RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 QRICH2Q9H0J4 1663 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 LOC102724428A0A0B4J2F2 783 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 H0YIN7 160 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 C21orf2O43822 256 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 SIK1P57059 783 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 RGL3Q3MIN7 710 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 SOGA3Q5TF21 947 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 MPRIPQ6WCQ1 1025 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 USP50Q70EL3 339 aaPredicted RBP3.98□□□□□ -1.77
USP40-211ENST00000464956 C2CD5Q86YS7 1000 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 ZCRB1Q8TBF4 217 aaKnown RBP3.98□□□□□ -1.77
USP40-211ENST00000464956 ARHGEF1Q92888 912 aaKnown RBP3.98□□□□□ -1.77
USP40-211ENST00000464956 C14orf93Q9H972 538 aaKnown RBP3.98□□□□□ -1.77
USP40-211ENST00000464956 ITSN1Q15811 1721 aa3.98□□□□□ -1.77
USP40-211ENST00000464956 ZNF541Q9H0D2 1346 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 RGPD8O14715 1765 aaPredicted RBP3.97□□□□□ -1.77
USP40-211ENST00000464956 A0A0C4DFX4 3053 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 FAM155AB1AL88 458 aaPredicted RBP3.97□□□□□ -1.77
USP40-211ENST00000464956 GPR25O00155 361 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 FKTNO75072 461 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 ATP6V1AP38606 617 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 MRE11P49959 708 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 ZNF157P51786 506 aaPredicted RBP3.97□□□□□ -1.77
USP40-211ENST00000464956 SRPK2P78362 688 aaKnown RBP3.97□□□□□ -1.77
USP40-211ENST00000464956 DDR1Q08345 913 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 SLC4A8Q2Y0W8 1093 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 NOM1Q5C9Z4 860 aaKnown RBP3.97□□□□□ -1.77
USP40-211ENST00000464956 TJAP1Q5JTD0 557 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 GPC2Q8N158 579 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 ANKRD24Q8TF21 1146 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 CSRNP1Q96S65 589 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 HTATIP2Q9BUP3 242 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 CDK19Q9BWU1 502 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 TRAK1Q9UPV9 953 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 C4BP0C0L5 1744 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 CACNA1AO00555 2505 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 KIF13BQ9NQT8 1826 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 ARFGEF1Q9Y6D6 1849 aa3.97□□□□□ -1.77
USP40-211ENST00000464956 SMG6Q86US8 1419 aaKnown RBP3.96□□□□□ -1.77
USP40-211ENST00000464956 LY75O60449 1722 aa3.96□□□□□ -1.78
USP40-211ENST00000464956 WNK3Q9BYP7 1800 aa3.96□□□□□ -1.78
USP40-211ENST00000464956 POLRMTO00411 1230 aaKnown RBP3.96□□□□□ -1.78
USP40-211ENST00000464956 TBC1D8O95759 1140 aa3.96□□□□□ -1.78
USP40-211ENST00000464956 FAM50AQ14320 339 aaKnown RBP3.96□□□□□ -1.78
USP40-211ENST00000464956 CFAP70Q5T0N1 1121 aa3.96□□□□□ -1.78
USP40-211ENST00000464956 KANK4Q5T7N3 995 aaPredicted RBP3.96□□□□□ -1.78
USP40-211ENST00000464956 MAFAQ8NHW3 353 aaPredicted RBP3.96□□□□□ -1.78
USP40-211ENST00000464956 CNKSR2Q8WXI2 1034 aa3.96□□□□□ -1.78
USP40-211ENST00000464956 ZNF622Q969S3 477 aaKnown RBP eCLIP3.96□□□□□ -1.78
USP40-211ENST00000464956 ARMC5Q96C12 935 aa3.96□□□□□ -1.78
USP40-211ENST00000464956 TRIM17Q9Y577 477 aa3.96□□□□□ -1.78
USP40-211ENST00000464956 KIF7Q2M1P5 1343 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 C4AP0C0L4 1744 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 TIAM2Q8IVF5 1701 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 C5P01031 1676 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 USP31Q70CQ4 1352 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 SLC10A3P09131 477 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 ITPK1Q13572 414 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 FKBP8Q14318 412 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 LRIT3Q3SXY7 679 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 NBPF11Q86T75 865 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 C2orf69Q8N8R5 385 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 GLIS2Q9BZE0 524 aaPredicted RBP3.95□□□□□ -1.78
USP40-211ENST00000464956 PDZRN3Q9UPQ7 1066 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 IRS2Q9Y4H2 1338 aa3.95□□□□□ -1.78
USP40-211ENST00000464956 FZD9O00144 591 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 ZBTB7BO15156 539 aaPredicted RBP3.94□□□□□ -1.78
USP40-211ENST00000464956 RPS6KA4O75676 772 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 EPS15P42566 896 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 EIF6P56537 245 aaKnown RBP3.94□□□□□ -1.78
USP40-211ENST00000464956 RC3H1Q5TC82 1133 aaKnown RBP3.94□□□□□ -1.78
USP40-211ENST00000464956 CDC37L1Q7L3B6 337 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 OTOP1Q7RTM1 612 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 SAMD7Q7Z3H4 446 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 JDP2Q8WYK2 163 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 CNKSR1Q969H4 720 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 GBA2Q9HCG7 927 aaPredicted RBP3.94□□□□□ -1.78
USP40-211ENST00000464956 STAP2Q9UGK3 403 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 GJA3Q9Y6H8 435 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 ADAMTSL1Q8N6G6 1762 aa3.94□□□□□ -1.78
USP40-211ENST00000464956 ROCK1Q13464 1354 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 SBF1O95248 1867 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 TM4SF1P30408 202 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 BMP8BP34820 402 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 SCNN1DP51172 638 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 MAP3K11Q16584 847 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 CCDC93Q567U6 631 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 FAM109BQ6ICB4 259 aaPredicted RBP3.93□□□□□ -1.78
USP40-211ENST00000464956 PIGBQ92521 554 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 GUCD1Q96NT3 240 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 ADARB2Q9NS39 739 aaKnown RBP3.93□□□□□ -1.78
USP40-211ENST00000464956 SRP68Q9UHB9 627 aaKnown RBP3.93□□□□□ -1.78
USP40-211ENST00000464956 PTPN22Q9Y2R2 807 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 CGNL1Q0VF96 1302 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 PCDH11XQ9BZA7 1347 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 PCDH11YQ9BZA8 1340 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 CNTNAP4Q9C0A0 1308 aa3.93□□□□□ -1.78
USP40-211ENST00000464956 USP42Q9H9J4 1324 aaKnown RBP3.93□□□□□ -1.78
USP40-211ENST00000464956 TOGARAM1Q9Y4F4 1720 aa3.92□□□□□ -1.78
USP40-211ENST00000464956 BRCA1P38398 1863 aaKnown RBP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms