RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 CNTNAP4Q9C0A0 1308 aa19.64■□□□□ 0.73
NPHP4-205ENST00000466897 ERBB4Q15303 1308 aa19.63■□□□□ 0.73
NPHP4-205ENST00000466897 STARD3NLO95772 234 aa19.63■□□□□ 0.73
NPHP4-205ENST00000466897 EXOSC9Q06265 439 aaKnown RBP19.63■□□□□ 0.73
NPHP4-205ENST00000466897 KRT24Q2M2I5 525 aa19.63■□□□□ 0.73
NPHP4-205ENST00000466897 DNAJC10Q8IXB1 793 aa19.63■□□□□ 0.73
NPHP4-205ENST00000466897 CYP19A1P11511 503 aaPredicted RBP19.62■□□□□ 0.73
NPHP4-205ENST00000466897 TWISTNBQ3B726 338 aaPredicted RBP19.62■□□□□ 0.73
NPHP4-205ENST00000466897 RC3H1Q5TC82 1133 aaKnown RBP19.62■□□□□ 0.73
NPHP4-205ENST00000466897 ZNF428Q96B54 188 aa19.62■□□□□ 0.73
NPHP4-205ENST00000466897 PRAMEF22A3QJZ6 481 aa19.61■□□□□ 0.73
NPHP4-205ENST00000466897 TSPYL6Q8N831 410 aa19.61■□□□□ 0.73
NPHP4-205ENST00000466897 LINC00116Q8NCU8 138 aa19.61■□□□□ 0.73
NPHP4-205ENST00000466897 USP16Q9Y5T5 823 aa19.61■□□□□ 0.73
NPHP4-205ENST00000466897 VAMP4O75379 141 aa19.6■□□□□ 0.73
NPHP4-205ENST00000466897 C4AP0C0L4 1744 aa19.59■□□□□ 0.73
NPHP4-205ENST00000466897 CRKLP46109 303 aaKnown RBP19.58■□□□□ 0.72
NPHP4-205ENST00000466897 KCNQ4P56696 695 aa19.58■□□□□ 0.72
NPHP4-205ENST00000466897 HDGFL1Q5TGJ6 251 aa19.58■□□□□ 0.72
NPHP4-205ENST00000466897 CCDC87Q9NVE4 849 aa19.58■□□□□ 0.72
NPHP4-205ENST00000466897 CCDC30Q5VVM6 783 aa19.57■□□□□ 0.72
NPHP4-205ENST00000466897 INTS5Q6P9B9 1019 aaKnown RBP19.57■□□□□ 0.72
NPHP4-205ENST00000466897 ELL2O00472 640 aaPredicted RBP19.56■□□□□ 0.72
NPHP4-205ENST00000466897 AKT1S1Q96B36 256 aa19.56■□□□□ 0.72
NPHP4-205ENST00000466897 BCORQ6W2J9 1755 aa19.56■□□□□ 0.72
NPHP4-205ENST00000466897 DBF4Q9UBU7 674 aaPredicted RBP19.55■□□□□ 0.72
NPHP4-205ENST00000466897 EIF2S2P20042 333 aaKnown RBP19.54■□□□□ 0.72
NPHP4-205ENST00000466897 IL6STP40189 918 aaPredicted RBP19.54■□□□□ 0.72
NPHP4-205ENST00000466897 AK7Q96M32 723 aa19.54■□□□□ 0.72
NPHP4-205ENST00000466897 DDX21Q9NR30 783 aaKnown RBP eCLIP19.54■□□□□ 0.72
NPHP4-205ENST00000466897 ZBTB1Q9Y2K1 713 aa19.54■□□□□ 0.72
NPHP4-205ENST00000466897 SCN7AQ01118 1682 aa19.54■□□□□ 0.72
NPHP4-205ENST00000466897 RPS6KA4O75676 772 aa19.53■□□□□ 0.72
NPHP4-205ENST00000466897 A1BGP04217 495 aa19.53■□□□□ 0.72
NPHP4-205ENST00000466897 ADRA2BP18089 450 aa19.53■□□□□ 0.72
NPHP4-205ENST00000466897 PDIA6Q15084 440 aa19.53■□□□□ 0.72
NPHP4-205ENST00000466897 ALDH1L2Q3SY69 923 aa19.53■□□□□ 0.72
NPHP4-205ENST00000466897 NBPF26B4DH59 902 aa19.52■□□□□ 0.72
NPHP4-205ENST00000466897 SSFA2P28290 1259 aa19.52■□□□□ 0.72
NPHP4-205ENST00000466897 EIF5P55010 431 aaKnown RBP19.52■□□□□ 0.72
NPHP4-205ENST00000466897 ZNF827Q17R98 1081 aa19.52■□□□□ 0.72
NPHP4-205ENST00000466897 NBPF14Q5TI25 921 aa19.52■□□□□ 0.72
NPHP4-205ENST00000466897 NBPF10Q6P3W6 841 aaKnown RBP19.52■□□□□ 0.72
NPHP4-205ENST00000466897 LRP10Q7Z4F1 713 aa19.52■□□□□ 0.72
NPHP4-205ENST00000466897 NBPF15Q8N660 670 aa19.52■□□□□ 0.72
NPHP4-205ENST00000466897 STK31Q9BXU1 1019 aa19.52■□□□□ 0.72
NPHP4-205ENST00000466897 GNPATO15228 680 aa19.51■□□□□ 0.71
NPHP4-205ENST00000466897 SLC15A2Q16348 729 aa19.51■□□□□ 0.71
NPHP4-205ENST00000466897 ANO8Q9HCE9 1232 aaPredicted RBP19.51■□□□□ 0.71
NPHP4-205ENST00000466897 HYPKQ9NX55 129 aa19.51■□□□□ 0.71
NPHP4-205ENST00000466897 STK32BQ9NY57 414 aa19.51■□□□□ 0.71
NPHP4-205ENST00000466897 CHPF2Q9P2E5 772 aa19.51■□□□□ 0.71
NPHP4-205ENST00000466897 RTCBQ9Y3I0 505 aaKnown RBP19.51■□□□□ 0.71
NPHP4-205ENST00000466897 COL15A1P39059 1388 aa19.51■□□□□ 0.71
NPHP4-205ENST00000466897 CASZ1Q86V15 1759 aa19.51■□□□□ 0.71
NPHP4-205ENST00000466897 ARFGEF2Q9Y6D5 1785 aa19.5■□□□□ 0.71
NPHP4-205ENST00000466897 BRPF1P55201 1214 aaPredicted RBP19.5■□□□□ 0.71
NPHP4-205ENST00000466897 FLAD1Q8NFF5 587 aa19.5■□□□□ 0.71
NPHP4-205ENST00000466897 NUP98P52948 1817 aa19.49■□□□□ 0.71
NPHP4-205ENST00000466897 CANXP27824 592 aaKnown RBP19.49■□□□□ 0.71
NPHP4-205ENST00000466897 NECTIN2Q92692 538 aa19.49■□□□□ 0.71
NPHP4-205ENST00000466897 ANKRD36CQ5JPF3 1778 aa19.49■□□□□ 0.71
NPHP4-205ENST00000466897 N4BP2Q86UW6 1770 aaPredicted RBP19.48■□□□□ 0.71
NPHP4-205ENST00000466897 A0A087WZG4 1122 aa19.48■□□□□ 0.71
NPHP4-205ENST00000466897 RGL2O15211 777 aa19.48■□□□□ 0.71
NPHP4-205ENST00000466897 RARSP54136 660 aaKnown RBP19.48■□□□□ 0.71
NPHP4-205ENST00000466897 PROSER3Q2NL68 480 aa19.48■□□□□ 0.71
NPHP4-205ENST00000466897 TFCP2L1Q9NZI6 479 aa19.48■□□□□ 0.71
NPHP4-205ENST00000466897 COL24A1Q17RW2 1714 aa19.48■□□□□ 0.71
NPHP4-205ENST00000466897 SSH1Q8WYL5 1049 aa19.47■□□□□ 0.71
NPHP4-205ENST00000466897 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.46■□□□□ 0.71
NPHP4-205ENST00000466897 SLC4A2P04920 1241 aa19.46■□□□□ 0.71
NPHP4-205ENST00000466897 AMIGO3Q86WK7 504 aa19.46■□□□□ 0.71
NPHP4-205ENST00000466897 PNPLA7Q6ZV29 1317 aa19.46■□□□□ 0.71
NPHP4-205ENST00000466897 MYL6BP14649 208 aa19.45■□□□□ 0.7
NPHP4-205ENST00000466897 PIP4K2AP48426 406 aaPredicted RBP19.45■□□□□ 0.7
NPHP4-205ENST00000466897 TRAPPC3LQ5T215 181 aa19.45■□□□□ 0.7
NPHP4-205ENST00000466897 NPM2Q86SE8 214 aaKnown RBP19.45■□□□□ 0.7
NPHP4-205ENST00000466897 MRPL50Q8N5N7 158 aaKnown RBP19.45■□□□□ 0.7
NPHP4-205ENST00000466897 ANXA1P04083 346 aa19.44■□□□□ 0.7
NPHP4-205ENST00000466897 SMC4Q9NTJ3 1288 aa19.44■□□□□ 0.7
NPHP4-205ENST00000466897 KIF16BQ96L93 1317 aa19.44■□□□□ 0.7
NPHP4-205ENST00000466897 ARHGEF1Q92888 912 aaKnown RBP19.43■□□□□ 0.7
NPHP4-205ENST00000466897 RCAN3Q9UKA8 241 aa19.43■□□□□ 0.7
NPHP4-205ENST00000466897 PTPRCP08575 1304 aa19.43■□□□□ 0.7
NPHP4-205ENST00000466897 USP42Q9H9J4 1324 aaKnown RBP19.43■□□□□ 0.7
NPHP4-205ENST00000466897 ERVV-1B6SEH8 477 aa19.42■□□□□ 0.7
NPHP4-205ENST00000466897 RFC4P35249 363 aa19.42■□□□□ 0.7
NPHP4-205ENST00000466897 FLIIQ13045 1269 aa19.42■□□□□ 0.7
NPHP4-205ENST00000466897 COPS6Q7L5N1 327 aa19.42■□□□□ 0.7
NPHP4-205ENST00000466897 DZIP3Q86Y13 1208 aaKnown RBP19.42■□□□□ 0.7
NPHP4-205ENST00000466897 XAGE3Q8WTP9 111 aa19.42■□□□□ 0.7
NPHP4-205ENST00000466897 PHAXQ9H814 394 aaKnown RBP19.42■□□□□ 0.7
NPHP4-205ENST00000466897 NARFQ9UHQ1 456 aa19.42■□□□□ 0.7
NPHP4-205ENST00000466897 TCERG1O14776 1098 aaKnown RBP19.41■□□□□ 0.7
NPHP4-205ENST00000466897 PHF14O94880 888 aa19.41■□□□□ 0.7
NPHP4-205ENST00000466897 DDX58O95786 925 aaKnown RBP19.41■□□□□ 0.7
NPHP4-205ENST00000466897 KIF6Q6ZMV9 814 aa19.41■□□□□ 0.7
NPHP4-205ENST00000466897 COL23A1Q86Y22 540 aaPredicted RBP19.41■□□□□ 0.7
NPHP4-205ENST00000466897 MAP3K15Q6ZN16 1313 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 388.8 ms