RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 HOXB7P09629 217 aa17.88■□□□□ 0.45
LIMD1-203ENST00000465039 ZNF853P0CG23 659 aa17.88■□□□□ 0.45
LIMD1-203ENST00000465039 EIF4A1P60842 406 aaKnown RBP17.88■□□□□ 0.45
LIMD1-203ENST00000465039 SOS1Q07889 1333 aaPredicted RBP17.88■□□□□ 0.45
LIMD1-203ENST00000465039 ERBB4Q15303 1308 aa17.88■□□□□ 0.45
LIMD1-203ENST00000465039 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.87■□□□□ 0.45
LIMD1-203ENST00000465039 KCNQ3O43525 872 aa17.87■□□□□ 0.45
LIMD1-203ENST00000465039 INTS5Q6P9B9 1019 aaKnown RBP17.87■□□□□ 0.45
LIMD1-203ENST00000465039 WDR63Q8IWG1 891 aa17.87■□□□□ 0.45
LIMD1-203ENST00000465039 MIER1Q8N108 512 aa17.87■□□□□ 0.45
LIMD1-203ENST00000465039 SPON1Q9HCB6 807 aa17.87■□□□□ 0.45
LIMD1-203ENST00000465039 GIGYF1O75420 1035 aaPredicted RBP17.86■□□□□ 0.45
LIMD1-203ENST00000465039 CHMP4AQ9BY43 222 aa17.86■□□□□ 0.45
LIMD1-203ENST00000465039 C4AP0C0L4 1744 aa17.86■□□□□ 0.45
LIMD1-203ENST00000465039 RGL2O15211 777 aa17.85■□□□□ 0.45
LIMD1-203ENST00000465039 IL6STP40189 918 aaPredicted RBP17.85■□□□□ 0.45
LIMD1-203ENST00000465039 TRAPPC3LQ5T215 181 aa17.85■□□□□ 0.45
LIMD1-203ENST00000465039 COL23A1Q86Y22 540 aaPredicted RBP17.85■□□□□ 0.45
LIMD1-203ENST00000465039 MIS18AQ9NYP9 233 aa17.84■□□□□ 0.45
LIMD1-203ENST00000465039 SRCAPQ6ZRS2 3230 aa17.84■□□□□ 0.45
LIMD1-203ENST00000465039 COL15A1P39059 1388 aa17.83■□□□□ 0.45
LIMD1-203ENST00000465039 A0A087WZG4 1122 aa17.83■□□□□ 0.44
LIMD1-203ENST00000465039 ZNF521Q96K83 1311 aa17.82■□□□□ 0.44
LIMD1-203ENST00000465039 EIF5P55010 431 aaKnown RBP17.82■□□□□ 0.44
LIMD1-203ENST00000465039 MBIPQ9NS73 344 aa17.82■□□□□ 0.44
LIMD1-203ENST00000465039 ZBTB1Q9Y2K1 713 aa17.82■□□□□ 0.44
LIMD1-203ENST00000465039 RFC4P35249 363 aa17.81■□□□□ 0.44
LIMD1-203ENST00000465039 AMIGO3Q86WK7 504 aa17.81■□□□□ 0.44
LIMD1-203ENST00000465039 SGIP1Q9BQI5 828 aa17.81■□□□□ 0.44
LIMD1-203ENST00000465039 PDGFDQ9GZP0 370 aaPredicted RBP17.81■□□□□ 0.44
LIMD1-203ENST00000465039 SCN7AQ01118 1682 aa17.8■□□□□ 0.44
LIMD1-203ENST00000465039 USP42Q9H9J4 1324 aaKnown RBP17.8■□□□□ 0.44
LIMD1-203ENST00000465039 PHF14O94880 888 aa17.8■□□□□ 0.44
LIMD1-203ENST00000465039 NLGN1Q8N2Q7 840 aa17.8■□□□□ 0.44
LIMD1-203ENST00000465039 ARHGEF1Q92888 912 aaKnown RBP17.8■□□□□ 0.44
LIMD1-203ENST00000465039 USP16Q9Y5T5 823 aa17.8■□□□□ 0.44
LIMD1-203ENST00000465039 ZBTB7AO95365 584 aa17.79■□□□□ 0.44
LIMD1-203ENST00000465039 POLD1P28340 1107 aa17.79■□□□□ 0.44
LIMD1-203ENST00000465039 PTGER2P43116 358 aa17.79■□□□□ 0.44
LIMD1-203ENST00000465039 NPM2Q86SE8 214 aaKnown RBP17.79■□□□□ 0.44
LIMD1-203ENST00000465039 MSH5O43196 834 aa17.78■□□□□ 0.44
LIMD1-203ENST00000465039 MYH16Q9H6N6 1097 aa17.78■□□□□ 0.44
LIMD1-203ENST00000465039 NARFQ9UHQ1 456 aa17.78■□□□□ 0.44
LIMD1-203ENST00000465039 LAS1LQ9Y4W2 734 aaKnown RBP17.78■□□□□ 0.44
LIMD1-203ENST00000465039 CANXP27824 592 aaKnown RBP17.77■□□□□ 0.44
LIMD1-203ENST00000465039 BCORQ6W2J9 1755 aa17.76■□□□□ 0.43
LIMD1-203ENST00000465039 PRAMEF22A3QJZ6 481 aa17.76■□□□□ 0.43
LIMD1-203ENST00000465039 ZPR1O75312 459 aa17.76■□□□□ 0.43
LIMD1-203ENST00000465039 A1BGP04217 495 aa17.76■□□□□ 0.43
LIMD1-203ENST00000465039 NBPF26B4DH59 902 aa17.75■□□□□ 0.43
LIMD1-203ENST00000465039 GYS1P13807 737 aa17.75■□□□□ 0.43
LIMD1-203ENST00000465039 NBPF10Q6P3W6 841 aaKnown RBP17.75■□□□□ 0.43
LIMD1-203ENST00000465039 NBPF15Q8N660 670 aa17.75■□□□□ 0.43
LIMD1-203ENST00000465039 FANCIQ9NVI1 1328 aa17.74■□□□□ 0.43
LIMD1-203ENST00000465039 DUSP27Q5VZP5 1158 aa17.74■□□□□ 0.43
LIMD1-203ENST00000465039 E9PSI1 815 aa17.73■□□□□ 0.43
LIMD1-203ENST00000465039 GOLGA2Q08379 1002 aa17.73■□□□□ 0.43
LIMD1-203ENST00000465039 CLEC4GQ6UXB4 293 aa17.73■□□□□ 0.43
LIMD1-203ENST00000465039 DDX21Q9NR30 783 aaKnown RBP eCLIP17.73■□□□□ 0.43
LIMD1-203ENST00000465039 DBF4Q9UBU7 674 aaPredicted RBP17.73■□□□□ 0.43
LIMD1-203ENST00000465039 ATF5Q9Y2D1 282 aaPredicted RBP17.73■□□□□ 0.43
LIMD1-203ENST00000465039 HDGFL1Q5TGJ6 251 aa17.72■□□□□ 0.43
LIMD1-203ENST00000465039 ARXQ96QS3 562 aa17.72■□□□□ 0.43
LIMD1-203ENST00000465039 ZNF652Q9Y2D9 606 aa17.72■□□□□ 0.43
LIMD1-203ENST00000465039 ERVV-1B6SEH8 477 aa17.71■□□□□ 0.43
LIMD1-203ENST00000465039 PDIA6Q15084 440 aa17.71■□□□□ 0.43
LIMD1-203ENST00000465039 LRP10Q7Z4F1 713 aa17.71■□□□□ 0.43
LIMD1-203ENST00000465039 DZIP3Q86Y13 1208 aaKnown RBP17.71■□□□□ 0.43
LIMD1-203ENST00000465039 PPP1R1BQ9UD71 204 aaPredicted RBP17.71■□□□□ 0.43
LIMD1-203ENST00000465039 CACNA1FO60840 1977 aa17.7■□□□□ 0.42
LIMD1-203ENST00000465039 CAMTA2O94983 1202 aa17.7■□□□□ 0.42
LIMD1-203ENST00000465039 KRT24Q2M2I5 525 aa17.7■□□□□ 0.42
LIMD1-203ENST00000465039 TSR2Q969E8 191 aaKnown RBP17.7■□□□□ 0.42
LIMD1-203ENST00000465039 HYPKQ9NX55 129 aa17.7■□□□□ 0.42
LIMD1-203ENST00000465039 CCDC30Q5VVM6 783 aa17.69■□□□□ 0.42
LIMD1-203ENST00000465039 USPL1Q5W0Q7 1092 aa17.69■□□□□ 0.42
LIMD1-203ENST00000465039 SMIM5Q71RC9 77 aa17.69■□□□□ 0.42
LIMD1-203ENST00000465039 C8orf58Q8NAV2 365 aa17.69■□□□□ 0.42
LIMD1-203ENST00000465039 SRP68Q9UHB9 627 aaKnown RBP17.69■□□□□ 0.42
LIMD1-203ENST00000465039 SALL2Q9Y467 1007 aaPredicted RBP17.69■□□□□ 0.42
LIMD1-203ENST00000465039 ATP10DQ9P241 1426 aa17.69■□□□□ 0.42
LIMD1-203ENST00000465039 NRXN2Q9P2S2 1712 aa17.69■□□□□ 0.42
LIMD1-203ENST00000465039 KIF13BQ9NQT8 1826 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 MMP10P09238 476 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 EIF2S2P20042 333 aaKnown RBP17.68■□□□□ 0.42
LIMD1-203ENST00000465039 TM4SF1P30408 202 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 FKBP8Q14318 412 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 TWISTNBQ3B726 338 aaPredicted RBP17.68■□□□□ 0.42
LIMD1-203ENST00000465039 MSL1Q68DK7 614 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 KIF6Q6ZMV9 814 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 ZNF428Q96B54 188 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 BCL2L12Q9HB09 334 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 ZNF330Q9Y3S2 320 aaPredicted RBP17.68■□□□□ 0.42
LIMD1-203ENST00000465039 CD2APQ9Y5K6 639 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 MAP3K15Q6ZN16 1313 aa17.68■□□□□ 0.42
LIMD1-203ENST00000465039 CARMIL3Q8ND23 1372 aa17.67■□□□□ 0.42
LIMD1-203ENST00000465039 TBC1D2BQ9UPU7 963 aa17.67■□□□□ 0.42
LIMD1-203ENST00000465039 C10orf71Q711Q0 1435 aa17.66■□□□□ 0.42
LIMD1-203ENST00000465039 CT47B1P0C2W7 299 aaPredicted RBP17.66■□□□□ 0.42
LIMD1-203ENST00000465039 SLFN5Q08AF3 891 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms