RNA–Protein interactions for RNA: ENST00000464605.1

UBA3-206, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 431 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-206	ENST00000464605	TAF7	Q15545	349 aa	Predicted RBP	29.32	■■■□□ 2.28
UBA3-206	ENST00000464605	CD2AP	Q9Y5K6	639 aa		29.32	■■■□□ 2.28
UBA3-206	ENST00000464605	PELP1	Q8IZL8	1130 aa	Known RBP	29.31	■■■□□ 2.28
UBA3-206	ENST00000464605	SRP68	Q9UHB9	627 aa	Known RBP	29.31	■■■□□ 2.28
UBA3-206	ENST00000464605	ADAMTS8	Q9UP79	889 aa		29.31	■■■□□ 2.28
UBA3-206	ENST00000464605	USP42	Q9H9J4	1324 aa	Known RBP	29.3	■■■□□ 2.28
UBA3-206	ENST00000464605	NLGN1	Q8N2Q7	840 aa		29.3	■■■□□ 2.28
UBA3-206	ENST00000464605	THUMPD2	Q9BTF0	503 aa	Known RBP	29.3	■■■□□ 2.28
UBA3-206	ENST00000464605	STARD3NL	O95772	234 aa		29.29	■■■□□ 2.28
UBA3-206	ENST00000464605	YBX3	P16989	372 aa	Known RBP eCLIP	29.29	■■■□□ 2.28
UBA3-206	ENST00000464605	CCDC146	Q8IYE0	955 aa		29.29	■■■□□ 2.28
UBA3-206	ENST00000464605	TEX13A	Q9BXU3	409 aa	Predicted RBP	29.29	■■■□□ 2.28
UBA3-206	ENST00000464605	MIS18A	Q9NYP9	233 aa		29.29	■■■□□ 2.28
UBA3-206	ENST00000464605	KIF13B	Q9NQT8	1826 aa		29.29	■■■□□ 2.28
UBA3-206	ENST00000464605	MMP10	P09238	476 aa		29.28	■■■□□ 2.28
UBA3-206	ENST00000464605	TMPO	P42166	694 aa	Known RBP	29.28	■■■□□ 2.28
UBA3-206	ENST00000464605	PRAMEF22	A3QJZ6	481 aa		29.27	■■■□□ 2.28
UBA3-206	ENST00000464605	RIPK4	P57078	832 aa		29.27	■■■□□ 2.28
UBA3-206	ENST00000464605	WDR43	Q15061	677 aa	Known RBP eCLIP	29.27	■■■□□ 2.28
UBA3-206	ENST00000464605	EIF5	P55010	431 aa	Known RBP	29.26	■■■□□ 2.27
UBA3-206	ENST00000464605	USP16	Q9Y5T5	823 aa		29.26	■■■□□ 2.27
UBA3-206	ENST00000464605	COL15A1	P39059	1388 aa		29.26	■■■□□ 2.27
UBA3-206	ENST00000464605	CANX	P27824	592 aa	Known RBP	29.25	■■■□□ 2.27
UBA3-206	ENST00000464605	FKBP8	Q14318	412 aa		29.25	■■■□□ 2.27
UBA3-206	ENST00000464605	CCDC184	Q52MB2	194 aa		29.25	■■■□□ 2.27
UBA3-206	ENST00000464605	RUNDC1	Q96C34	613 aa		29.24	■■■□□ 2.27
UBA3-206	ENST00000464605	CHD4	Q14839	1912 aa		29.24	■■■□□ 2.27
UBA3-206	ENST00000464605	GRIN3B	O60391	1043 aa		29.23	■■■□□ 2.27
UBA3-206	ENST00000464605	A1BG	P04217	495 aa		29.23	■■■□□ 2.27
UBA3-206	ENST00000464605	NARF	Q9UHQ1	456 aa		29.23	■■■□□ 2.27
UBA3-206	ENST00000464605	KIAA1551	Q9HCM1	1747 aa		29.23	■■■□□ 2.27
UBA3-206	ENST00000464605	SNRPA1	P09661	255 aa	Known RBP	29.22	■■■□□ 2.27
UBA3-206	ENST00000464605	USPL1	Q5W0Q7	1092 aa		29.22	■■■□□ 2.27
UBA3-206	ENST00000464605	RRP7A	Q9Y3A4	280 aa	Known RBP	29.22	■■■□□ 2.27
UBA3-206	ENST00000464605	PNISR	Q8TF01	805 aa	Known RBP	29.21	■■■□□ 2.27
UBA3-206	ENST00000464605	BCL2L12	Q9HB09	334 aa		29.21	■■■□□ 2.27
UBA3-206	ENST00000464605	LAMB4	A4D0S4	1761 aa		29.21	■■■□□ 2.27
UBA3-206	ENST00000464605	AFDN	P55196	1824 aa	Known RBP	29.2	■■■□□ 2.26
UBA3-206	ENST00000464605	ZPR1	O75312	459 aa		29.19	■■■□□ 2.26
UBA3-206	ENST00000464605	TM4SF1	P30408	202 aa		29.19	■■■□□ 2.26
UBA3-206	ENST00000464605	IL6ST	P40189	918 aa	Predicted RBP	29.19	■■■□□ 2.26
UBA3-206	ENST00000464605	DDR1	Q08345	913 aa		29.19	■■■□□ 2.26
UBA3-206	ENST00000464605	EIF4A1	P60842	406 aa	Known RBP	29.18	■■■□□ 2.26
UBA3-206	ENST00000464605	TRIM35	Q9UPQ4	493 aa		29.18	■■■□□ 2.26
UBA3-206	ENST00000464605	N4BP2	Q86UW6	1770 aa	Predicted RBP	29.17	■■■□□ 2.26
UBA3-206	ENST00000464605	SCN7A	Q01118	1682 aa		29.16	■■■□□ 2.26
UBA3-206	ENST00000464605	NEUROD2	Q15784	382 aa		29.16	■■■□□ 2.26
UBA3-206	ENST00000464605	PARP3	Q9Y6F1	533 aa		29.16	■■■□□ 2.26
UBA3-206	ENST00000464605	C10orf71	Q711Q0	1435 aa		29.16	■■■□□ 2.26
UBA3-206	ENST00000464605	LMOD3	Q0VAK6	560 aa		29.15	■■■□□ 2.26
UBA3-206	ENST00000464605	NRXN2	Q9P2S2	1712 aa		29.14	■■■□□ 2.26
UBA3-206	ENST00000464605	POLRMT	O00411	1230 aa	Known RBP	29.14	■■■□□ 2.26
UBA3-206	ENST00000464605	GIGYF1	O75420	1035 aa	Predicted RBP	29.14	■■■□□ 2.26
UBA3-206	ENST00000464605	PIP4K2A	P48426	406 aa	Predicted RBP	29.14	■■■□□ 2.26
UBA3-206	ENST00000464605	BCOR	Q6W2J9	1755 aa		29.13	■■■□□ 2.25
UBA3-206	ENST00000464605		A0A087WZG4	1122 aa		29.13	■■■□□ 2.25
UBA3-206	ENST00000464605	NBPF26	B4DH59	902 aa		29.13	■■■□□ 2.25
UBA3-206	ENST00000464605	NBPF10	Q6P3W6	841 aa	Known RBP	29.13	■■■□□ 2.25
UBA3-206	ENST00000464605	NBPF15	Q8N660	670 aa		29.13	■■■□□ 2.25
UBA3-206	ENST00000464605	NFIX	Q14938	502 aa		29.12	■■■□□ 2.25
UBA3-206	ENST00000464605	TBC1D2B	Q9UPU7	963 aa		29.12	■■■□□ 2.25
UBA3-206	ENST00000464605	BRCA1	P38398	1863 aa	Known RBP	29.12	■■■□□ 2.25
UBA3-206	ENST00000464605	ANP32C	O43423	234 aa		29.11	■■■□□ 2.25
UBA3-206	ENST00000464605	BABAM1	Q9NWV8	329 aa		29.11	■■■□□ 2.25
UBA3-206	ENST00000464605	PXDNL	A1KZ92	1463 aa		29.1	■■■□□ 2.25
UBA3-206	ENST00000464605	TSPYL4	Q9UJ04	414 aa		29.1	■■■□□ 2.25
UBA3-206	ENST00000464605	ZNF330	Q9Y3S2	320 aa	Predicted RBP	29.1	■■■□□ 2.25
UBA3-206	ENST00000464605	APAF1	O14727	1248 aa		29.09	■■■□□ 2.25
UBA3-206	ENST00000464605	CAMTA2	O94983	1202 aa		29.08	■■■□□ 2.25
UBA3-206	ENST00000464605	TGFB2	P61812	414 aa		29.07	■■■□□ 2.24
UBA3-206	ENST00000464605	CHL1	O00533	1208 aa		29.06	■■■□□ 2.24
UBA3-206	ENST00000464605	TBC1D9B	Q66K14	1250 aa		29.05	■■■□□ 2.24
UBA3-206	ENST00000464605	DZIP3	Q86Y13	1208 aa	Known RBP	29.05	■■■□□ 2.24
UBA3-206	ENST00000464605	WWC3	Q9ULE0	1092 aa		29.05	■■■□□ 2.24
UBA3-206	ENST00000464605		A0A0G2JLW4	131 aa		29.04	■■■□□ 2.24
UBA3-206	ENST00000464605	KCNA3	P22001	575 aa		29.03	■■■□□ 2.24
UBA3-206	ENST00000464605	C1QTNF8	P60827	252 aa		29.03	■■■□□ 2.24
UBA3-206	ENST00000464605	SERPINB2	P05120	415 aa		29.02	■■■□□ 2.24
UBA3-206	ENST00000464605	DPEP1	P16444	411 aa		29.02	■■■□□ 2.24
UBA3-206	ENST00000464605	MRS2	Q9HD23	443 aa		29.02	■■■□□ 2.24
UBA3-206	ENST00000464605	NUP98	P52948	1817 aa		29.01	■■■□□ 2.24
UBA3-206	ENST00000464605	BICDL1	Q6ZP65	573 aa		29.01	■■■□□ 2.23
UBA3-206	ENST00000464605	NPM2	Q86SE8	214 aa	Known RBP	29.01	■■■□□ 2.23
UBA3-206	ENST00000464605	ANKRD31	Q8N7Z5	1873 aa		29.01	■■■□□ 2.23
UBA3-206	ENST00000464605	ADCY9	O60503	1353 aa		29	■■■□□ 2.23
UBA3-206	ENST00000464605	ATP10D	Q9P241	1426 aa		28.99	■■■□□ 2.23
UBA3-206	ENST00000464605	ZNF853	P0CG23	659 aa		28.98	■■■□□ 2.23
UBA3-206	ENST00000464605	KRT24	Q2M2I5	525 aa		28.98	■■■□□ 2.23
UBA3-206	ENST00000464605	CFAP44	Q96MT7	982 aa		28.98	■■■□□ 2.23
UBA3-206	ENST00000464605	ARFGEF1	Q9Y6D6	1849 aa		28.98	■■■□□ 2.23
UBA3-206	ENST00000464605	CLEC4G	Q6UXB4	293 aa		28.97	■■■□□ 2.23
UBA3-206	ENST00000464605	LAS1L	Q9Y4W2	734 aa	Known RBP	28.97	■■■□□ 2.23
UBA3-206	ENST00000464605	DLEC1	Q9Y238	1755 aa		28.96	■■■□□ 2.23
UBA3-206	ENST00000464605	PDIA6	Q15084	440 aa		28.96	■■■□□ 2.23
UBA3-206	ENST00000464605	LRP10	Q7Z4F1	713 aa		28.96	■■■□□ 2.23
UBA3-206	ENST00000464605	CARMIL3	Q8ND23	1372 aa		28.96	■■■□□ 2.23
UBA3-206	ENST00000464605	ERBB4	Q15303	1308 aa		28.95	■■■□□ 2.23
UBA3-206	ENST00000464605	RGL2	O15211	777 aa		28.95	■■■□□ 2.22
UBA3-206	ENST00000464605	CHRNA5	P30532	468 aa		28.94	■■■□□ 2.22
UBA3-206	ENST00000464605	HLF	Q16534	295 aa		28.94	■■■□□ 2.22

Retrieved 100 of 20,778 RNA–protein pairs in 185.8 ms