RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	PLEKHF1	Q96S99	279 aa		19.55	■□□□□ 0.72
SSR4-208	ENST00000471880	SRP68	Q9UHB9	627 aa	Known RBP	19.55	■□□□□ 0.72
SSR4-208	ENST00000471880	HTATSF1	O43719	755 aa	Known RBP	19.54	■□□□□ 0.72
SSR4-208	ENST00000471880	MMP10	P09238	476 aa		19.54	■□□□□ 0.72
SSR4-208	ENST00000471880	VSIG10	Q8N0Z9	540 aa		19.54	■□□□□ 0.72
SSR4-208	ENST00000471880	ZBTB1	Q9Y2K1	713 aa		19.54	■□□□□ 0.72
SSR4-208	ENST00000471880	HEG1	Q9ULI3	1381 aa		19.54	■□□□□ 0.72
SSR4-208	ENST00000471880	ZPR1	O75312	459 aa		19.53	■□□□□ 0.72
SSR4-208	ENST00000471880	NEUROD2	Q15784	382 aa		19.53	■□□□□ 0.72
SSR4-208	ENST00000471880	NPM2	Q86SE8	214 aa	Known RBP	19.53	■□□□□ 0.72
SSR4-208	ENST00000471880	NLGN1	Q8N2Q7	840 aa		19.53	■□□□□ 0.72
SSR4-208	ENST00000471880	THUMPD2	Q9BTF0	503 aa	Known RBP	19.53	■□□□□ 0.72
SSR4-208	ENST00000471880	MIS18A	Q9NYP9	233 aa		19.53	■□□□□ 0.72
SSR4-208	ENST00000471880	AFDN	P55196	1824 aa	Known RBP	19.53	■□□□□ 0.72
SSR4-208	ENST00000471880	GYS1	P13807	737 aa		19.52	■□□□□ 0.72
SSR4-208	ENST00000471880	RRP7A	Q9Y3A4	280 aa	Known RBP	19.52	■□□□□ 0.72
SSR4-208	ENST00000471880	BRCA1	P38398	1863 aa	Known RBP	19.52	■□□□□ 0.71
SSR4-208	ENST00000471880	YBX3	P16989	372 aa	Known RBP eCLIP	19.51	■□□□□ 0.71	4e-12	■■■□□ 16.3
SSR4-208	ENST00000471880	RIPK4	P57078	832 aa		19.51	■□□□□ 0.71
SSR4-208	ENST00000471880	TAF7	Q15545	349 aa	Predicted RBP	19.51	■□□□□ 0.71
SSR4-208	ENST00000471880	TEX13A	Q9BXU3	409 aa	Predicted RBP	19.51	■□□□□ 0.71
SSR4-208	ENST00000471880	WWC3	Q9ULE0	1092 aa		19.51	■□□□□ 0.71
SSR4-208	ENST00000471880	PARP3	Q9Y6F1	533 aa		19.51	■□□□□ 0.71
SSR4-208	ENST00000471880	KDM3B	Q7LBC6	1761 aa		19.51	■□□□□ 0.71
SSR4-208	ENST00000471880	SOS1	Q07889	1333 aa	Predicted RBP	19.51	■□□□□ 0.71
SSR4-208	ENST00000471880	COL15A1	P39059	1388 aa		19.5	■□□□□ 0.71
SSR4-208	ENST00000471880	USP42	Q9H9J4	1324 aa	Known RBP	19.5	■□□□□ 0.71
SSR4-208	ENST00000471880	YY1	P25490	414 aa		19.49	■□□□□ 0.71
SSR4-208	ENST00000471880	USPL1	Q5W0Q7	1092 aa		19.49	■□□□□ 0.71
SSR4-208	ENST00000471880	ANP32C	O43423	234 aa		19.48	■□□□□ 0.71
SSR4-208	ENST00000471880	ADAMTS8	Q9UP79	889 aa		19.48	■□□□□ 0.71
SSR4-208	ENST00000471880	CD2AP	Q9Y5K6	639 aa		19.48	■□□□□ 0.71
SSR4-208	ENST00000471880	TMPO	P42166	694 aa	Known RBP	19.47	■□□□□ 0.71
SSR4-208	ENST00000471880	LMOD3	Q0VAK6	560 aa		19.47	■□□□□ 0.71
SSR4-208	ENST00000471880	FKBP8	Q14318	412 aa		19.47	■□□□□ 0.71
SSR4-208	ENST00000471880	PNISR	Q8TF01	805 aa	Known RBP	19.47	■□□□□ 0.71
SSR4-208	ENST00000471880	SCN7A	Q01118	1682 aa		19.46	■□□□□ 0.71
SSR4-208	ENST00000471880	C10orf71	Q711Q0	1435 aa		19.46	■□□□□ 0.71
SSR4-208	ENST00000471880	PRAMEF22	A3QJZ6	481 aa		19.46	■□□□□ 0.71
SSR4-208	ENST00000471880	A1BG	P04217	495 aa		19.46	■□□□□ 0.71
SSR4-208	ENST00000471880	SNRPA1	P09661	255 aa	Known RBP	19.46	■□□□□ 0.71
SSR4-208	ENST00000471880	PIP4K2A	P48426	406 aa	Predicted RBP	19.46	■□□□□ 0.71
SSR4-208	ENST00000471880	RUNDC1	Q96C34	613 aa		19.46	■□□□□ 0.71
SSR4-208	ENST00000471880	NRXN2	Q9P2S2	1712 aa		19.45	■□□□□ 0.7
SSR4-208	ENST00000471880	LAMB4	A4D0S4	1761 aa		19.45	■□□□□ 0.7
SSR4-208	ENST00000471880	DDR1	Q08345	913 aa		19.45	■□□□□ 0.7
SSR4-208	ENST00000471880	USP16	Q9Y5T5	823 aa		19.45	■□□□□ 0.7
SSR4-208	ENST00000471880	PXDNL	A1KZ92	1463 aa		19.45	■□□□□ 0.7
SSR4-208	ENST00000471880	BCOR	Q6W2J9	1755 aa		19.44	■□□□□ 0.7
SSR4-208	ENST00000471880		A0A087WZG4	1122 aa		19.44	■□□□□ 0.7
SSR4-208	ENST00000471880	BICDL1	Q6ZP65	573 aa		19.44	■□□□□ 0.7
SSR4-208	ENST00000471880	BCL2L12	Q9HB09	334 aa		19.44	■□□□□ 0.7
SSR4-208	ENST00000471880	NARF	Q9UHQ1	456 aa		19.44	■□□□□ 0.7
SSR4-208	ENST00000471880	TSPYL4	Q9UJ04	414 aa		19.44	■□□□□ 0.7
SSR4-208	ENST00000471880	TBC1D2B	Q9UPU7	963 aa		19.44	■□□□□ 0.7
SSR4-208	ENST00000471880	LAS1L	Q9Y4W2	734 aa	Known RBP	19.44	■□□□□ 0.7
SSR4-208	ENST00000471880	ANKRD31	Q8N7Z5	1873 aa		19.41	■□□□□ 0.7
SSR4-208	ENST00000471880	IL6ST	P40189	918 aa	Predicted RBP	19.41	■□□□□ 0.7
SSR4-208	ENST00000471880	EIF5	P55010	431 aa	Known RBP	19.41	■□□□□ 0.7
SSR4-208	ENST00000471880	NPHP1	O15259	732 aa		19.4	■□□□□ 0.7
SSR4-208	ENST00000471880	NGEF	Q8N5V2	710 aa		19.4	■□□□□ 0.7
SSR4-208	ENST00000471880	MRS2	Q9HD23	443 aa		19.4	■□□□□ 0.7
SSR4-208	ENST00000471880	TM4SF1	P30408	202 aa		19.39	■□□□□ 0.69
SSR4-208	ENST00000471880	DZIP3	Q86Y13	1208 aa	Known RBP	19.39	■□□□□ 0.69
SSR4-208	ENST00000471880	ARFGEF1	Q9Y6D6	1849 aa		19.39	■□□□□ 0.69
SSR4-208	ENST00000471880	SENP3-EIF4A1	A0A087X0R7	540 aa		19.38	■□□□□ 0.69
SSR4-208	ENST00000471880		A0A0G2JLW4	131 aa		19.38	■□□□□ 0.69
SSR4-208	ENST00000471880	POLRMT	O00411	1230 aa	Known RBP	19.38	■□□□□ 0.69
SSR4-208	ENST00000471880	EIF4A1	P60842	406 aa	Known RBP	19.38	■□□□□ 0.69
SSR4-208	ENST00000471880	NFIX	Q14938	502 aa		19.38	■□□□□ 0.69
SSR4-208	ENST00000471880	CCDC184	Q52MB2	194 aa		19.38	■□□□□ 0.69
SSR4-208	ENST00000471880	DLEC1	Q9Y238	1755 aa		19.38	■□□□□ 0.69
SSR4-208	ENST00000471880	APAF1	O14727	1248 aa		19.37	■□□□□ 0.69
SSR4-208	ENST00000471880	GRIN3B	O60391	1043 aa		19.37	■□□□□ 0.69
SSR4-208	ENST00000471880	SERPINB2	P05120	415 aa		19.36	■□□□□ 0.69
SSR4-208	ENST00000471880	MYL6B	P14649	208 aa		19.36	■□□□□ 0.69
SSR4-208	ENST00000471880	GIGYF1	O75420	1035 aa	Predicted RBP	19.35	■□□□□ 0.69
SSR4-208	ENST00000471880	DPEP1	P16444	411 aa		19.35	■□□□□ 0.69
SSR4-208	ENST00000471880	EIF2S2	P20042	333 aa	Known RBP	19.35	■□□□□ 0.69
SSR4-208	ENST00000471880	TGFB2	P61812	414 aa		19.35	■□□□□ 0.69
SSR4-208	ENST00000471880	TBC1D9B	Q66K14	1250 aa		19.35	■□□□□ 0.69
SSR4-208	ENST00000471880	ZNF784	Q8NCA9	323 aa	Predicted RBP	19.35	■□□□□ 0.69
SSR4-208	ENST00000471880	BCS1L	Q9Y276	419 aa		19.35	■□□□□ 0.69
SSR4-208	ENST00000471880	COL11A2	P13942	1736 aa	Predicted RBP	19.34	■□□□□ 0.69
SSR4-208	ENST00000471880	CARMIL3	Q8ND23	1372 aa		19.34	■□□□□ 0.69
SSR4-208	ENST00000471880	NBPF26	B4DH59	902 aa		19.34	■□□□□ 0.69
SSR4-208	ENST00000471880	KCNA3	P22001	575 aa		19.34	■□□□□ 0.69
SSR4-208	ENST00000471880	NBPF10	Q6P3W6	841 aa	Known RBP	19.34	■□□□□ 0.69
SSR4-208	ENST00000471880	NBPF15	Q8N660	670 aa		19.34	■□□□□ 0.69
SSR4-208	ENST00000471880	TRIM35	Q9UPQ4	493 aa		19.34	■□□□□ 0.69
SSR4-208	ENST00000471880	NECTIN2	Q92692	538 aa		19.33	■□□□□ 0.68
SSR4-208	ENST00000471880	ZNF652	Q9Y2D9	606 aa		19.33	■□□□□ 0.68
SSR4-208	ENST00000471880	NUP98	P52948	1817 aa		19.32	■□□□□ 0.68
SSR4-208	ENST00000471880	CAMTA2	O94983	1202 aa		19.32	■□□□□ 0.68
SSR4-208	ENST00000471880	SETDB2	Q96T68	719 aa		19.32	■□□□□ 0.68
SSR4-208	ENST00000471880	CACNA1S	Q13698	1873 aa		19.32	■□□□□ 0.68
SSR4-208	ENST00000471880	CHRNA5	P30532	468 aa		19.31	■□□□□ 0.68
SSR4-208	ENST00000471880	CCDC24	Q8N4L8	307 aa		19.31	■□□□□ 0.68
SSR4-208	ENST00000471880	SBF1	O95248	1867 aa		19.31	■□□□□ 0.68
SSR4-208	ENST00000471880	FAM177B	A6PVY3	158 aa		19.3	■□□□□ 0.68

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