RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 SNRPA1P09661 255 aaKnown RBP29.84■■■□□ 2.37
CCDC28B-203ENST00000461819 MTFR1LQ9H019 292 aa29.84■■■□□ 2.37
CCDC28B-203ENST00000461819 SPON1Q9HCB6 807 aa29.84■■■□□ 2.37
CCDC28B-203ENST00000461819 INTS5Q6P9B9 1019 aaKnown RBP29.83■■■□□ 2.37
CCDC28B-203ENST00000461819 SLC16A10Q8TF71 515 aa29.83■■■□□ 2.37
CCDC28B-203ENST00000461819 EIF4A1P60842 406 aaKnown RBP29.82■■■□□ 2.36
CCDC28B-203ENST00000461819 ATF5Q9Y2D1 282 aaPredicted RBP29.82■■■□□ 2.36
CCDC28B-203ENST00000461819 CCDC27Q2M243 656 aa29.81■■■□□ 2.36
CCDC28B-203ENST00000461819 TRAPPC3LQ5T215 181 aa29.81■■■□□ 2.36
CCDC28B-203ENST00000461819 SALL2Q9Y467 1007 aaPredicted RBP29.81■■■□□ 2.36
CCDC28B-203ENST00000461819 PRAMEF22A3QJZ6 481 aa29.8■■■□□ 2.36
CCDC28B-203ENST00000461819 CHL1O00533 1208 aa29.8■■■□□ 2.36
CCDC28B-203ENST00000461819 ADRA2BP18089 450 aa29.8■■■□□ 2.36
CCDC28B-203ENST00000461819 ZBTB1Q9Y2K1 713 aa29.8■■■□□ 2.36
CCDC28B-203ENST00000461819 WWC1Q8IX03 1113 aa29.79■■■□□ 2.36
CCDC28B-203ENST00000461819 CFAP44Q96MT7 982 aa29.79■■■□□ 2.36
CCDC28B-203ENST00000461819 COL24A1Q17RW2 1714 aa29.79■■■□□ 2.36
CCDC28B-203ENST00000461819 CANXP27824 592 aaKnown RBP29.78■■■□□ 2.36
CCDC28B-203ENST00000461819 NCBP3Q53F19 620 aaKnown RBP29.78■■■□□ 2.36
CCDC28B-203ENST00000461819 USP16Q9Y5T5 823 aa29.78■■■□□ 2.36
CCDC28B-203ENST00000461819 GNAI1P63096 354 aa29.77■■■□□ 2.36
CCDC28B-203ENST00000461819 IFT57Q9NWB7 429 aa29.77■■■□□ 2.36
CCDC28B-203ENST00000461819 SOS1Q07889 1333 aaPredicted RBP29.76■■■□□ 2.36
CCDC28B-203ENST00000461819 GIGYF1O75420 1035 aaPredicted RBP29.76■■■□□ 2.35
CCDC28B-203ENST00000461819 RFC4P35249 363 aa29.76■■■□□ 2.35
CCDC28B-203ENST00000461819 ARHGEF1Q92888 912 aaKnown RBP29.76■■■□□ 2.35
CCDC28B-203ENST00000461819 SRCAPQ6ZRS2 3230 aa29.75■■■□□ 2.35
CCDC28B-203ENST00000461819 COL15A1P39059 1388 aa29.75■■■□□ 2.35
CCDC28B-203ENST00000461819 A1BGP04217 495 aa29.74■■■□□ 2.35
CCDC28B-203ENST00000461819 MSL1Q68DK7 614 aa29.74■■■□□ 2.35
CCDC28B-203ENST00000461819 NGEFQ8N5V2 710 aa29.74■■■□□ 2.35
CCDC28B-203ENST00000461819 MBIPQ9NS73 344 aa29.74■■■□□ 2.35
CCDC28B-203ENST00000461819 ZNF330Q9Y3S2 320 aaPredicted RBP29.74■■■□□ 2.35
CCDC28B-203ENST00000461819 ZNF853P0CG23 659 aa29.72■■■□□ 2.35
CCDC28B-203ENST00000461819 PPP1R1BQ9UD71 204 aaPredicted RBP29.72■■■□□ 2.35
CCDC28B-203ENST00000461819 POLD1P28340 1107 aa29.71■■■□□ 2.35
CCDC28B-203ENST00000461819 PTGER2P43116 358 aa29.71■■■□□ 2.35
CCDC28B-203ENST00000461819 NPM2Q86SE8 214 aaKnown RBP29.71■■■□□ 2.35
CCDC28B-203ENST00000461819 IL6STP40189 918 aaPredicted RBP29.69■■■□□ 2.34
CCDC28B-203ENST00000461819 PIP4K2AP48426 406 aaPredicted RBP29.69■■■□□ 2.34
CCDC28B-203ENST00000461819 IL16Q14005 1332 aa29.69■■■□□ 2.34
CCDC28B-203ENST00000461819 EIF5P55010 431 aaKnown RBP29.68■■■□□ 2.34
CCDC28B-203ENST00000461819 KRT24Q2M2I5 525 aa29.68■■■□□ 2.34
CCDC28B-203ENST00000461819 USP42Q9H9J4 1324 aaKnown RBP29.68■■■□□ 2.34
CCDC28B-203ENST00000461819 SCN7AQ01118 1682 aa29.67■■■□□ 2.34
CCDC28B-203ENST00000461819 A0A087WZG4 1122 aa29.67■■■□□ 2.34
CCDC28B-203ENST00000461819 ZPR1O75312 459 aa29.67■■■□□ 2.34
CCDC28B-203ENST00000461819 WDR63Q8IWG1 891 aa29.67■■■□□ 2.34
CCDC28B-203ENST00000461819 SGIP1Q9BQI5 828 aa29.67■■■□□ 2.34
CCDC28B-203ENST00000461819 SRP68Q9UHB9 627 aaKnown RBP29.67■■■□□ 2.34
CCDC28B-203ENST00000461819 EIF2S2P20042 333 aaKnown RBP29.65■■■□□ 2.34
CCDC28B-203ENST00000461819 TSR2Q969E8 191 aaKnown RBP29.65■■■□□ 2.34
CCDC28B-203ENST00000461819 ARXQ96QS3 562 aa29.65■■■□□ 2.34
CCDC28B-203ENST00000461819 BCORQ6W2J9 1755 aa29.64■■■□□ 2.34
CCDC28B-203ENST00000461819 GYS1P13807 737 aa29.64■■■□□ 2.34
CCDC28B-203ENST00000461819 NBPF26B4DH59 902 aa29.63■■■□□ 2.33
CCDC28B-203ENST00000461819 NBPF10Q6P3W6 841 aaKnown RBP29.63■■■□□ 2.33
CCDC28B-203ENST00000461819 NLGN1Q8N2Q7 840 aa29.63■■■□□ 2.33
CCDC28B-203ENST00000461819 NBPF15Q8N660 670 aa29.63■■■□□ 2.33
CCDC28B-203ENST00000461819 NARFQ9UHQ1 456 aa29.63■■■□□ 2.33
CCDC28B-203ENST00000461819 USPL1Q5W0Q7 1092 aa29.62■■■□□ 2.33
CCDC28B-203ENST00000461819 ERBB4Q15303 1308 aa29.62■■■□□ 2.33
CCDC28B-203ENST00000461819 HOXB7P09629 217 aa29.61■■■□□ 2.33
CCDC28B-203ENST00000461819 DUSP27Q5VZP5 1158 aa29.61■■■□□ 2.33
CCDC28B-203ENST00000461819 NECTIN2Q92692 538 aa29.61■■■□□ 2.33
CCDC28B-203ENST00000461819 MYL6BP14649 208 aa29.6■■■□□ 2.33
CCDC28B-203ENST00000461819 TBC1D2BQ9UPU7 963 aa29.6■■■□□ 2.33
CCDC28B-203ENST00000461819 HDGFL1Q5TGJ6 251 aa29.59■■■□□ 2.33
CCDC28B-203ENST00000461819 DZIP3Q86Y13 1208 aaKnown RBP29.59■■■□□ 2.33
CCDC28B-203ENST00000461819 FKBP8Q14318 412 aa29.58■■■□□ 2.33
CCDC28B-203ENST00000461819 FANCIQ9NVI1 1328 aa29.58■■■□□ 2.33
CCDC28B-203ENST00000461819 ZNF521Q96K83 1311 aa29.57■■■□□ 2.32
CCDC28B-203ENST00000461819 ELL2O00472 640 aaPredicted RBP29.57■■■□□ 2.32
CCDC28B-203ENST00000461819 MMP10P09238 476 aa29.57■■■□□ 2.32
CCDC28B-203ENST00000461819 KLHL34Q8N239 644 aa29.56■■■□□ 2.32
CCDC28B-203ENST00000461819 C8orf58Q8NAV2 365 aa29.56■■■□□ 2.32
CCDC28B-203ENST00000461819 MYH16Q9H6N6 1097 aa29.56■■■□□ 2.32
CCDC28B-203ENST00000461819 GOLGA2Q08379 1002 aa29.54■■■□□ 2.32
CCDC28B-203ENST00000461819 CAMTA2O94983 1202 aa29.53■■■□□ 2.32
CCDC28B-203ENST00000461819 BCL2L12Q9HB09 334 aa29.53■■■□□ 2.32
CCDC28B-203ENST00000461819 SPINK5Q9NQ38 1064 aaPredicted RBP29.53■■■□□ 2.32
CCDC28B-203ENST00000461819 PARP3Q9Y6F1 533 aa29.53■■■□□ 2.32
CCDC28B-203ENST00000461819 ANXA1P04083 346 aa29.52■■■□□ 2.32
CCDC28B-203ENST00000461819 PROSER3Q2NL68 480 aa29.52■■■□□ 2.32
CCDC28B-203ENST00000461819 KIF6Q6ZMV9 814 aa29.52■■■□□ 2.32
CCDC28B-203ENST00000461819 FHDC1Q9C0D6 1143 aaPredicted RBP29.52■■■□□ 2.32
CCDC28B-203ENST00000461819 CHPF2Q9P2E5 772 aa29.52■■■□□ 2.32
CCDC28B-203ENST00000461819 NUP98P52948 1817 aa29.51■■■□□ 2.31
CCDC28B-203ENST00000461819 PDIA6Q15084 440 aa29.51■■■□□ 2.31
CCDC28B-203ENST00000461819 TSPYL6Q8N831 410 aa29.51■■■□□ 2.31
CCDC28B-203ENST00000461819 DDX21Q9NR30 783 aaKnown RBP eCLIP29.51■■■□□ 2.31
CCDC28B-203ENST00000461819 ZNF652Q9Y2D9 606 aa29.51■■■□□ 2.31
CCDC28B-203ENST00000461819 AFDNP55196 1824 aaKnown RBP29.5■■■□□ 2.31
CCDC28B-203ENST00000461819 CHMP4AQ9BY43 222 aa29.5■■■□□ 2.31
CCDC28B-203ENST00000461819 DBF4Q9UBU7 674 aaPredicted RBP29.5■■■□□ 2.31
CCDC28B-203ENST00000461819 TWISTNBQ3B726 338 aaPredicted RBP29.49■■■□□ 2.31
CCDC28B-203ENST00000461819 NFIXQ14938 502 aa29.48■■■□□ 2.31
CCDC28B-203ENST00000461819 BICDL1Q6ZP65 573 aa29.48■■■□□ 2.31
CCDC28B-203ENST00000461819 DDR1Q08345 913 aa29.47■■■□□ 2.31
CCDC28B-203ENST00000461819 TTLL7Q6ZT98 887 aa29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms