RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TRIM35Q9UPQ4 493 aa15.54■□□□□ 0.08
VPS52-213ENST00000461743 RRP7AQ9Y3A4 280 aaKnown RBP15.54■□□□□ 0.08
VPS52-213ENST00000461743 CACNA1FO60840 1977 aa15.54■□□□□ 0.08
VPS52-213ENST00000461743 AFDNP55196 1824 aaKnown RBP15.53■□□□□ 0.08
VPS52-213ENST00000461743 APAF1O14727 1248 aa15.53■□□□□ 0.08
VPS52-213ENST00000461743 MSH5O43196 834 aa15.53■□□□□ 0.08
VPS52-213ENST00000461743 SNRPA1P09661 255 aaKnown RBP15.53■□□□□ 0.08
VPS52-213ENST00000461743 CCDC27Q2M243 656 aa15.53■□□□□ 0.08
VPS52-213ENST00000461743 INTS5Q6P9B9 1019 aaKnown RBP15.53■□□□□ 0.08
VPS52-213ENST00000461743 AMIGO3Q86WK7 504 aa15.53■□□□□ 0.08
VPS52-213ENST00000461743 THUMPD2Q9BTF0 503 aaKnown RBP15.53■□□□□ 0.08
VPS52-213ENST00000461743 PPP1R1BQ9UD71 204 aaPredicted RBP15.53■□□□□ 0.08
VPS52-213ENST00000461743 NRXN2Q9P2S2 1712 aa15.53■□□□□ 0.08
VPS52-213ENST00000461743 CCER2I3L3R5 266 aa15.52■□□□□ 0.08
VPS52-213ENST00000461743 NEUROD2Q15784 382 aa15.52■□□□□ 0.08
VPS52-213ENST00000461743 TSPYL4Q9UJ04 414 aa15.52■□□□□ 0.08
VPS52-213ENST00000461743 NUP98P52948 1817 aa15.52■□□□□ 0.07
VPS52-213ENST00000461743 KCNQ3O43525 872 aa15.51■□□□□ 0.07
VPS52-213ENST00000461743 NGEFQ8N5V2 710 aa15.51■□□□□ 0.07
VPS52-213ENST00000461743 ATF5Q9Y2D1 282 aaPredicted RBP15.51■□□□□ 0.07
VPS52-213ENST00000461743 ZBTB1Q9Y2K1 713 aa15.51■□□□□ 0.07
VPS52-213ENST00000461743 USP42Q9H9J4 1324 aaKnown RBP15.5■□□□□ 0.07
VPS52-213ENST00000461743 ANKRD36CQ5JPF3 1778 aa15.5■□□□□ 0.07
VPS52-213ENST00000461743 RFC4P35249 363 aa15.5■□□□□ 0.07
VPS52-213ENST00000461743 IL6STP40189 918 aaPredicted RBP15.5■□□□□ 0.07
VPS52-213ENST00000461743 EIF4A1P60842 406 aaKnown RBP15.5■□□□□ 0.07
VPS52-213ENST00000461743 ARHGEF1Q92888 912 aaKnown RBP15.5■□□□□ 0.07
VPS52-213ENST00000461743 ERBB4Q15303 1308 aa15.49■□□□□ 0.07
VPS52-213ENST00000461743 KIAA1551Q9HCM1 1747 aa15.49■□□□□ 0.07
VPS52-213ENST00000461743 BRCA1P38398 1863 aaKnown RBP15.49■□□□□ 0.07
VPS52-213ENST00000461743 A0A087WZG4 1122 aa15.49■□□□□ 0.07
VPS52-213ENST00000461743 CFAP44Q96MT7 982 aa15.49■□□□□ 0.07
VPS52-213ENST00000461743 ARXQ96QS3 562 aa15.49■□□□□ 0.07
VPS52-213ENST00000461743 CHL1O00533 1208 aa15.48■□□□□ 0.07
VPS52-213ENST00000461743 GIGYF1O75420 1035 aaPredicted RBP15.48■□□□□ 0.07
VPS52-213ENST00000461743 EIF5P55010 431 aaKnown RBP15.48■□□□□ 0.07
VPS52-213ENST00000461743 NLGN1Q8N2Q7 840 aa15.48■□□□□ 0.07
VPS52-213ENST00000461743 IFT57Q9NWB7 429 aa15.48■□□□□ 0.07
VPS52-213ENST00000461743 MIS18AQ9NYP9 233 aa15.48■□□□□ 0.07
VPS52-213ENST00000461743 DLEC1Q9Y238 1755 aa15.48■□□□□ 0.07
VPS52-213ENST00000461743 GNAI1P63096 354 aa15.47■□□□□ 0.07
VPS52-213ENST00000461743 NARFQ9UHQ1 456 aa15.47■□□□□ 0.07
VPS52-213ENST00000461743 IL16Q14005 1332 aa15.46■□□□□ 0.07
VPS52-213ENST00000461743 RGL2O15211 777 aa15.46■□□□□ 0.07
VPS52-213ENST00000461743 ZPR1O75312 459 aa15.46■□□□□ 0.07
VPS52-213ENST00000461743 HOXB7P09629 217 aa15.46■□□□□ 0.07
VPS52-213ENST00000461743 ZNF853P0CG23 659 aa15.46■□□□□ 0.07
VPS52-213ENST00000461743 GYS1P13807 737 aa15.46■□□□□ 0.07
VPS52-213ENST00000461743 DIEXFQ68CQ4 756 aaKnown RBP15.46■□□□□ 0.07
VPS52-213ENST00000461743 MSL1Q68DK7 614 aa15.46■□□□□ 0.07
VPS52-213ENST00000461743 NPM2Q86SE8 214 aaKnown RBP15.46■□□□□ 0.07
VPS52-213ENST00000461743 CANXP27824 592 aaKnown RBP15.45■□□□□ 0.06
VPS52-213ENST00000461743 USP16Q9Y5T5 823 aa15.45■□□□□ 0.06
VPS52-213ENST00000461743 CHD4Q14839 1912 aa15.45■□□□□ 0.06
VPS52-213ENST00000461743 C10orf71Q711Q0 1435 aa15.44■□□□□ 0.06
VPS52-213ENST00000461743 SMIM5Q71RC9 77 aa15.44■□□□□ 0.06
VPS52-213ENST00000461743 FAM9BQ8IZU0 186 aa15.44■□□□□ 0.06
VPS52-213ENST00000461743 PRAMEF22A3QJZ6 481 aa15.43■□□□□ 0.06
VPS52-213ENST00000461743 WWC1Q8IX03 1113 aa15.43■□□□□ 0.06
VPS52-213ENST00000461743 N4BP2Q86UW6 1770 aaPredicted RBP15.43■□□□□ 0.06
VPS52-213ENST00000461743 ARFGEF2Q9Y6D5 1785 aa15.43■□□□□ 0.06
VPS52-213ENST00000461743 ARFGEF1Q9Y6D6 1849 aa15.43■□□□□ 0.06
VPS52-213ENST00000461743 ANKRD31Q8N7Z5 1873 aa15.42■□□□□ 0.06
VPS52-213ENST00000461743 A1BGP04217 495 aa15.42■□□□□ 0.06
VPS52-213ENST00000461743 MMP10P09238 476 aa15.42■□□□□ 0.06
VPS52-213ENST00000461743 FHDC1Q9C0D6 1143 aaPredicted RBP15.42■□□□□ 0.06
VPS52-213ENST00000461743 MBIPQ9NS73 344 aa15.42■□□□□ 0.06
VPS52-213ENST00000461743 SRP68Q9UHB9 627 aaKnown RBP15.42■□□□□ 0.06
VPS52-213ENST00000461743 LAS1LQ9Y4W2 734 aaKnown RBP15.42■□□□□ 0.06
VPS52-213ENST00000461743 USPL1Q5W0Q7 1092 aa15.41■□□□□ 0.06
VPS52-213ENST00000461743 WDR63Q8IWG1 891 aa15.41■□□□□ 0.06
VPS52-213ENST00000461743 CHMP4AQ9BY43 222 aa15.41■□□□□ 0.06
VPS52-213ENST00000461743 CD2APQ9Y5K6 639 aa15.41■□□□□ 0.06
VPS52-213ENST00000461743 NBPF26B4DH59 902 aa15.4■□□□□ 0.06
VPS52-213ENST00000461743 NBPF10Q6P3W6 841 aaKnown RBP15.4■□□□□ 0.06
VPS52-213ENST00000461743 NBPF15Q8N660 670 aa15.4■□□□□ 0.06
VPS52-213ENST00000461743 SYT17Q9BSW7 474 aa15.4■□□□□ 0.06
VPS52-213ENST00000461743 ZNF652Q9Y2D9 606 aa15.4■□□□□ 0.06
VPS52-213ENST00000461743 ZNF330Q9Y3S2 320 aaPredicted RBP15.4■□□□□ 0.06
VPS52-213ENST00000461743 PARP3Q9Y6F1 533 aa15.4■□□□□ 0.06
VPS52-213ENST00000461743 CARMIL3Q8ND23 1372 aa15.39■□□□□ 0.05
VPS52-213ENST00000461743 CAMTA2O94983 1202 aa15.39■□□□□ 0.05
VPS52-213ENST00000461743 FKBP8Q14318 412 aa15.39■□□□□ 0.05
VPS52-213ENST00000461743 CLEC4GQ6UXB4 293 aa15.39■□□□□ 0.05
VPS52-213ENST00000461743 DZIP3Q86Y13 1208 aaKnown RBP15.39■□□□□ 0.05
VPS52-213ENST00000461743 ATP10DQ9P241 1426 aa15.38■□□□□ 0.05
VPS52-213ENST00000461743 BCL2L12Q9HB09 334 aa15.38■□□□□ 0.05
VPS52-213ENST00000461743 GOLGB1Q14789 3259 aaKnown RBP15.38■□□□□ 0.05
VPS52-213ENST00000461743 COL11A2P13942 1736 aaPredicted RBP15.37■□□□□ 0.05
VPS52-213ENST00000461743 POLRMTO00411 1230 aaKnown RBP15.37■□□□□ 0.05
VPS52-213ENST00000461743 TM4SF1P30408 202 aa15.37■□□□□ 0.05
VPS52-213ENST00000461743 ZNF521Q96K83 1311 aa15.37■□□□□ 0.05
VPS52-213ENST00000461743 LAMB2P55268 1798 aa15.36■□□□□ 0.05
VPS52-213ENST00000461743 CACNA1SQ13698 1873 aa15.36■□□□□ 0.05
VPS52-213ENST00000461743 PXDNLA1KZ92 1463 aa15.36■□□□□ 0.05
VPS52-213ENST00000461743 ERVV-1B6SEH8 477 aa15.36■□□□□ 0.05
VPS52-213ENST00000461743 DDR1Q08345 913 aa15.36■□□□□ 0.05
VPS52-213ENST00000461743 HDGFL1Q5TGJ6 251 aa15.36■□□□□ 0.05
VPS52-213ENST00000461743 KIF6Q6ZMV9 814 aa15.36■□□□□ 0.05
VPS52-213ENST00000461743 DDX21Q9NR30 783 aaKnown RBP eCLIP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms