COL15A1P39059 1388 aa18.47■□□□□ 0.55
BRCA1-211ENST00000472490 PRAMEF22A3QJZ6 481 aa18.47■□□□□ 0.55
BRCA1-211ENST00000472490 EIF5P55010 431 aaKnown RBP18.47■□□□□ 0.55
BRCA1-211ENST00000472490 MSL1Q68DK7 614 aa18.47■□□□□ 0.55
BRCA1-211ENST00000472490 UBR3Q6ZT12 1888 aa18.46■□□□□ 0.55
BRCA1-211ENST00000472490 ZNF853P0CG23 659 aa18.46■□□□□ 0.55
BRCA1-211ENST00000472490 CACNB1Q02641 598 aaPredicted RBP18.46■□□□□ 0.55
BRCA1-211ENST00000472490 MIER1Q8N108 512 aa18.46■□□□□ 0.55
BRCA1-211ENST00000472490 ZNF330Q9Y3S2 320 aaPredicted RBP18.46■□□□□ 0.55
BRCA1-211ENST00000472490 IL16Q14005 1332 aa18.46■□□□□ 0.55
BRCA1-211ENST00000472490 USP42Q9H9J4 1324 aaKnown RBP18.46■□□□□ 0.55
BRCA1-211ENST00000472490 KDM3BQ7LBC6 1761 aa18.45■□□□□ 0.54
BRCA1-211ENST00000472490 TUBGCP6Q96RT7 1819 aa18.45■□□□□ 0.54
BRCA1-211ENST00000472490 WDR63Q8IWG1 891 aa18.45■□□□□ 0.54
BRCA1-211ENST00000472490 CHMP4AQ9BY43 222 aa18.45■□□□□ 0.54
BRCA1-211ENST00000472490 MBIPQ9NS73 344 aa18.45■□□□□ 0.54
BRCA1-211ENST00000472490 NARFQ9UHQ1 456 aa18.45■□□□□ 0.54
BRCA1-211ENST00000472490 ERBB4Q15303 1308 aa18.45■□□□□ 0.54
BRCA1-211ENST00000472490 HOXB7P09629 217 aa18.44■□□□□ 0.54
BRCA1-211ENST00000472490 GYS1P13807 737 aa18.44■□□□□ 0.54
BRCA1-211ENST00000472490 SALL2Q9Y467 1007 aaPredicted RBP18.44■□□□□ 0.54
BRCA1-211ENST00000472490 USPL1Q5W0Q7 1092 aa18.42■□□□□ 0.54
BRCA1-211ENST00000472490 SENP3-EIF4A1A0A087X0R7 540 aa18.41■□□□□ 0.54
BRCA1-211ENST00000472490 MMP10P09238 476 aa18.41■□□□□ 0.54
BRCA1-211ENST00000472490 EIF2S2P20042 333 aaKnown RBP18.41■□□□□ 0.54
BRCA1-211ENST00000472490 DZIP3Q86Y13 1208 aaKnown RBP18.41■□□□□ 0.54
BRCA1-211ENST00000472490 SRP68Q9UHB9 627 aaKnown RBP18.41■□□□□ 0.54
BRCA1-211ENST00000472490 PARP3Q9Y6F1 533 aa18.4■□□□□ 0.54
BRCA1-211ENST00000472490 MYH14Q7Z406 1995 aaKnown RBP18.4■□□□□ 0.54
BRCA1-211ENST00000472490 NBPF26B4DH59 902 aa18.39■□□□□ 0.53
BRCA1-211ENST00000472490 RGL2O15211 777 aa18.39■□□□□ 0.53
BRCA1-211ENST00000472490 PIP4K2AP48426 406 aaPredicted RBP18.39■□□□□ 0.53
BRCA1-211ENST00000472490 FKBP8Q14318 412 aa18.39■□□□□ 0.53
BRCA1-211ENST00000472490 DUSP27Q5VZP5 1158 aa18.39■□□□□ 0.53
BRCA1-211ENST00000472490 NBPF10Q6P3W6 841 aaKnown RBP18.39■□□□□ 0.53
BRCA1-211ENST00000472490 NBPF15Q8N660 670 aa18.39■□□□□ 0.53
BRCA1-211ENST00000472490 FHDC1Q9C0D6 1143 aaPredicted RBP18.39■□□□□ 0.53
BRCA1-211ENST00000472490 TBC1D2BQ9UPU7 963 aa18.39■□□□□ 0.53
BRCA1-211ENST00000472490 ZNF652Q9Y2D9 606 aa18.39■□□□□ 0.53
BRCA1-211ENST00000472490 HDGFL1Q5TGJ6 251 aa18.38■□□□□ 0.53
BRCA1-211ENST00000472490 MYH16Q9H6N6 1097 aa18.38■□□□□ 0.53
BRCA1-211ENST00000472490 MYL6BP14649 208 aa18.37■□□□□ 0.53
BRCA1-211ENST00000472490 KRT24Q2M2I5 525 aa18.37■□□□□ 0.53
BRCA1-211ENST00000472490 CLEC4GQ6UXB4 293 aa18.37■□□□□ 0.53
BRCA1-211ENST00000472490 KLHL34Q8N239 644 aa18.37■□□□□ 0.53
BRCA1-211ENST00000472490 SYT17Q9BSW7 474 aa18.37■□□□□ 0.53
BRCA1-211ENST00000472490 CD2APQ9Y5K6 639 aa18.37■□□□□ 0.53
BRCA1-211ENST00000472490 SRCAPQ6ZRS2 3230 aa18.37■□□□□ 0.53
BRCA1-211ENST00000472490 GOLGA2Q08379 1002 aa18.36■□□□□ 0.53
BRCA1-211ENST00000472490 COL24A1Q17RW2 1714 aa18.36■□□□□ 0.53
BRCA1-211ENST00000472490 KIF6Q6ZMV9 814 aa18.36■□□□□ 0.53
BRCA1-211ENST00000472490 DDX21Q9NR30 783 aaKnown RBP eCLIP18.36■□□□□ 0.53
BRCA1-211ENST00000472490 DBF4Q9UBU7 674 aaPredicted RBP18.36■□□□□ 0.53
BRCA1-211ENST00000472490 LAMB4A4D0S4 1761 aa18.35■□□□□ 0.53
BRCA1-211ENST00000472490 CAMTA2O94983 1202 aa18.35■□□□□ 0.53
BRCA1-211ENST00000472490 TM4SF1P30408 202 aa18.35■□□□□ 0.53
BRCA1-211ENST00000472490 TSR2Q969E8 191 aaKnown RBP18.35■□□□□ 0.53
BRCA1-211ENST00000472490 C4AP0C0L4 1744 aa18.35■□□□□ 0.53
BRCA1-211ENST00000472490 ERVV-1B6SEH8 477 aa18.34■□□□□ 0.53
BRCA1-211ENST00000472490 NECTIN2Q92692 538 aa18.34■□□□□ 0.53
BRCA1-211ENST00000472490 BCL2L12Q9HB09 334 aa18.34■□□□□ 0.53
BRCA1-211ENST00000472490 FANCIQ9NVI1 1328 aa18.33■□□□□ 0.53
BRCA1-211ENST00000472490 ELL2O00472 640 aaPredicted RBP18.33■□□□□ 0.52
BRCA1-211ENST00000472490 NFIXQ14938 502 aa18.33■□□□□ 0.52
BRCA1-211ENST00000472490 PDIA6Q15084 440 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms