RNA–Protein interactions for RNA: ENST00000462970.5

PSMD4-208, Transcript of proteasome 26S subunit, non-ATPase 4, human

TSL 5

Gene PSMD4, Length 900 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMD4-208	ENST00000462970	TRAPPC3L	Q5T215	181 aa		12.61	□□□□□ -0.39
PSMD4-208	ENST00000462970	RC3H1	Q5TC82	1133 aa	Known RBP	12.61	□□□□□ -0.39
PSMD4-208	ENST00000462970	FAM9B	Q8IZU0	186 aa		12.61	□□□□□ -0.39
PSMD4-208	ENST00000462970	CIC	Q96RK0	1608 aa	Predicted RBP	12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	RPS6KA4	O75676	772 aa		12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	STARD3NL	O95772	234 aa		12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	CYP19A1	P11511	503 aa	Predicted RBP	12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	RFC4	P35249	363 aa		12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	VSIG10	Q8N0Z9	540 aa		12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	PNISR	Q8TF01	805 aa	Known RBP	12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	ARX	Q96QS3	562 aa		12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	KDM3B	Q7LBC6	1761 aa		12.6	□□□□□ -0.39
PSMD4-208	ENST00000462970	C4A	P0C0L4	1744 aa		12.59	□□□□□ -0.39
PSMD4-208	ENST00000462970	INTS5	Q6P9B9	1019 aa	Known RBP	12.59	□□□□□ -0.39
PSMD4-208	ENST00000462970	ARHGEF1	Q92888	912 aa	Known RBP	12.59	□□□□□ -0.39
PSMD4-208	ENST00000462970	TSPYL4	Q9UJ04	414 aa		12.59	□□□□□ -0.39
PSMD4-208	ENST00000462970	PRAMEF22	A3QJZ6	481 aa		12.58	□□□□□ -0.4
PSMD4-208	ENST00000462970	SNRPA1	P09661	255 aa	Known RBP	12.58	□□□□□ -0.4
PSMD4-208	ENST00000462970	NPM2	Q86SE8	214 aa	Known RBP	12.58	□□□□□ -0.4
PSMD4-208	ENST00000462970	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.58	□□□□□ -0.4
PSMD4-208	ENST00000462970	ZBTB1	Q9Y2K1	713 aa		12.58	□□□□□ -0.4
PSMD4-208	ENST00000462970	YY1	P25490	414 aa		12.57	□□□□□ -0.4
PSMD4-208	ENST00000462970	PIP4K2A	P48426	406 aa	Predicted RBP	12.57	□□□□□ -0.4
PSMD4-208	ENST00000462970	SRP68	Q9UHB9	627 aa	Known RBP	12.57	□□□□□ -0.4
PSMD4-208	ENST00000462970	TRIM35	Q9UPQ4	493 aa		12.57	□□□□□ -0.4
PSMD4-208	ENST00000462970	SALL2	Q9Y467	1007 aa	Predicted RBP	12.57	□□□□□ -0.4
PSMD4-208	ENST00000462970	ZPR1	O75312	459 aa		12.56	□□□□□ -0.4
PSMD4-208	ENST00000462970	A1BG	P04217	495 aa		12.56	□□□□□ -0.4
PSMD4-208	ENST00000462970	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.56	□□□□□ -0.4
PSMD4-208	ENST00000462970	USP16	Q9Y5T5	823 aa		12.56	□□□□□ -0.4
PSMD4-208	ENST00000462970	LAMB4	A4D0S4	1761 aa		12.56	□□□□□ -0.4
PSMD4-208	ENST00000462970	COL15A1	P39059	1388 aa		12.56	□□□□□ -0.4
PSMD4-208	ENST00000462970	COL24A1	Q17RW2	1714 aa		12.55	□□□□□ -0.4
PSMD4-208	ENST00000462970	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.55	□□□□□ -0.4
PSMD4-208	ENST00000462970	DIEXF	Q68CQ4	756 aa	Known RBP	12.55	□□□□□ -0.4
PSMD4-208	ENST00000462970	SOS1	Q07889	1333 aa	Predicted RBP	12.55	□□□□□ -0.4
PSMD4-208	ENST00000462970	EIF4A1	P60842	406 aa	Known RBP	12.54	□□□□□ -0.4
PSMD4-208	ENST00000462970	USPL1	Q5W0Q7	1092 aa		12.54	□□□□□ -0.4
PSMD4-208	ENST00000462970	SGIP1	Q9BQI5	828 aa		12.54	□□□□□ -0.4
PSMD4-208	ENST00000462970	SYT17	Q9BSW7	474 aa		12.54	□□□□□ -0.4
PSMD4-208	ENST00000462970		A0A087WZG4	1122 aa		12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	DCAF8L1	A6NGE4	600 aa		12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	MMP10	P09238	476 aa		12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	GYS1	P13807	737 aa		12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	EIF2S2	P20042	333 aa	Known RBP	12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	CALD1	Q05682	793 aa	Known RBP	12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	NLGN1	Q8N2Q7	840 aa		12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	NGEF	Q8N5V2	710 aa		12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	NECTIN2	Q92692	538 aa		12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	TBC1D2B	Q9UPU7	963 aa		12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	USP42	Q9H9J4	1324 aa	Known RBP	12.53	□□□□□ -0.4
PSMD4-208	ENST00000462970	GIGYF1	O75420	1035 aa	Predicted RBP	12.52	□□□□□ -0.41
PSMD4-208	ENST00000462970	PELP1	Q8IZL8	1130 aa	Known RBP	12.52	□□□□□ -0.41
PSMD4-208	ENST00000462970	CHL1	O00533	1208 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	MYL6B	P14649	208 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	IL6ST	P40189	918 aa	Predicted RBP	12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	EIF5	P55010	431 aa	Known RBP	12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	GNAI1	P63096	354 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	FKBP8	Q14318	412 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	KRT24	Q2M2I5	525 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	BICDL1	Q6ZP65	573 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	BABAM1	Q9NWV8	329 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	NARF	Q9UHQ1	456 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	PARP3	Q9Y6F1	533 aa		12.51	□□□□□ -0.41
PSMD4-208	ENST00000462970	DZIP3	Q86Y13	1208 aa	Known RBP	12.5	□□□□□ -0.41
PSMD4-208	ENST00000462970	CFAP44	Q96MT7	982 aa		12.5	□□□□□ -0.41
PSMD4-208	ENST00000462970	MBIP	Q9NS73	344 aa		12.5	□□□□□ -0.41
PSMD4-208	ENST00000462970	SCN7A	Q01118	1682 aa		12.49	□□□□□ -0.41
PSMD4-208	ENST00000462970	NBPF26	B4DH59	902 aa		12.49	□□□□□ -0.41
PSMD4-208	ENST00000462970	NBPF10	Q6P3W6	841 aa	Known RBP	12.49	□□□□□ -0.41
PSMD4-208	ENST00000462970	MIER1	Q8N108	512 aa		12.49	□□□□□ -0.41
PSMD4-208	ENST00000462970	NBPF15	Q8N660	670 aa		12.49	□□□□□ -0.41
PSMD4-208	ENST00000462970	IFT57	Q9NWB7	429 aa		12.49	□□□□□ -0.41
PSMD4-208	ENST00000462970	CCER2	I3L3R5	266 aa		12.48	□□□□□ -0.41
PSMD4-208	ENST00000462970	ELL2	O00472	640 aa	Predicted RBP	12.48	□□□□□ -0.41
PSMD4-208	ENST00000462970	WWC1	Q8IX03	1113 aa		12.48	□□□□□ -0.41
PSMD4-208	ENST00000462970	NLGN2	Q8NFZ4	835 aa		12.48	□□□□□ -0.41
PSMD4-208	ENST00000462970	TSR2	Q969E8	191 aa	Known RBP	12.48	□□□□□ -0.41
PSMD4-208	ENST00000462970	WWC3	Q9ULE0	1092 aa		12.48	□□□□□ -0.41
PSMD4-208	ENST00000462970	BCOR	Q6W2J9	1755 aa		12.48	□□□□□ -0.41
PSMD4-208	ENST00000462970	AFDN	P55196	1824 aa	Known RBP	12.47	□□□□□ -0.41
PSMD4-208	ENST00000462970	NPHP1	O15259	732 aa		12.47	□□□□□ -0.41
PSMD4-208	ENST00000462970	ANXA1	P04083	346 aa		12.47	□□□□□ -0.41
PSMD4-208	ENST00000462970	DDR1	Q08345	913 aa		12.47	□□□□□ -0.41
PSMD4-208	ENST00000462970	CAMTA2	O94983	1202 aa		12.46	□□□□□ -0.41
PSMD4-208	ENST00000462970	NFIX	Q14938	502 aa		12.46	□□□□□ -0.41
PSMD4-208	ENST00000462970	CCDC27	Q2M243	656 aa		12.46	□□□□□ -0.41
PSMD4-208	ENST00000462970	HDGFL1	Q5TGJ6	251 aa		12.46	□□□□□ -0.41
PSMD4-208	ENST00000462970	DUSP27	Q5VZP5	1158 aa		12.46	□□□□□ -0.41
PSMD4-208	ENST00000462970	KIF6	Q6ZMV9	814 aa		12.46	□□□□□ -0.41
PSMD4-208	ENST00000462970	BCL2L12	Q9HB09	334 aa		12.46	□□□□□ -0.41
PSMD4-208	ENST00000462970	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.46	□□□□□ -0.42
PSMD4-208	ENST00000462970	ZNF853	P0CG23	659 aa		12.45	□□□□□ -0.42
PSMD4-208	ENST00000462970	AIMP1	Q12904	312 aa	Known RBP	12.45	□□□□□ -0.42
PSMD4-208	ENST00000462970	GPR162	Q16538	588 aa		12.45	□□□□□ -0.42
PSMD4-208	ENST00000462970	TBC1D9B	Q66K14	1250 aa		12.45	□□□□□ -0.42
PSMD4-208	ENST00000462970	ZNF652	Q9Y2D9	606 aa		12.45	□□□□□ -0.42
PSMD4-208	ENST00000462970	CD2AP	Q9Y5K6	639 aa		12.45	□□□□□ -0.42
PSMD4-208	ENST00000462970	NUP98	P52948	1817 aa		12.45	□□□□□ -0.42
PSMD4-208	ENST00000462970	FAM177B	A6PVY3	158 aa		12.44	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms