RNA–Protein interactions for RNA: ENST00000463908.2

LMNB1-204, Transcript of lamin B1, humanhuman

TSL 4

Gene LMNB1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-204ENST00000463908 COL5A3P25940 1745 aaPredicted RBP24.69■■□□□ 1.54
LMNB1-204ENST00000463908 KRT24Q2M2I5 525 aa24.69■■□□□ 1.54
LMNB1-204ENST00000463908 COL23A1Q86Y22 540 aaPredicted RBP24.69■■□□□ 1.54
LMNB1-204ENST00000463908 SPINK5Q9NQ38 1064 aaPredicted RBP24.69■■□□□ 1.54
LMNB1-204ENST00000463908 IL16Q14005 1332 aa24.68■■□□□ 1.54
LMNB1-204ENST00000463908 GNPATO15228 680 aa24.68■■□□□ 1.54
LMNB1-204ENST00000463908 RPS6KA4O75676 772 aa24.68■■□□□ 1.54
LMNB1-204ENST00000463908 STARD3NLO95772 234 aa24.68■■□□□ 1.54
LMNB1-204ENST00000463908 CCDC87Q9NVE4 849 aa24.68■■□□□ 1.54
LMNB1-204ENST00000463908 A1BGP04217 495 aa24.67■■□□□ 1.54
LMNB1-204ENST00000463908 MYH14Q7Z406 1995 aaKnown RBP24.66■■□□□ 1.54
LMNB1-204ENST00000463908 ZBTB1Q9Y2K1 713 aa24.66■■□□□ 1.54
LMNB1-204ENST00000463908 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.65■■□□□ 1.54
LMNB1-204ENST00000463908 TSR2Q969E8 191 aaKnown RBP24.65■■□□□ 1.54
LMNB1-204ENST00000463908 RTCBQ9Y3I0 505 aaKnown RBP24.65■■□□□ 1.54
LMNB1-204ENST00000463908 PHF14O94880 888 aa24.64■■□□□ 1.54
LMNB1-204ENST00000463908 SSFA2P28290 1259 aa24.64■■□□□ 1.54
LMNB1-204ENST00000463908 CANXP27824 592 aaKnown RBP24.63■■□□□ 1.53
LMNB1-204ENST00000463908 TRAPPC3LQ5T215 181 aa24.63■■□□□ 1.53
LMNB1-204ENST00000463908 ARHGEF1Q92888 912 aaKnown RBP24.63■■□□□ 1.53
LMNB1-204ENST00000463908 C8orf58Q8NAV2 365 aa24.62■■□□□ 1.53
LMNB1-204ENST00000463908 FLAD1Q8NFF5 587 aa24.62■■□□□ 1.53
LMNB1-204ENST00000463908 TUBGCP6Q96RT7 1819 aa24.62■■□□□ 1.53
LMNB1-204ENST00000463908 UBR3Q6ZT12 1888 aa24.62■■□□□ 1.53
LMNB1-204ENST00000463908 SOS1Q07889 1333 aaPredicted RBP24.61■■□□□ 1.53
LMNB1-204ENST00000463908 NBPF26B4DH59 902 aa24.61■■□□□ 1.53
LMNB1-204ENST00000463908 PIP4K2AP48426 406 aaPredicted RBP24.61■■□□□ 1.53
LMNB1-204ENST00000463908 NBPF10Q6P3W6 841 aaKnown RBP24.61■■□□□ 1.53
LMNB1-204ENST00000463908 NBPF15Q8N660 670 aa24.61■■□□□ 1.53
LMNB1-204ENST00000463908 EIF5P55010 431 aaKnown RBP24.6■■□□□ 1.53
LMNB1-204ENST00000463908 DUSP27Q5VZP5 1158 aa24.6■■□□□ 1.53
LMNB1-204ENST00000463908 QSER1Q2KHR3 1735 aa24.6■■□□□ 1.53
LMNB1-204ENST00000463908 CASZ1Q86V15 1759 aa24.59■■□□□ 1.53
LMNB1-204ENST00000463908 MSH5O43196 834 aa24.59■■□□□ 1.53
LMNB1-204ENST00000463908 ZBTB7AO95365 584 aa24.59■■□□□ 1.53
LMNB1-204ENST00000463908 FANCIQ9NVI1 1328 aa24.59■■□□□ 1.53
LMNB1-204ENST00000463908 ELL2O00472 640 aaPredicted RBP24.58■■□□□ 1.53
LMNB1-204ENST00000463908 ADRA2BP18089 450 aa24.58■■□□□ 1.53
LMNB1-204ENST00000463908 EIF2S2P20042 333 aaKnown RBP24.58■■□□□ 1.53
LMNB1-204ENST00000463908 TSPYL6Q8N831 410 aa24.58■■□□□ 1.53
LMNB1-204ENST00000463908 IL6STP40189 918 aaPredicted RBP24.57■■□□□ 1.52
LMNB1-204ENST00000463908 GOLGA2Q08379 1002 aa24.57■■□□□ 1.52
LMNB1-204ENST00000463908 SLC16A10Q8TF71 515 aa24.57■■□□□ 1.52
LMNB1-204ENST00000463908 CDCA7LQ96GN5 454 aa24.57■■□□□ 1.52
LMNB1-204ENST00000463908 HNRNPUQ00839 825 aaKnown RBP eCLIP24.56■■□□□ 1.52
LMNB1-204ENST00000463908 PDIA6Q15084 440 aa24.56■■□□□ 1.52
LMNB1-204ENST00000463908 ATF5Q9Y2D1 282 aaPredicted RBP24.56■■□□□ 1.52
LMNB1-204ENST00000463908 HOXB7P09629 217 aa24.55■■□□□ 1.52
LMNB1-204ENST00000463908 SLFN5Q08AF3 891 aa24.55■■□□□ 1.52
LMNB1-204ENST00000463908 NECTIN2Q92692 538 aa24.55■■□□□ 1.52
LMNB1-204ENST00000463908 RFC4P35249 363 aa24.54■■□□□ 1.52
LMNB1-204ENST00000463908 MTFR1LQ9H019 292 aa24.54■■□□□ 1.52
LMNB1-204ENST00000463908 EXOSC9Q06265 439 aaKnown RBP24.53■■□□□ 1.52
LMNB1-204ENST00000463908 MYH16Q9H6N6 1097 aa24.53■■□□□ 1.52
LMNB1-204ENST00000463908 SRP68Q9UHB9 627 aaKnown RBP24.53■■□□□ 1.52
LMNB1-204ENST00000463908 COL15A1P39059 1388 aa24.53■■□□□ 1.52
LMNB1-204ENST00000463908 PROSER3Q2NL68 480 aa24.52■■□□□ 1.52
LMNB1-204ENST00000463908 LRP10Q7Z4F1 713 aa24.52■■□□□ 1.52
LMNB1-204ENST00000463908 TRMT2AQ8IZ69 625 aaKnown RBP24.52■■□□□ 1.52
LMNB1-204ENST00000463908 E9PSI1 815 aa24.51■■□□□ 1.51
LMNB1-204ENST00000463908 ANXA1P04083 346 aa24.51■■□□□ 1.51
LMNB1-204ENST00000463908 PTGER2P43116 358 aa24.51■■□□□ 1.51
LMNB1-204ENST00000463908 HDGFL1Q5TGJ6 251 aa24.51■■□□□ 1.51
LMNB1-204ENST00000463908 SGIP1Q9BQI5 828 aa24.51■■□□□ 1.51
LMNB1-204ENST00000463908 NARFQ9UHQ1 456 aa24.51■■□□□ 1.51
LMNB1-204ENST00000463908 TBC1D2BQ9UPU7 963 aa24.51■■□□□ 1.51
LMNB1-204ENST00000463908 ZNF330Q9Y3S2 320 aaPredicted RBP24.51■■□□□ 1.51
LMNB1-204ENST00000463908 LAMB4A4D0S4 1761 aa24.51■■□□□ 1.51
LMNB1-204ENST00000463908 GYS1P13807 737 aa24.5■■□□□ 1.51
LMNB1-204ENST00000463908 MYL6BP14649 208 aa24.5■■□□□ 1.51
LMNB1-204ENST00000463908 MSL1Q68DK7 614 aa24.5■■□□□ 1.51
LMNB1-204ENST00000463908 BCL2L12Q9HB09 334 aa24.5■■□□□ 1.51
LMNB1-204ENST00000463908 SPON1Q9HCB6 807 aa24.5■■□□□ 1.51
LMNB1-204ENST00000463908 ERBB4Q15303 1308 aa24.5■■□□□ 1.51
LMNB1-204ENST00000463908 USP42Q9H9J4 1324 aaKnown RBP24.5■■□□□ 1.51
LMNB1-204ENST00000463908 A0A087WZG4 1122 aa24.49■■□□□ 1.51
LMNB1-204ENST00000463908 VAMP4O75379 141 aa24.49■■□□□ 1.51
LMNB1-204ENST00000463908 TWISTNBQ3B726 338 aaPredicted RBP24.49■■□□□ 1.51
LMNB1-204ENST00000463908 USPL1Q5W0Q7 1092 aa24.49■■□□□ 1.51
LMNB1-204ENST00000463908 YY1P25490 414 aa24.48■■□□□ 1.51
LMNB1-204ENST00000463908 DDX21Q9NR30 783 aaKnown RBP eCLIP24.48■■□□□ 1.51
LMNB1-204ENST00000463908 CHPF2Q9P2E5 772 aa24.48■■□□□ 1.51
LMNB1-204ENST00000463908 ZPR1O75312 459 aa24.47■■□□□ 1.51
LMNB1-204ENST00000463908 FKBP8Q14318 412 aa24.47■■□□□ 1.51
LMNB1-204ENST00000463908 TTLL7Q6ZT98 887 aa24.46■■□□□ 1.51
LMNB1-204ENST00000463908 DZIP3Q86Y13 1208 aaKnown RBP24.46■■□□□ 1.51
LMNB1-204ENST00000463908 ARXQ96QS3 562 aa24.46■■□□□ 1.51
LMNB1-204ENST00000463908 C4AP0C0L4 1744 aa24.46■■□□□ 1.51
LMNB1-204ENST00000463908 CAMTA2O94983 1202 aa24.45■■□□□ 1.5
LMNB1-204ENST00000463908 NLGN1Q8N2Q7 840 aa24.45■■□□□ 1.5
LMNB1-204ENST00000463908 DBF4Q9UBU7 674 aaPredicted RBP24.45■■□□□ 1.5
LMNB1-204ENST00000463908 PPP1R1BQ9UD71 204 aaPredicted RBP24.45■■□□□ 1.5
LMNB1-204ENST00000463908 TCERG1O14776 1098 aaKnown RBP24.44■■□□□ 1.5
LMNB1-204ENST00000463908 NPM2Q86SE8 214 aaKnown RBP24.44■■□□□ 1.5
LMNB1-204ENST00000463908 CCDC30Q5VVM6 783 aa24.43■■□□□ 1.5
LMNB1-204ENST00000463908 ZBED9Q6R2W3 1325 aa24.42■■□□□ 1.5
LMNB1-204ENST00000463908 COL24A1Q17RW2 1714 aa24.42■■□□□ 1.5
LMNB1-204ENST00000463908 TM4SF1P30408 202 aa24.42■■□□□ 1.5
LMNB1-204ENST00000463908 COPS6Q7L5N1 327 aa24.42■■□□□ 1.5
LMNB1-204ENST00000463908 UTRNP46939 3433 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms